A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation
Background The cancer-associated biological mechanisms and the implementation of immunotherapy are heavily impacted by the activities of T cells, consequently influencing the effectiveness of therapeutic interventions. Nevertheless, the mechanistic actions of T-cell proliferation in response to immu...
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Veröffentlicht in: | Clinical & translational oncology 2024-06, Vol.26 (6), p.1368-1383 |
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description | Background
The cancer-associated biological mechanisms and the implementation of immunotherapy are heavily impacted by the activities of T cells, consequently influencing the effectiveness of therapeutic interventions. Nevertheless, the mechanistic actions of T-cell proliferation in response to immunotherapy and the overall prognosis of individuals diagnosed with hepatocellular carcinoma (HCC) remains insufficiently understood. The present work seeks to present a comprehensive analysis immune landscape in the context of HCC.
Methods
To achieve this objective, both clinical data and RNA sequencing data were acquired from authoritative databases such as The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO).
Results
Through the utilization of consensus clustering techniques, distinct molecular subtypes associated with T-cell proliferation were delineated. Following this, seven genes of prognostic significance were identified via a combination of Cox and Lasso regression analyses. By integrating these genes into a prognostic signature, the predictive capability of the model was verified through an examination of internal and external datasets. Moreover, immunohistochemistry and qRT-PCR tests have verified the reliability of prognostic markers. Notably, the high-risk group exhibited elevated expression of immune checkpoint genes as well as higher benefit in terms of drug sensitivity testing, as determined by the Chi-square test (
P
|
doi_str_mv | 10.1007/s12094-023-03363-7 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_11108937</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2904575265</sourcerecordid><originalsourceid>FETCH-LOGICAL-c398t-7b07d1f47fb9b1943436505ac3bfb4a9d2a45e3debca09f15a9b74d6204221bc3</originalsourceid><addsrcrecordid>eNp9kctu1TAQhi0EoqXwAiyQl2wCviU-ZoOqiptUiU1ZW7bj5LhKPMF2IvWdeEgcTqnKhpVHM_98M-MfodeUvKOEyPeZMqJEQxhvCOcdb-QTdE47pRpO2vbpo_gMvcj5ltSoo_Q5OuMHyvhBinP06xJH2PyElwRjhFyCwzP0NTFAqknfB1dCHPFiSvCx4LymLWxmwib2OMzzGqEcfTLLHU4-LxBz2Hz0OeMQ8dHXNnB-mtbJJOxMciHCbD7UYg7jseyqArgSarDBtPl5HwIDvmn2tn2tKQyVXwLEl-jZYKbsX92_F-jH5083V1-b6-9fvl1dXjeOq0NppCWyp4OQg1WWKsEF71rSGsftYIVRPTOi9bz31hmiBtoaZaXoO0YEY9Q6foE-nrjLamffu7pSMpNeUphNutNggv63EsNRj7BpSik5KC4r4e09IcHP1eei55D3g0z0sGbNFBGtbFnXVik7SV2CnJMfHuZQonef9clnXX3Wf3zWO__N4w0fWv4aWwX8JMi1FEef9C2sKdZf-x_2N-KnusQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2904575265</pqid></control><display><type>article</type><title>A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation</title><source>MEDLINE</source><source>SpringerLink Journals</source><creator>Tang, Shengjie ; Sun, Rui ; Tang, Kechao ; Wei, Xiang ; Liu, Ming ; Zhang, Huabing</creator><creatorcontrib>Tang, Shengjie ; Sun, Rui ; Tang, Kechao ; Wei, Xiang ; Liu, Ming ; Zhang, Huabing</creatorcontrib><description>Background
The cancer-associated biological mechanisms and the implementation of immunotherapy are heavily impacted by the activities of T cells, consequently influencing the effectiveness of therapeutic interventions. Nevertheless, the mechanistic actions of T-cell proliferation in response to immunotherapy and the overall prognosis of individuals diagnosed with hepatocellular carcinoma (HCC) remains insufficiently understood. The present work seeks to present a comprehensive analysis immune landscape in the context of HCC.
Methods
To achieve this objective, both clinical data and RNA sequencing data were acquired from authoritative databases such as The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO).
