Clinical phenotype and outcome of persistent SARS-CoV-2 replication in immunocompromised hosts: a retrospective observational study in the Omicron era

Purpose This study aims to describe clinical, virological and radiological characteristics as well as treatment strategies and outcomes of immunocompromised patients with persistent SARS-CoV-2 replication. Methods We performed a retrospective cohort study of immunocompromised patients at the Univers...

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Veröffentlicht in:Infection 2024-06, Vol.52 (3), p.923-933
Hauptverfasser: Götz, Veronika, Mathé, Philipp, Agarwal, Prerana, Hornuss, Daniel, Pfau, Stefanie, Panning, Marcus, Prager, Eric, Voll, Reinhard E., Engelhardt, Monika, Frye, Björn C., Bamberg, Fabian, Fuchs, Jonas, Müller, Matthias, Wagner, Dirk, Rieg, Siegbert
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container_end_page 933
container_issue 3
container_start_page 923
container_title Infection
container_volume 52
creator Götz, Veronika
Mathé, Philipp
Agarwal, Prerana
Hornuss, Daniel
Pfau, Stefanie
Panning, Marcus
Prager, Eric
Voll, Reinhard E.
Engelhardt, Monika
Frye, Björn C.
Bamberg, Fabian
Fuchs, Jonas
Müller, Matthias
Wagner, Dirk
Rieg, Siegbert
description Purpose This study aims to describe clinical, virological and radiological characteristics as well as treatment strategies and outcomes of immunocompromised patients with persistent SARS-CoV-2 replication. Methods We performed a retrospective cohort study of immunocompromised patients at the University Medical Center Freiburg between 01/2022 and 05/2023. Patients with substantial immunosuppression and persistent SARS-CoV-2 detection (Ct-value  10 days. In 30% (8/27) of patients with repeated CT scans, we found the emergence of chronic pulmonary changes, which were more frequently in patients with B cell depletion (37%, 7/19) compared to patients with organ transplantation (12%, 2/17). Conclusion Ongoing SARS-CoV-2 replication in the lower respiratory tract is a relevant differential diagnosis in patients with severe immunosuppression and continuous cough, fever or dyspnoea even if nasopharyngeal swabs test negative for SARS-CoV-2. Especially in B cell-depleted patients, this may lead to inflammatory or fibrotic-like pulmonary changes, which are partially reversible after inhibition of viral replication. Antiviral therapy seems to be most effective in combination and over a prolonged period of time of > 10 days. Trial registration number DRKS 00027299.
doi_str_mv 10.1007/s15010-023-02138-0
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Methods We performed a retrospective cohort study of immunocompromised patients at the University Medical Center Freiburg between 01/2022 and 05/2023. Patients with substantial immunosuppression and persistent SARS-CoV-2 detection (Ct-value &lt; 30 after 14 days) were included. Results 36 patients in our cohort reported mainly fever, dyspnoea or continuous cough. Viral load was significantly higher in concurrent samples taken from the lower respiratory tract (Ct-value = 26) than from the upper respiratory tract (Ct-value = 34). Time of detectable viral RNA after start of antiviral treatment was shorter in patients receiving two antivirals (median 15 days vs. 31 days with one antiviral agent). Short-course antiviral therapy (≤ 5 days) was less efficient in reduction of symptoms and viral load than prolonged therapy &gt; 10 days. In 30% (8/27) of patients with repeated CT scans, we found the emergence of chronic pulmonary changes, which were more frequently in patients with B cell depletion (37%, 7/19) compared to patients with organ transplantation (12%, 2/17). Conclusion Ongoing SARS-CoV-2 replication in the lower respiratory tract is a relevant differential diagnosis in patients with severe immunosuppression and continuous cough, fever or dyspnoea even if nasopharyngeal swabs test negative for SARS-CoV-2. Especially in B cell-depleted patients, this may lead to inflammatory or fibrotic-like pulmonary changes, which are partially reversible after inhibition of viral replication. Antiviral therapy seems to be most effective in combination and over a prolonged period of time of &gt; 10 days. Trial registration number DRKS 00027299.