ImmRNA: a database of RNAs associated with tumor immunity
The relationship between different ribonucleic acids (RNAs) and tumor immunity has been widely investigated. However, a systematic description of tumor immune-related RNAs in different tumors is still lacking. We collected the relationship of tumor immune-related RNAs from the published literature a...
Gespeichert in:
| Veröffentlicht in: | Database : the journal of biological databases and curation 2024-07, Vol.2024 |
|---|---|
| Hauptverfasser: | , , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | |
| container_start_page | |
| container_title | Database : the journal of biological databases and curation |
| container_volume | 2024 |
| creator | Shen, Fangfang Li, Zelian Wu, Pengfei Wang, Jinpeng |
| description | The relationship between different ribonucleic acids (RNAs) and tumor immunity has been widely investigated. However, a systematic description of tumor immune-related RNAs in different tumors is still lacking. We collected the relationship of tumor immune-related RNAs from the published literature and presented them in a user-friendly interface, "ImmRNA" (http://www.immrna.cn/), to provide a resource to study immune-RNA-cancer regulatory relations. The ImmRNA contains 49 996 curated entries. Each entry includes gene symbols, gene types, target genes, downstream effects, functions, immune cells, and other information. By rearranging and reanalyzing the data, our dataset contains the following key points: (i) providing the links between RNAs and the immune in cancers, (ii) displaying the downstream effects and functions of RNAs, (iii) listing immune cells and immune pathways related to RNA function, (iv) showing the relationship between RNAs and prognostic outcomes, and (v) exhibiting the experimental methods described in the article. ImmRNA provides a valuable resource for understanding the functions of tumor immune-related RNAs. Database URL: http://www.immrna.cn/. |
| doi_str_mv | 10.1093/database/baae052 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11227110</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>3076424037</sourcerecordid><originalsourceid>FETCH-LOGICAL-c308t-616e57815de4a873bbd195dd942940a00a279d1b8b4cada019c10dda60d9ab13</originalsourceid><addsrcrecordid>eNpVkM1PwzAMxSMEYmNw54Ry5FLmNG2TcEHTxMekCSS0e-Q2GQtq2tG0oP33FO1D42TLfu9n6xFyzeCOgeJjgy3mGOw4R7SQxidkyEQqI0gyfnrUD8hFCJ8AmZAyOScDLpWAFPiQqJn376-Te4p0D6P1kvajQDGEunDYWkN_XLuibefrhjrvu8q1m0tytsQy2KtdHZHF0-Ni-hLN355n08k8KjjINspYZlMhWWpsglLwPDdMpcaoJFYJIADGQhmWyzwp0CAwVTAwBjMwCnPGR-Rhi113ubemsFXbYKnXjfPYbHSNTv_fVG6lP-pvzVgcC8agJ9zuCE391dnQau9CYcsSK1t3QXMQWRInwEUvha20aOoQGrs83GGg_xLX-5D0LvHecnP838Gwj5j_Ajphf4s</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>3076424037</pqid></control><display><type>article</type><title>ImmRNA: a database of RNAs associated with tumor immunity</title><source>Oxford Journals Open Access Collection</source><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Shen, Fangfang ; Li, Zelian ; Wu, Pengfei ; Wang, Jinpeng</creator><creatorcontrib>Shen, Fangfang ; Li, Zelian ; Wu, Pengfei ; Wang, Jinpeng</creatorcontrib><description>The relationship between different ribonucleic acids (RNAs) and tumor immunity has been widely investigated. However, a systematic description of tumor immune-related RNAs in different tumors is still lacking. We collected the relationship of tumor immune-related RNAs from the published literature and presented them in a user-friendly interface, "ImmRNA" (http://www.immrna.cn/), to provide a resource to study immune-RNA-cancer regulatory relations. The ImmRNA contains 49 996 curated entries. Each entry includes gene symbols, gene types, target genes, downstream effects, functions, immune cells, and other information. By rearranging and reanalyzing the data, our dataset contains the following key points: (i) providing the links between RNAs and the immune in cancers, (ii) displaying the downstream effects and functions of RNAs, (iii) listing immune cells and immune pathways related to RNA function, (iv) showing the relationship between RNAs and prognostic outcomes, and (v) exhibiting the experimental methods described in the article. ImmRNA provides a valuable resource for understanding the functions of tumor immune-related RNAs. Database URL: http://www.immrna.cn/.