Results
Through the utilization of consensus clustering techniques, distinct molecular subtypes associated with T-cell proliferation were delineated. Following this, seven genes of prognostic significance were identified via a combination of Cox and Lasso regression analyses. By integrating these genes into a prognostic signature, the predictive capability of the model was verified through an examination of internal and external datasets. Moreover, immunohistochemistry and qRT-PCR tests have verified the reliability of prognostic markers. Notably, the high-risk group exhibited elevated expression of immune checkpoint genes as well as higher benefit in terms of drug sensitivity testing, as determined by the Chi-square test (
P
< 0.001). The risk score derived from the prognostic signature depicted considerable efficacy in predicting the survival outcomes of HCC cases.
Conclusions
Overall, prognostic markers may become valuable predictive tool for individuals diagnosed with HCC, allowing for the prediction of their prognosis as well as the assessment of their immunological condition and response to immunotherapy.</description><identifier>ISSN: 1699-3055</identifier><identifier>ISSN: 1699-048X</identifier><identifier>EISSN: 1699-3055</identifier><identifier>DOI: 10.1007/s12094-023-03363-7</identifier><identifier>PMID: 38123874</identifier><language>eng</language><publisher>Cham: Springer International Publishing</publisher><subject>Biomarkers, Tumor - genetics ; Carcinoma, Hepatocellular - genetics ; Carcinoma, Hepatocellular - immunology ; Carcinoma, Hepatocellular - mortality ; Carcinoma, Hepatocellular - pathology ; Carcinoma, Hepatocellular - therapy ; Cell Proliferation ; Female ; Humans ; Immunotherapy - methods ; Liver Neoplasms - genetics ; Liver Neoplasms - immunology ; Liver Neoplasms - mortality ; Liver Neoplasms - pathology ; Liver Neoplasms - therapy ; Male ; Medicine ; Medicine & Public Health ; Middle Aged ; Oncology ; Prognosis ; Research Article ; T-Lymphocytes - immunology</subject><ispartof>Clinical & translational oncology, 2024-06, Vol.26 (6), p.1368-1383</ispartof><rights>The Author(s) 2023</rights><rights>2023. The Author(s).</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c398t-7b07d1f47fb9b1943436505ac3bfb4a9d2a45e3debca09f15a9b74d6204221bc3</cites><orcidid>0000-0001-8402-7830</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12094-023-03363-7$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12094-023-03363-7$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,776,780,881,27903,27904,41467,42536,51297</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38123874$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Tang, Shengjie</creatorcontrib><creatorcontrib>Sun, Rui</creatorcontrib><creatorcontrib>Tang, Kechao</creatorcontrib><creatorcontrib>Wei, Xiang</creatorcontrib><creatorcontrib>Liu, Ming</creatorcontrib><creatorcontrib>Zhang, Huabing</creatorcontrib><title>A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation</title><title>Clinical & translational oncology</title><addtitle>Clin Transl Oncol</addtitle><addtitle>Clin Transl Oncol</addtitle><description>Background
The cancer-associated biological mechanisms and the implementation of immunotherapy are heavily impacted by the activities of T cells, consequently influencing the effectiveness of therapeutic interventions. Nevertheless, the mechanistic actions of T-cell proliferation in response to immunotherapy and the overall prognosis of individuals diagnosed with hepatocellular carcinoma (HCC) remains insufficiently understood. The present work seeks to present a comprehensive analysis immune landscape in the context of HCC.
Methods
To achieve this objective, both clinical data and RNA sequencing data were acquired from authoritative databases such as The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO).
Results
Through the utilization of consensus clustering techniques, distinct molecular subtypes associated with T-cell proliferation were delineated. Following this, seven genes of prognostic significance were identified via a combination of Cox and Lasso regression analyses. By integrating these genes into a prognostic signature, the predictive capability of the model was verified through an examination of internal and external datasets. Moreover, immunohistochemistry and qRT-PCR tests have verified the reliability of prognostic markers. Notably, the high-risk group exhibited elevated expression of immune checkpoint genes as well as higher benefit in terms of drug sensitivity testing, as determined by the Chi-square test (
P
< 0.001). The risk score derived from the prognostic signature depicted considerable efficacy in predicting the survival outcomes of HCC cases.
