Upgrade of crystallography beamline BL19U1 at the Shanghai Synchrotron Radiation Facility
BL19U1, an energy‐tunable protein complex crystallography beamline at the Shanghai Synchrotron Radiation Facility, has emerged as one of the most productive MX beamlines since opening to the public in July 2015. As of October 2023, it has contributed to over 2000 protein structures deposited in the...
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Veröffentlicht in: | Journal of applied crystallography 2024-06, Vol.57 (3), p.630-637 |
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creator | Xiao, Qingjie Wu, Tingting Bao, Kangwen Tang, Jianchao Zhang, Yupu Zhang, Weizhe Zhu, Zhongjie Gu, Yijun Zhou, Shuyu Li, Chunyu Lu, Lanlu Jiang, Luozhen Liu, Yang Qin, Wenming |
description | BL19U1, an energy‐tunable protein complex crystallography beamline at the Shanghai Synchrotron Radiation Facility, has emerged as one of the most productive MX beamlines since opening to the public in July 2015. As of October 2023, it has contributed to over 2000 protein structures deposited in the Protein Data Bank (PDB), resulting in the publication of more than 1000 scientific papers. In response to increasing interest in structure‐based drug design utilizing X‐ray crystallography for fragment library screening, enhancements have been implemented in both hardware and data collection systems on the beamline to optimize efficiency. Hardware upgrades include the transition from MD2 to MD2S for the diffractometer, alongside the installation of a humidity controller featuring a rapid nozzle exchanger. This allows users to opt for either low‐temperature or room‐temperature data collection modes. The control system has been upgraded from Blu‐Ice to MXCuBE3, which supports website‐mode data collection, providing enhanced compatibility and easy expansion with new features. An automated data processing pipeline has also been developed to offer users real‐time feedback on data quality.
The protein complex crystallography beamline BL19U1 is preparing for the establishment of an automated drug screening platform by upgrading both hardware and data collection control systems to optimize efficiency. The upgrade of the experimental station devices and data collection control system on the BL19U1 beamline are reported in this paper. |
doi_str_mv | 10.1107/S1600576724002188 |
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The protein complex crystallography beamline BL19U1 is preparing for the establishment of an automated drug screening platform by upgrading both hardware and data collection control systems to optimize efficiency. The upgrade of the experimental station devices and data collection control system on the BL19U1 beamline are reported in this paper.</description><identifier>ISSN: 1600-5767</identifier><identifier>ISSN: 0021-8898</identifier><identifier>EISSN: 1600-5767</identifier><identifier>DOI: 10.1107/S1600576724002188</identifier><identifier>PMID: 38846766</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Control systems ; Crystallography ; crystallography beamline BL19U1 ; Data collection ; Data processing ; Drug development ; Hardware ; Proteins ; Radiation ; Research Papers ; Shanghai Synchrotron Radiation Facility ; Synchrotron radiation ; upgrades ; Upgrading</subject><ispartof>Journal of applied crystallography, 2024-06, Vol.57 (3), p.630-637</ispartof><rights>2024 Qingjie Xiao et al. published by IUCr Journals.</rights><rights>Qingjie Xiao et al. 2024.