Phytochemical on-line screening and in silico study of Helianthemum confertum : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding
Seven components from the methanol extract of the aerial part of the endemic species were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙ test, ORAC, an...
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creator | Chemam, Yasmine Benayache, Samir Bouzina, Abdeslem Marchioni, Eric Sekiou, Omar Bentoumi, Houria Zhao, Minjie Bouslama, Zihad Aouf, Nour-Eddine Benayache, Fadila |
description | Seven components from the methanol extract of the aerial part of the endemic species
were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙
test, ORAC, and TEAC assays, the free radical scavenging capacity of the ethyl acetate extract was assessed. The fractionation of these extracts by CC, TLC, and reverse-phase HPLC was guided by the collected data, which was corroborated by TEAC and ORAC assays. Molecular docking studies, DFT at the B3LYP level, and an examination of the ADME/T predictions of all compounds helped to further clarify the phytochemicals' antioxidant potential. Isolation and identification of all components were confirmed through spectroscopy, which revealed a mixture (50-50%) of
-hydroxybenzoic acid 1 and methyl gallate 2, protocatechuic acid 3, astragalin 4,
-tiliroside 5,
-tiliroside 6, contaminated by
-tiliroside and 3-oxo-α-ionol-β-d-glucopyranoside 7, as well as two new compounds for the genus
(2 and 7). With a focus on compounds 1, 2, 3, and 4, the results clearly showed that the extract and the compounds tested from this species had a high antioxidant capacity. Within the xanthine oxidase enzyme's pocket, all of the components tested showed strong and stable binding. In light of these findings, the xanthine oxidase/methyl gallate 2 complex was simulated using the Desmond module of the Schrodinger suite molecular dynamics (MD) for 100 ns. Substantially stable receptor-ligand complexes were observed following 1 ns of MD simulation. |
doi_str_mv | 10.1039/d4ra02540g |
format | Article |
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were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙
test, ORAC, and TEAC assays, the free radical scavenging capacity of the ethyl acetate extract was assessed. The fractionation of these extracts by CC, TLC, and reverse-phase HPLC was guided by the collected data, which was corroborated by TEAC and ORAC assays. Molecular docking studies, DFT at the B3LYP level, and an examination of the ADME/T predictions of all compounds helped to further clarify the phytochemicals' antioxidant potential. Isolation and identification of all components were confirmed through spectroscopy, which revealed a mixture (50-50%) of
-hydroxybenzoic acid 1 and methyl gallate 2, protocatechuic acid 3, astragalin 4,
-tiliroside 5,
-tiliroside 6, contaminated by
-tiliroside and 3-oxo-α-ionol-β-d-glucopyranoside 7, as well as two new compounds for the genus
(2 and 7). With a focus on compounds 1, 2, 3, and 4, the results clearly showed that the extract and the compounds tested from this species had a high antioxidant capacity. Within the xanthine oxidase enzyme's pocket, all of the components tested showed strong and stable binding. In light of these findings, the xanthine oxidase/methyl gallate 2 complex was simulated using the Desmond module of the Schrodinger suite molecular dynamics (MD) for 100 ns. Substantially stable receptor-ligand complexes were observed following 1 ns of MD simulation.</description><identifier>ISSN: 2046-2069</identifier><identifier>EISSN: 2046-2069</identifier><identifier>DOI: 10.1039/d4ra02540g</identifier><identifier>PMID: 39010907</identifier><language>eng</language><publisher>England: Royal Society of Chemistry</publisher><subject>Antioxidants ; Binding ; Chemistry ; Ethyl acetate ; Fractionation ; Free radicals ; Molecular docking ; Molecular dynamics ; Phytochemicals ; Scavenging ; Xanthine oxidase</subject><ispartof>RSC advances, 2024-07, Vol.14 (31), p.22209-22228</ispartof><rights>This journal is © The Royal Society of Chemistry.