</description><identifier>ISSN: 1758-0463</identifier><identifier>EISSN: 1758-0463</identifier><identifier>DOI: 10.1093/database/baae052</identifier><identifier>PMID: 38970503</identifier><language>eng</language><publisher>England: Oxford University Press</publisher><subject>Database Tool ; Databases, Genetic ; Databases, Nucleic Acid ; Humans ; Neoplasms - genetics ; Neoplasms - immunology ; RNA - genetics ; RNA - immunology ; RNA, Neoplasm - genetics ; RNA, Neoplasm - immunology</subject><ispartof>Database : the journal of biological databases and curation, 2024-07, Vol.2024</ispartof><rights>The Author(s) 2024. Published by Oxford University Press.</rights><rights>The Author(s) 2024. Published by Oxford University Press. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c308t-616e57815de4a873bbd195dd942940a00a279d1b8b4cada019c10dda60d9ab13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11227110/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11227110/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38970503$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Shen, Fangfang</creatorcontrib><creatorcontrib>Li, Zelian</creatorcontrib><creatorcontrib>Wu, Pengfei</creatorcontrib><creatorcontrib>Wang, Jinpeng</creatorcontrib><title>ImmRNA: a database of RNAs associated with tumor immunity</title><title>Database : the journal of biological databases and curation</title><addtitle>Database (Oxford)</addtitle><description>The relationship between different ribonucleic acids (RNAs) and tumor immunity has been widely investigated. However, a systematic description of tumor immune-related RNAs in different tumors is still lacking. We collected the relationship of tumor immune-related RNAs from the published literature and presented them in a user-friendly interface, "ImmRNA" (http://www.immrna.cn/), to provide a resource to study immune-RNA-cancer regulatory relations. The ImmRNA contains 49 996 curated entries. Each entry includes gene symbols, gene types, target genes, downstream effects, functions, immune cells, and other information. By rearranging and reanalyzing the data, our dataset contains the following key points: (i) providing the links between RNAs and the immune in cancers, (ii) displaying the downstream effects and functions of RNAs, (iii) listing immune cells and immune pathways related to RNA function, (iv) showing the relationship between RNAs and prognostic outcomes, and (v) exhibiting the experimental methods described in the article. ImmRNA provides a valuable resource for understanding the functions of tumor immune-related RNAs. Database URL: http://www.immrna.cn/.</description><subject>Database Tool</subject><subject>Databases, Genetic</subject><subject>Databases, Nucleic Acid</subject><subject>Humans</subject><subject>Neoplasms - genetics</subject><subject>Neoplasms - immunology</subject><subject>RNA - genetics</subject><subject>RNA - immunology</subject><subject>RNA, Neoplasm - genetics</subject><subject>RNA, Neoplasm - immunology</subject><issn>1758-0463</issn><issn>1758-0463</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkM1PwzAMxSMEYmNw54Ry5FLmNG2TcEHTxMekCSS0e-Q2GQtq2tG0oP33FO1D42TLfu9n6xFyzeCOgeJjgy3mGOw4R7SQxidkyEQqI0gyfnrUD8hFCJ8AmZAyOScDLpWAFPiQqJn376-Te4p0D6P1kvajQDGEunDYWkN_XLuibefrhjrvu8q1m0tytsQy2KtdHZHF0-Ni-hLN355n08k8KjjINspYZlMhWWpsglLwPDdMpcaoJFYJIADGQhmWyzwp0CAwVTAwBjMwCnPGR-Rhi113ubemsFXbYKnXjfPYbHSNTv_fVG6lP-pvzVgcC8agJ9zuCE391dnQau9CYcsSK1t3QXMQWRInwEUvha20aOoQGrs83GGg_xLX-5D0LvHecnP838Gwj5j_Ajphf4s</recordid><startdate>20240706</startdate><enddate>20240706</enddate><creator>Shen, Fangfang</creator><creator>Li, Zelian</creator><creator>Wu, Pengfei</creator><creator>Wang, Jinpeng</creator><general>Oxford University Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20240706</creationdate><title>ImmRNA: a database of RNAs associated with tumor immunity</title><author>Shen, Fangfang ; Li, Zelian ; Wu, Pengfei ; Wang, Jinpeng</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c308t-616e57815de4a873bbd195dd942940a00a279d1b8b4cada019c10dda60d9ab13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Database Tool</topic><topic>Databases, Genetic</topic><topic>Databases, Nucleic Acid</topic><topic>Humans</topic><topic>Neoplasms - genetics</topic><topic>Neoplasms - immunology</topic><topic>RNA - genetics</topic><topic>RNA - immunology</topic><topic>RNA, Neoplasm - genetics</topic><topic>RNA, Neoplasm - immunology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shen, Fangfang</creatorcontrib><creatorcontrib>Li, Zelian</creatorcontrib><creatorcontrib>Wu, Pengfei</creatorcontrib><creatorcontrib>Wang, Jinpeng</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Database : the journal of biological databases and curation</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shen, Fangfang</au><au>Li, Zelian</au><au>Wu, Pengfei</au><au>Wang, Jinpeng</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ImmRNA: a database of RNAs associated with tumor immunity</atitle><jtitle>Database : the journal of biological databases and curation</jtitle><addtitle>Database (Oxford)</addtitle><date>2024-07-06</date><risdate>2024</risdate><volume>2024</volume><issn>1758-0463</issn><eissn>1758-0463</eissn><abstract>The relationship between different ribonucleic acids (RNAs) and tumor immunity has been widely investigated. However, a systematic description of tumor immune-related RNAs in different tumors is still lacking. We collected the relationship of tumor immune-related RNAs from the published literature and presented them in a user-friendly interface, "ImmRNA" (http://www.immrna.cn/), to provide a resource to study immune-RNA-cancer regulatory relations. The ImmRNA contains 49 996 curated entries. Each entry includes gene symbols, gene types, target genes, downstream effects, functions, immune cells, and other information. By rearranging and reanalyzing the data, our dataset contains the following key points: (i) providing the links between RNAs and the immune in cancers, (ii) displaying the downstream effects and functions of RNAs, (iii) listing immune cells and immune pathways related to RNA function, (iv) showing the relationship between RNAs and prognostic outcomes, and (v) exhibiting the experimental methods described in the article. ImmRNA provides a valuable resource for understanding the functions of tumor immune-related RNAs. Database URL: http://www.immrna.cn/.</abstract><cop>England</cop><pub>Oxford University Press</pub><pmid>38970503</pmid><doi>10.1093/database/baae052</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1758-0463 |
| ispartof | Database : the journal of biological databases and curation, 2024-07, Vol.2024 |
| issn | 1758-0463 1758-0463 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11227110 |
| source | Oxford Journals Open Access Collection; MEDLINE; DOAJ Directory of Open Access Journals; EZB-FREE-00999 freely available EZB journals; PubMed Central |
| subjects | Database Tool Databases, Genetic Databases, Nucleic Acid Humans Neoplasms - genetics Neoplasms - immunology RNA - genetics RNA - immunology RNA, Neoplasm - genetics RNA, Neoplasm - immunology |
| title | ImmRNA: a database of RNAs associated with tumor immunity |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-15T15%3A53%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=ImmRNA:%20a%20database%20of%20RNAs%20associated%20with%20tumor%20immunity&rft.jtitle=Database%20:%20the%20journal%20of%20biological%20databases%20and%20curation&rft.au=Shen,%20Fangfang&rft.date=2024-07-06&rft.volume=2024&rft.issn=1758-0463&rft.eissn=1758-0463&rft_id=info:doi/10.1093/database/baae052&rft_dat=%3Cproquest_pubme%3E3076424037%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=3076424037&rft_id=info:pmid/38970503&rfr_iscdi=true |