</rights><rights>2024. This article is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>Qingjie Xiao et al. 2024 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c3606-2bfd056782285073b35a8db09219ac83098ec25548a6bcab0ea26370383e33293</cites><orcidid>0000-0002-8157-6647 ; 0000-0001-6604-2228 ; 0000-0001-6741-8266</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS1600576724002188$$EPDF$$P50$$Gwiley$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS1600576724002188$$EHTML$$P50$$Gwiley$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38846766$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xiao, Qingjie</creatorcontrib><creatorcontrib>Wu, Tingting</creatorcontrib><creatorcontrib>Bao, Kangwen</creatorcontrib><creatorcontrib>Tang, Jianchao</creatorcontrib><creatorcontrib>Zhang, Yupu</creatorcontrib><creatorcontrib>Zhang, Weizhe</creatorcontrib><creatorcontrib>Zhu, Zhongjie</creatorcontrib><creatorcontrib>Gu, Yijun</creatorcontrib><creatorcontrib>Zhou, Shuyu</creatorcontrib><creatorcontrib>Li, Chunyu</creatorcontrib><creatorcontrib>Lu, Lanlu</creatorcontrib><creatorcontrib>Jiang, Luozhen</creatorcontrib><creatorcontrib>Liu, Yang</creatorcontrib><creatorcontrib>Qin, Wenming</creatorcontrib><title>Upgrade of crystallography beamline BL19U1 at the Shanghai Synchrotron Radiation Facility</title><title>Journal of applied crystallography</title><addtitle>J Appl Crystallogr</addtitle><description>BL19U1, an energy‐tunable protein complex crystallography beamline at the Shanghai Synchrotron Radiation Facility, has emerged as one of the most productive MX beamlines since opening to the public in July 2015. As of October 2023, it has contributed to over 2000 protein structures deposited in the Protein Data Bank (PDB), resulting in the publication of more than 1000 scientific papers. In response to increasing interest in structure‐based drug design utilizing X‐ray crystallography for fragment library screening, enhancements have been implemented in both hardware and data collection systems on the beamline to optimize efficiency. Hardware upgrades include the transition from MD2 to MD2S for the diffractometer, alongside the installation of a humidity controller featuring a rapid nozzle exchanger. This allows users to opt for either low‐temperature or room‐temperature data collection modes. The control system has been upgraded from Blu‐Ice to MXCuBE3, which supports website‐mode data collection, providing enhanced compatibility and easy expansion with new features. An automated data processing pipeline has also been developed to offer users real‐time feedback on data quality.
The protein complex crystallography beamline BL19U1 is preparing for the establishment of an automated drug screening platform by upgrading both hardware and data collection control systems to optimize efficiency. The upgrade of the experimental station devices and data collection control system on the BL19U1 beamline are reported in this paper.</description><subject>Control systems</subject><subject>Crystallography</subject><subject>crystallography beamline BL19U1</subject><subject>Data collection</subject><subject>Data processing</subject><subject>Drug development</subject><subject>Hardware</subject><subject>Proteins</subject><subject>Radiation</subject><subject>Research Papers</subject><subject>Shanghai Synchrotron Radiation Facility</subject><subject>Synchrotron radiation</subject><subject>upgrades</subject><subject>Upgrading</subject><issn>1600-5767</issn><issn>0021-8898</issn><issn>1600-5767</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNqFkUtvEzEUhS0Eom3gB3RTWWLDJsWP8WNWqER9oUhIDVmwsu54nIwrZ5zaE9D8-zpKqQosWPnq-LtHPj4InVJyTilRnxZUEiKUVKwihFGtX6HjvTTda69fzEfoJOd7QmhB2Vt0xLWupJLyGP1YbtcJWofjCts05gFCiEXZdiNuHGyC7x3-Mqf1kmIY8NA5vOigX3fg8WLsbZfikGKP76D1MPgyXYH1wQ_jO_RmBSG790_nBC2vLr_Pbqbzb9e3s4v51HJJ5JQ1q5YIqTRjWhDFGy5Atw2pGa3Bak5q7SwTotIgGwsNccAkV4Rr7jhnNZ-gzwff7a7ZuNa6fkgQzDb5DaTRRPDmz5ved2YdfxpKqaBSVsXh45NDig87lwez8dm6EKB3cZcNJ1LUqtaKFfTDX-h93KW-5NtTleCUlwwTRA-UTTHn5FbPr6HE7Jsz_zRXds5exnje-F1VAeoD8MsHN_7f0Xyd3bHbpSifyx8BbjSiqQ</recordid><startdate>202406</startdate><enddate>202406</enddate><creator>Xiao, Qingjie</creator><creator>Wu, Tingting</creator><creator>Bao, Kangwen</creator><creator>Tang, Jianchao</creator><creator>Zhang, Yupu</creator><creator>Zhang, Weizhe</creator><creator>Zhu, Zhongjie</creator><creator>Gu, Yijun</creator><creator>Zhou, Shuyu</creator><creator>Li, Chunyu</creator><creator>Lu, Lanlu</creator><creator>Jiang, Luozhen</creator><creator>Liu, Yang</creator><creator>Qin, Wenming</creator><general>International Union of Crystallography</general><general>Blackwell Publishing