</rights><rights>Copyright Royal Society of Chemistry 2024</rights><rights>This journal is © The Royal Society of Chemistry 2024 The Royal Society of Chemistry</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c296t-b69a5df0439958e0fd3e3ea4405087946c457e39c41022c360b1c53f112bde223</cites><orcidid>0000-0001-7826-3925</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11247359/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11247359/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/39010907$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chemam, Yasmine</creatorcontrib><creatorcontrib>Benayache, Samir</creatorcontrib><creatorcontrib>Bouzina, Abdeslem</creatorcontrib><creatorcontrib>Marchioni, Eric</creatorcontrib><creatorcontrib>Sekiou, Omar</creatorcontrib><creatorcontrib>Bentoumi, Houria</creatorcontrib><creatorcontrib>Zhao, Minjie</creatorcontrib><creatorcontrib>Bouslama, Zihad</creatorcontrib><creatorcontrib>Aouf, Nour-Eddine</creatorcontrib><creatorcontrib>Benayache, Fadila</creatorcontrib><title>Phytochemical on-line screening and in silico study of Helianthemum confertum : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding</title><title>RSC advances</title><addtitle>RSC Adv</addtitle><description>Seven components from the methanol extract of the aerial part of the endemic species
were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙
test, ORAC, and TEAC assays, the free radical scavenging capacity of the ethyl acetate extract was assessed. The fractionation of these extracts by CC, TLC, and reverse-phase HPLC was guided by the collected data, which was corroborated by TEAC and ORAC assays. Molecular docking studies, DFT at the B3LYP level, and an examination of the ADME/T predictions of all compounds helped to further clarify the phytochemicals' antioxidant potential. Isolation and identification of all components were confirmed through spectroscopy, which revealed a mixture (50-50%) of
-hydroxybenzoic acid 1 and methyl gallate 2, protocatechuic acid 3, astragalin 4,
-tiliroside 5,
-tiliroside 6, contaminated by
-tiliroside and 3-oxo-α-ionol-β-d-glucopyranoside 7, as well as two new compounds for the genus
(2 and 7). With a focus on compounds 1, 2, 3, and 4, the results clearly showed that the extract and the compounds tested from this species had a high antioxidant capacity. Within the xanthine oxidase enzyme's pocket, all of the components tested showed strong and stable binding. In light of these findings, the xanthine oxidase/methyl gallate 2 complex was simulated using the Desmond module of the Schrodinger suite molecular dynamics (MD) for 100 ns. Substantially stable receptor-ligand complexes were observed following 1 ns of MD simulation.</description><subject>Antioxidants</subject><subject>Binding</subject><subject>Chemistry</subject><subject>Ethyl acetate</subject><subject>Fractionation</subject><subject>Free radicals</subject><subject>Molecular docking</subject><subject>Molecular dynamics</subject><subject>Phytochemicals</subject><subject>Scavenging</subject><subject>Xanthine oxidase</subject><issn>2046-2069</issn><issn>2046-2069</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNpdks1u1DAQgCMEolXphQdAlrggtKHjnyRrLmjV7Q9SKxBazpHjTHZdOXaxnar7RLwm3m2pCr7MSP7m88gzRfGWwicKXJ70IihglYD1i-KQgahLBrV8-Sw_KI5jvIF86oqymr4uDrgEChKaw-L39802eb3B0WhliXelNQ5J1AHRGbcmyvXEOBKNNdqTmKZ-S_xALtEa5VKum0aivRswpJx9znwy_t70ORKlk7kzaTsjy_PVjFwvs2acrMqEm5HF8vrsZJULlN1GE2f7p-530l0He0dE0hnX5z7eFK8GZSMeP8aj4uf52er0srz6dvH1dHFVaibrVHa1VFU_gOBSVnOEoefIUQkBFcwbKWotqga51IICY5rX0FFd8YFS1vXIGD8qvjx4b6duxF6jS0HZ9jaYUYVt65Vp_71xZtOu_V2bDaLhlcyGD4-G4H9NGFM7mqjRWuXQT7HlMKdMMjrfoe__Q2_8FPJ_7Kk8VE6hydTHB0oHH2PA4akbCu1uB9ql-LHY78BFht897_8J_Ttx_gc99a18</recordid><startdate>20240712</startdate><enddate>20240712</enddate><creator>Chemam, Yasmine</creator><creator>Benayache, Samir</creator><creator>Bouzina, Abdeslem</creator><creator>Marchioni, Eric</creator><creator>Sekiou, Omar</creator><creator>Bentoumi, Houria</creator><creator>Zhao, Minjie</creator><creator>Bouslama, Zihad</creator><creator>Aouf, Nour-Eddine</creator><creator>Benayache, Fadila</creator><general>Royal Society of Chemistry</general><general>The Royal Society of Chemistry</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-7826-3925</orcidid></search><sort><creationdate>20240712</creationdate><title>Phytochemical on-line screening and in silico study of Helianthemum confertum : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding</title><author>Chemam, Yasmine ; Benayache, Samir ; Bouzina, Abdeslem ; Marchioni, Eric ; Sekiou, Omar ; Bentoumi, Houria ; Zhao, Minjie ; Bouslama, Zihad ; Aouf, Nour-Eddine ; Benayache, Fadila</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c296t-b69a5df0439958e0fd3e3ea4405087946c457e39c41022c360b1c53f112bde223</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Antioxidants</topic><topic>Binding</topic><topic>Chemistry</topic><topic>Ethyl acetate</topic><topic>Fractionation</topic><topic>Free radicals</topic><topic>Molecular docking</topic><topic>Molecular dynamics</topic><topic>Phytochemicals</topic><topic>Scavenging</topic><topic>Xanthine oxidase</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chemam, Yasmine</creatorcontrib><creatorcontrib>Benayache, Samir</creatorcontrib><creatorcontrib>Bouzina, Abdeslem</creatorcontrib><creatorcontrib>Marchioni, Eric</creatorcontrib><creatorcontrib>Sekiou, Omar</creatorcontrib><creatorcontrib>Bentoumi, Houria</creatorcontrib><creatorcontrib>Zhao, Minjie</creatorcontrib><creatorcontrib>Bouslama, Zihad</creatorcontrib><creatorcontrib>Aouf, Nour-Eddine</creatorcontrib><creatorcontrib>Benayache, Fadila</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>RSC advances</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chemam, Yasmine</au><au>Benayache, Samir</au><au>Bouzina, Abdeslem</au><au>Marchioni, Eric</au><au>Sekiou, Omar</au><au>Bentoumi, Houria</au><au>Zhao, Minjie</au><au>Bouslama, Zihad</au><au>Aouf, Nour-Eddine</au><au>Benayache, Fadila</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phytochemical on-line screening and in silico study of Helianthemum confertum : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding</atitle><jtitle>RSC advances</jtitle><addtitle>RSC Adv</addtitle><date>2024-07-12</date><risdate>2024</risdate><volume>14</volume><issue>31</issue><spage>22209</spage><epage>22228</epage><pages>22209-22228</pages><issn>2046-2069</issn><eissn>2046-2069</eissn><abstract>Seven components from the methanol extract of the aerial part of the endemic species
were isolated and identified for the first time. Investigating this species and its separated components chemical make-up and radical scavenging capacity, was the main goal. Using an online HPLC-ABTS˙
test, ORAC, and TEAC assays, the free radical scavenging capacity of the ethyl acetate extract was assessed. The fractionation of these extracts by CC, TLC, and reverse-phase HPLC was guided by the collected data, which was corroborated by TEAC and ORAC assays. Molecular docking studies, DFT at the B3LYP level, and an examination of the ADME/T predictions of all compounds helped to further clarify the phytochemicals' antioxidant potential. Isolation and identification of all components were confirmed through spectroscopy, which revealed a mixture (50-50%) of
-hydroxybenzoic acid 1 and methyl gallate 2, protocatechuic acid 3, astragalin 4,
-tiliroside 5,
-tiliroside 6, contaminated by
-tiliroside and 3-oxo-α-ionol-β-d-glucopyranoside 7, as well as two new compounds for the genus
(2 and 7). With a focus on compounds 1, 2, 3, and 4, the results clearly showed that the extract and the compounds tested from this species had a high antioxidant capacity. Within the xanthine oxidase enzyme's pocket, all of the components tested showed strong and stable binding. In light of these findings, the xanthine oxidase/methyl gallate 2 complex was simulated using the Desmond module of the Schrodinger suite molecular dynamics (MD) for 100 ns. Substantially stable receptor-ligand complexes were observed following 1 ns of MD simulation.</abstract><cop>England</cop><pub>Royal Society of Chemistry</pub><pmid>39010907</pmid><doi>10.1039/d4ra02540g</doi><tpages>20</tpages><orcidid>https://orcid.org/0000-0001-7826-3925</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Antioxidants Binding Chemistry Ethyl acetate Fractionation Free radicals Molecular docking Molecular dynamics Phytochemicals Scavenging Xanthine oxidase |
title | Phytochemical on-line screening and in silico study of Helianthemum confertum : antioxidant activity, DFT, MD simulation, ADME/T analysis, and xanthine oxidase binding |
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