</description><identifier>ISSN: 0300-8126</identifier><identifier>ISSN: 1439-0973</identifier><identifier>EISSN: 1439-0973</identifier><identifier>DOI: 10.1007/s15010-023-02138-0</identifier><identifier>PMID: 38095753</identifier><language>eng</language><publisher>Berlin/Heidelberg: Springer Berlin Heidelberg</publisher><subject>Adult ; Aged ; Aged, 80 and over ; Antiviral agents ; Antiviral Agents - therapeutic use ; Computed tomography ; Cough ; COVID-19 ; COVID-19 - diagnosis ; COVID-19 - immunology ; COVID-19 - physiopathology ; COVID-19 - virology ; COVID-19 Drug Treatment ; Depletion ; Differential diagnosis ; Dyspnea ; Family Medicine ; Female ; Fever ; General Practice ; Health care facilities ; Health services ; Humans ; Immunocompromised Host ; Immunocompromised hosts ; Immunosuppression ; Infectious Diseases ; Inflammation ; Internal Medicine ; Male ; Medicine ; Medicine &amp; Public Health ; Middle Aged ; Observational studies ; Patients ; Phenotype ; Phenotypes ; Replication ; Respiration ; Respiratory tract ; Retrospective Studies ; SARS-CoV-2 ; Severe acute respiratory syndrome coronavirus 2 ; Therapy ; Treatment Outcome ; Viral diseases ; Viral Load - drug effects ; Virus Replication</subject><ispartof>Infection, 2024-06, Vol.52 (3), p.923-933</ispartof><rights>The Author(s) 2023</rights><rights>2023. The Author(s).</rights><rights>The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c426t-206b4ef9c41f156b69eab56397b53c9c535bd3817383ba1e6ae06622a9a685a43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s15010-023-02138-0$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s15010-023-02138-0$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,27923,27924,41487,42556,51318</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38095753$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Götz, Veronika</creatorcontrib><creatorcontrib>Mathé, Philipp</creatorcontrib><creatorcontrib>Agarwal, Prerana</creatorcontrib><creatorcontrib>Hornuss, Daniel</creatorcontrib><creatorcontrib>Pfau, Stefanie</creatorcontrib><creatorcontrib>Panning, Marcus</creatorcontrib><creatorcontrib>Prager, Eric</creatorcontrib><creatorcontrib>Voll, Reinhard E.</creatorcontrib><creatorcontrib>Engelhardt, Monika</creatorcontrib><creatorcontrib>Frye, Björn C.</creatorcontrib><creatorcontrib>Bamberg, Fabian</creatorcontrib><creatorcontrib>Fuchs, Jonas</creatorcontrib><creatorcontrib>Müller, Matthias</creatorcontrib><creatorcontrib>Wagner, Dirk</creatorcontrib><creatorcontrib>Rieg, Siegbert</creatorcontrib><title>Clinical phenotype and outcome of persistent SARS-CoV-2 replication in immunocompromised hosts: a retrospective observational study in the Omicron era</title><title>Infection</title><addtitle>Infection</addtitle><addtitle>Infection</addtitle><description>Purpose This study aims to describe clinical, virological and radiological characteristics as well as treatment strategies and outcomes of immunocompromised patients with persistent SARS-CoV-2 replication. Methods We performed a retrospective cohort study of immunocompromised patients at the University Medical Center Freiburg between 01/2022 and 05/2023. Patients with substantial immunosuppression and persistent SARS-CoV-2 detection (Ct-value &lt; 30 after 14 days) were included. Results 36 patients in our cohort reported mainly fever, dyspnoea or continuous cough. Viral load was significantly higher in concurrent samples taken from the lower respiratory tract (Ct-value = 26) than from the upper respiratory tract (Ct-value = 34). Time of detectable viral RNA after start of antiviral treatment was shorter in patients receiving two antivirals (median 15 days vs. 31 days with one antiviral agent). Short-course antiviral therapy (≤ 5 days) was less efficient in reduction of symptoms and viral load than prolonged therapy &gt; 10 days. In 30% (8/27) of patients with repeated CT scans, we found the emergence of chronic pulmonary changes, which were more frequently in patients with B cell depletion (37%, 7/19) compared to patients with organ transplantation (12%, 2/17). Conclusion Ongoing SARS-CoV-2 replication in the lower respiratory tract is a relevant differential diagnosis in patients with severe immunosuppression and continuous cough, fever or dyspnoea even if nasopharyngeal swabs test negative for SARS-CoV-2. Especially in B cell-depleted patients, this may lead to inflammatory or fibrotic-like pulmonary changes, which are partially reversible after inhibition of viral replication. Antiviral therapy seems to be most effective in combination and over a prolonged period of time of &gt; 10 days. 