Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork

Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork

A isolate from retail pork was whole genome sequenced using Illumina NovaSeq6000, with a 5,320,119 bp genome and 51.06% GC content. Several antibiotic resistance genes and plasmids, including , , IncHI2, and p0111 were obtained from subsequent analysis. These findings provide vital insights into gen...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Microbiology resource announcements 2024-06, Vol.13 (6), p.e0075423
Hauptverfasser: Ghorbani Tajani, Anahita, Sharma, Aniket, Blouin, Nicolas, Bisha, Bledar
Format: Artikel
Sprache:eng
Schlagworte:
Genome Sequences
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue 6
container_start_page e0075423
container_title Microbiology resource announcements
container_volume 13
creator Ghorbani Tajani, Anahita
Sharma, Aniket
Blouin, Nicolas
Bisha, Bledar
description A isolate from retail pork was whole genome sequenced using Illumina NovaSeq6000, with a 5,320,119 bp genome and 51.06% GC content. Several antibiotic resistance genes and plasmids, including , , IncHI2, and p0111 were obtained from subsequent analysis. These findings provide vital insights into generic determinants of antimicrobial resistance (AMR) in this foodborne pathogen.
doi_str_mv 10.1128/mra.00754-23
format Article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11237804</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3050938327</sourcerecordid><originalsourceid>FETCH-LOGICAL-c272t-166f70c56a1d58927bce2cd6084f6e823e4ac29fb7f846859c2888dea83bff023</originalsourceid><addsrcrecordid>eNpVkUFvFiEQhonR2KbtzbPh6KFbWdhd2JMxjVaTJh5qk97ILDv0QxdYgW3SP-Dvls_Wpp6Y8D7zDsxLyJuWnbUtV-99gjPGZN81XLwgh7yXQ8NGdfPyWX1ATnL-wRjjrFPjIF6TA6EkY6JvD8nvCwzRI834a8Ng8JRCKG5ysThDE2aXC9RreosB816c6bpA9m7O1AUK1McQ1x3kit9BcrWbRkuvYKkCLgvQcr_unN-S2zx1OS5QcKY2RV_tC7iFrjH9PCavLCwZTx7PI3L9-dP38y_N5beLr-cfLxvDJS9NOwxWMtMP0M69GrmcDHIzD0x1dkDFBXZg-GgnaVU3qH40XCk1IygxWcu4OCIfHnzXbfI4GwwlwaLX5Dykex3B6f-V4Hb6Nt7pum0hFeuqw7tHhxTrynLR3mWz_2nAuGUtWM9GoQSXFT19QE2KOSe0T3NatjdUusan_8anuaj42-dve4L_hSX-AMpzmgg</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3050938327</pqid></control><display><type>article</type><title>Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork</title><source>PubMed Central</source><creator>Ghorbani Tajani, Anahita ; Sharma, Aniket ; Blouin, Nicolas ; Bisha, Bledar</creator><contributor>Bruno, Vincent Michael</contributor><creatorcontrib>Ghorbani Tajani, Anahita ; Sharma, Aniket ; Blouin, Nicolas ; Bisha, Bledar ; Bruno, Vincent Michael</creatorcontrib><description>A isolate from retail pork was whole genome sequenced using Illumina NovaSeq6000, with a 5,320,119 bp genome and 51.06% GC content. Several antibiotic resistance genes and plasmids, including , , IncHI2, and p0111 were obtained from subsequent analysis. These findings provide vital insights into generic determinants of antimicrobial resistance (AMR) in this foodborne pathogen.</description><identifier>ISSN: 2576-098X</identifier><identifier>EISSN: 2576-098X</identifier><identifier>DOI: 10.1128/mra.00754-23</identifier><identifier>PMID: 38700351</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Genome Sequences</subject><ispartof>Microbiology resource announcements, 2024-06, Vol.13 (6), p.e0075423</ispartof><rights>Copyright © 2024 Ghorbani Tajani et al. 2024 Ghorbani Tajani et al.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c272t-166f70c56a1d58927bce2cd6084f6e823e4ac29fb7f846859c2888dea83bff023</cites><orcidid>0000-0002-4196-0425 ; 0000-0002-8447-8495 ; 0000-0003-3145-8025</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11237804/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11237804/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38700351$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Bruno, Vincent Michael</contributor><creatorcontrib>Ghorbani Tajani, Anahita</creatorcontrib><creatorcontrib>Sharma, Aniket</creatorcontrib><creatorcontrib>Blouin, Nicolas</creatorcontrib><creatorcontrib>Bisha, Bledar</creatorcontrib><title>Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork</title><title>Microbiology resource announcements</title><addtitle>Microbiol Resour Announc</addtitle><description>A isolate from retail pork was whole genome sequenced using Illumina NovaSeq6000, with a 5,320,119 bp genome and 51.06% GC content. Several antibiotic resistance genes and plasmids, including , , IncHI2, and p0111 were obtained from subsequent analysis. These findings provide vital insights into generic determinants of antimicrobial resistance (AMR) in this foodborne pathogen.