Ltd</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>7U5</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>L7M</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8157-6647</orcidid><orcidid>https://orcid.org/0000-0001-6604-2228</orcidid><orcidid>https://orcid.org/0000-0001-6741-8266</orcidid></search><sort><creationdate>202406</creationdate><title>Upgrade of crystallography beamline BL19U1 at the Shanghai Synchrotron Radiation Facility</title><author>Xiao, Qingjie ; Wu, Tingting ; Bao, Kangwen ; Tang, Jianchao ; Zhang, Yupu ; Zhang, Weizhe ; Zhu, Zhongjie ; Gu, Yijun ; Zhou, Shuyu ; Li, Chunyu ; Lu, Lanlu ; Jiang, Luozhen ; Liu, Yang ; Qin, Wenming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3606-2bfd056782285073b35a8db09219ac83098ec25548a6bcab0ea26370383e33293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Control systems</topic><topic>Crystallography</topic><topic>crystallography beamline BL19U1</topic><topic>Data collection</topic><topic>Data processing</topic><topic>Drug development</topic><topic>Hardware</topic><topic>Proteins</topic><topic>Radiation</topic><topic>Research Papers</topic><topic>Shanghai Synchrotron Radiation Facility</topic><topic>Synchrotron radiation</topic><topic>upgrades</topic><topic>Upgrading</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xiao, Qingjie</creatorcontrib><creatorcontrib>Wu, Tingting</creatorcontrib><creatorcontrib>Bao, Kangwen</creatorcontrib><creatorcontrib>Tang, Jianchao</creatorcontrib><creatorcontrib>Zhang, Yupu</creatorcontrib><creatorcontrib>Zhang, Weizhe</creatorcontrib><creatorcontrib>Zhu, Zhongjie</creatorcontrib><creatorcontrib>Gu, Yijun</creatorcontrib><creatorcontrib>Zhou, Shuyu</creatorcontrib><creatorcontrib>Li, Chunyu</creatorcontrib><creatorcontrib>Lu, Lanlu</creatorcontrib><creatorcontrib>Jiang, Luozhen</creatorcontrib><creatorcontrib>Liu, Yang</creatorcontrib><creatorcontrib>Qin, Wenming</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>Materials Research Database</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of applied crystallography</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xiao, Qingjie</au><au>Wu, Tingting</au><au>Bao, Kangwen</au><au>Tang, Jianchao</au><au>Zhang, Yupu</au><au>Zhang, Weizhe</au><au>Zhu, Zhongjie</au><au>Gu, Yijun</au><au>Zhou, Shuyu</au><au>Li, Chunyu</au><au>Lu, Lanlu</au><au>Jiang, Luozhen</au><au>Liu, Yang</au><au>Qin, Wenming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Upgrade of crystallography beamline BL19U1 at the Shanghai Synchrotron Radiation Facility</atitle><jtitle>Journal of applied crystallography</jtitle><addtitle>J Appl Crystallogr</addtitle><date>2024-06</date><risdate>2024</risdate><volume>57</volume><issue>3</issue><spage>630</spage><epage>637</epage><pages>630-637</pages><issn>1600-5767</issn><issn>0021-8898</issn><eissn>1600-5767</eissn><abstract>BL19U1, an energy‐tunable protein complex crystallography beamline at the Shanghai Synchrotron Radiation Facility, has emerged as one of the most productive MX beamlines since opening to the public in July 2015. 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The protein complex crystallography beamline BL19U1 is preparing for the establishment of an automated drug screening platform by upgrading both hardware and data collection control systems to optimize efficiency. The upgrade of the experimental station devices and data collection control system on the BL19U1 beamline are reported in this paper.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>38846766</pmid><doi>10.1107/S1600576724002188</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-8157-6647</orcidid><orcidid>https://orcid.org/0000-0001-6604-2228</orcidid><orcidid>https://orcid.org/0000-0001-6741-8266</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Control systems Crystallography crystallography beamline BL19U1 Data collection Data processing Drug development Hardware Proteins Radiation Research Papers Shanghai Synchrotron Radiation Facility Synchrotron radiation upgrades Upgrading |
title | Upgrade of crystallography beamline BL19U1 at the Shanghai Synchrotron Radiation Facility |
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