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Mathé, Philipp ; Agarwal, Prerana ; Hornuss, Daniel ; Pfau, Stefanie ; Panning, Marcus ; Prager, Eric ; Voll, Reinhard E. ; Engelhardt, Monika ; Frye, Björn C. ; Bamberg, Fabian ; Fuchs, Jonas ; Müller, Matthias ; Wagner, Dirk ; Rieg, Siegbert</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c426t-206b4ef9c41f156b69eab56397b53c9c535bd3817383ba1e6ae06622a9a685a43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Aged, 80 and over</topic><topic>Antiviral agents</topic><topic>Antiviral Agents - therapeutic use</topic><topic>Computed tomography</topic><topic>Cough</topic><topic>COVID-19</topic><topic>COVID-19 - diagnosis</topic><topic>COVID-19 - immunology</topic><topic>COVID-19 - physiopathology</topic><topic>COVID-19 - virology</topic><topic>COVID-19 Drug Treatment</topic><topic>Depletion</topic><topic>Differential diagnosis</topic><topic>Dyspnea</topic><topic>Family Medicine</topic><topic>Female</topic><topic>Fever</topic><topic>General Practice</topic><topic>Health care facilities</topic><topic>Health services</topic><topic>Humans</topic><topic>Immunocompromised Host</topic><topic>Immunocompromised hosts</topic><topic>Immunosuppression</topic><topic>Infectious Diseases</topic><topic>Inflammation</topic><topic>Internal Medicine</topic><topic>Male</topic><topic>Medicine</topic><topic>Medicine &amp; 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Methods We performed a retrospective cohort study of immunocompromised patients at the University Medical Center Freiburg between 01/2022 and 05/2023. Patients with substantial immunosuppression and persistent SARS-CoV-2 detection (Ct-value &lt; 30 after 14 days) were included. Results 36 patients in our cohort reported mainly fever, dyspnoea or continuous cough. Viral load was significantly higher in concurrent samples taken from the lower respiratory tract (Ct-value = 26) than from the upper respiratory tract (Ct-value = 34). Time of detectable viral RNA after start of antiviral treatment was shorter in patients receiving two antivirals (median 15 days vs. 31 days with one antiviral agent). Short-course antiviral therapy (≤ 5 days) was less efficient in reduction of symptoms and viral load than prolonged therapy &gt; 10 days. In 30% (8/27) of patients with repeated CT scans, we found the emergence of chronic pulmonary changes, which were more frequently in patients with B cell depletion (37%, 7/19) compared to patients with organ transplantation (12%, 2/17). Conclusion Ongoing SARS-CoV-2 replication in the lower respiratory tract is a relevant differential diagnosis in patients with severe immunosuppression and continuous cough, fever or dyspnoea even if nasopharyngeal swabs test negative for SARS-CoV-2. Especially in B cell-depleted patients, this may lead to inflammatory or fibrotic-like pulmonary changes, which are partially reversible after inhibition of viral replication. Antiviral therapy seems to be most effective in combination and over a prolonged period of time of &gt; 10 days. 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subjects Adult
Aged
Aged, 80 and over
Antiviral agents
Antiviral Agents - therapeutic use
Computed tomography
Cough
COVID-19
COVID-19 - diagnosis
COVID-19 - immunology
COVID-19 - physiopathology
COVID-19 - virology
COVID-19 Drug Treatment
Depletion
Differential diagnosis
Dyspnea
Family Medicine
Female
Fever
General Practice
Health care facilities
Health services
Humans
Immunocompromised Host
Immunocompromised hosts
Immunosuppression
Infectious Diseases
Inflammation
Internal Medicine
Male
Medicine
Medicine & Public Health
Middle Aged
Observational studies
Patients
Phenotype
Phenotypes
Replication
Respiration
Respiratory tract
Retrospective Studies
SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2
Therapy
Treatment Outcome
Viral diseases
Viral Load - drug effects
Virus Replication
title Clinical phenotype and outcome of persistent SARS-CoV-2 replication in immunocompromised hosts: a retrospective observational study in the Omicron era
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