</description><subject>Genome Sequences</subject><issn>2576-098X</issn><issn>2576-098X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNpVkUFvFiEQhonR2KbtzbPh6KFbWdhd2JMxjVaTJh5qk97ILDv0QxdYgW3SP-Dvls_Wpp6Y8D7zDsxLyJuWnbUtV-99gjPGZN81XLwgh7yXQ8NGdfPyWX1ATnL-wRjjrFPjIF6TA6EkY6JvD8nvCwzRI834a8Ng8JRCKG5ysThDE2aXC9RreosB816c6bpA9m7O1AUK1McQ1x3kit9BcrWbRkuvYKkCLgvQcr_unN-S2zx1OS5QcKY2RV_tC7iFrjH9PCavLCwZTx7PI3L9-dP38y_N5beLr-cfLxvDJS9NOwxWMtMP0M69GrmcDHIzD0x1dkDFBXZg-GgnaVU3qH40XCk1IygxWcu4OCIfHnzXbfI4GwwlwaLX5Dykex3B6f-V4Hb6Nt7pum0hFeuqw7tHhxTrynLR3mWz_2nAuGUtWM9GoQSXFT19QE2KOSe0T3NatjdUusan_8anuaj42-dve4L_hSX-AMpzmgg</recordid><startdate>20240611</startdate><enddate>20240611</enddate><creator>Ghorbani Tajani, Anahita</creator><creator>Sharma, Aniket</creator><creator>Blouin, Nicolas</creator><creator>Bisha, Bledar</creator><general>American Society for Microbiology</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4196-0425</orcidid><orcidid>https://orcid.org/0000-0002-8447-8495</orcidid><orcidid>https://orcid.org/0000-0003-3145-8025</orcidid></search><sort><creationdate>20240611</creationdate><title>Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork</title><author>Ghorbani Tajani, Anahita ; Sharma, Aniket ; Blouin, Nicolas ; Bisha, Bledar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c272t-166f70c56a1d58927bce2cd6084f6e823e4ac29fb7f846859c2888dea83bff023</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Genome Sequences</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ghorbani Tajani, Anahita</creatorcontrib><creatorcontrib>Sharma, Aniket</creatorcontrib><creatorcontrib>Blouin, Nicolas</creatorcontrib><creatorcontrib>Bisha, Bledar</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbiology resource announcements</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ghorbani Tajani, Anahita</au><au>Sharma, Aniket</au><au>Blouin, Nicolas</au><au>Bisha, Bledar</au><au>Bruno, Vincent Michael</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork</atitle><jtitle>Microbiology resource announcements</jtitle><addtitle>Microbiol Resour Announc</addtitle><date>2024-06-11</date><risdate>2024</risdate><volume>13</volume><issue>6</issue><spage>e0075423</spage><pages>e0075423-</pages><issn>2576-098X</issn><eissn>2576-098X</eissn><abstract>A isolate from retail pork was whole genome sequenced using Illumina NovaSeq6000, with a 5,320,119 bp genome and 51.06% GC content. Several antibiotic resistance genes and plasmids, including , , IncHI2, and p0111 were obtained from subsequent analysis. These findings provide vital insights into generic determinants of antimicrobial resistance (AMR) in this foodborne pathogen.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>38700351</pmid><doi>10.1128/mra.00754-23</doi><orcidid>https://orcid.org/0000-0002-4196-0425</orcidid><orcidid>https://orcid.org/0000-0002-8447-8495</orcidid><orcidid>https://orcid.org/0000-0003-3145-8025</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2576-098X
ispartof Microbiology resource announcements, 2024-06, Vol.13 (6), p.e0075423
issn 2576-098X
2576-098X
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11237804
source PubMed Central
subjects Genome Sequences
title Genome sequence, antibiotic resistance genes, and plasmids in a monophasic variant of Salmonella typhimurium isolated from retail pork
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-26T04%3A11%3A25IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome%20sequence,%20antibiotic%20resistance%20genes,%20and%20plasmids%20in%20a%20monophasic%20variant%20of%20Salmonella%20typhimurium%20isolated%20from%20retail%20pork&rft.jtitle=Microbiology%20resource%20announcements&rft.au=Ghorbani%20Tajani,%20Anahita&rft.date=2024-06-11&rft.volume=13&rft.issue=6&rft.spage=e0075423&rft.pages=e0075423-&rft.issn=2576-098X&rft.eissn=2576-098X&rft_id=info:doi/10.1128/mra.00754-23&rft_dat=%3Cproquest_pubme%3E3050938327%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3050938327&rft_id=info:pmid/38700351&rfr_iscdi=true