Conclusions
Overall, prognostic markers may become valuable predictive tool for individuals diagnosed with HCC, allowing for the prediction of their prognosis as well as the assessment of their immunological condition and response to immunotherapy.</description><subject>Biomarkers, Tumor - genetics</subject><subject>Carcinoma, Hepatocellular - genetics</subject><subject>Carcinoma, Hepatocellular - immunology</subject><subject>Carcinoma, Hepatocellular - mortality</subject><subject>Carcinoma, Hepatocellular - pathology</subject><subject>Carcinoma, Hepatocellular - therapy</subject><subject>Cell Proliferation</subject><subject>Female</subject><subject>Humans</subject><subject>Immunotherapy - methods</subject><subject>Liver Neoplasms - genetics</subject><subject>Liver Neoplasms - immunology</subject><subject>Liver Neoplasms - mortality</subject><subject>Liver Neoplasms - pathology</subject><subject>Liver Neoplasms - therapy</subject><subject>Male</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Middle Aged</subject><subject>Oncology</subject><subject>Prognosis</subject><subject>Research Article</subject><subject>T-Lymphocytes - immunology</subject><issn>1699-3055</issn><issn>1699-048X</issn><issn>1699-3055</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>EIF</sourceid><recordid>eNp9kctu1TAQhi0EoqXwAiyQl2wCviU-ZoOqiptUiU1ZW7bj5LhKPMF2IvWdeEgcTqnKhpVHM_98M-MfodeUvKOEyPeZMqJEQxhvCOcdb-QTdE47pRpO2vbpo_gMvcj5ltSoo_Q5OuMHyvhBinP06xJH2PyElwRjhFyCwzP0NTFAqknfB1dCHPFiSvCx4LymLWxmwib2OMzzGqEcfTLLHU4-LxBz2Hz0OeMQ8dHXNnB-mtbJJOxMciHCbD7UYg7jseyqArgSarDBtPl5HwIDvmn2tn2tKQyVXwLEl-jZYKbsX92_F-jH5083V1-b6-9fvl1dXjeOq0NppCWyp4OQg1WWKsEF71rSGsftYIVRPTOi9bz31hmiBtoaZaXoO0YEY9Q6foE-nrjLamffu7pSMpNeUphNutNggv63EsNRj7BpSik5KC4r4e09IcHP1eei55D3g0z0sGbNFBGtbFnXVik7SV2CnJMfHuZQonef9clnXX3Wf3zWO__N4w0fWv4aWwX8JMi1FEef9C2sKdZf-x_2N-KnusQ</recordid><startdate>20240601</startdate><enddate>20240601</enddate><creator>Tang, Shengjie</creator><creator>Sun, Rui</creator><creator>Tang, Kechao</creator><creator>Wei, Xiang</creator><creator>Liu, Ming</creator><creator>Zhang, Huabing</creator><general>Springer International Publishing</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-8402-7830</orcidid></search><sort><creationdate>20240601</creationdate><title>A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation</title><author>Tang, Shengjie ; Sun, Rui ; Tang, Kechao ; Wei, Xiang ; Liu, Ming ; Zhang, Huabing</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c398t-7b07d1f47fb9b1943436505ac3bfb4a9d2a45e3debca09f15a9b74d6204221bc3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Biomarkers, Tumor - genetics</topic><topic>Carcinoma, Hepatocellular - genetics</topic><topic>Carcinoma, Hepatocellular - immunology</topic><topic>Carcinoma, Hepatocellular - mortality</topic><topic>Carcinoma, Hepatocellular - pathology</topic><topic>Carcinoma, Hepatocellular - therapy</topic><topic>Cell Proliferation</topic><topic>Female</topic><topic>Humans</topic><topic>Immunotherapy - methods</topic><topic>Liver Neoplasms - genetics</topic><topic>Liver Neoplasms - immunology</topic><topic>Liver Neoplasms - mortality</topic><topic>Liver Neoplasms - pathology</topic><topic>Liver Neoplasms - therapy</topic><topic>Male</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Middle Aged</topic><topic>Oncology</topic><topic>Prognosis</topic><topic>Research Article</topic><topic>T-Lymphocytes - immunology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tang, Shengjie</creatorcontrib><creatorcontrib>Sun, Rui</creatorcontrib><creatorcontrib>Tang, Kechao</creatorcontrib><creatorcontrib>Wei, Xiang</creatorcontrib><creatorcontrib>Liu, Ming</creatorcontrib><creatorcontrib>Zhang, Huabing</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Clinical & translational oncology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tang, Shengjie</au><au>Sun, Rui</au><au>Tang, Kechao</au><au>Wei, Xiang</au><au>Liu, Ming</au><au>Zhang, Huabing</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation</atitle><jtitle>Clinical & translational oncology</jtitle><stitle>Clin Transl Oncol</stitle><addtitle>Clin Transl Oncol</addtitle><date>2024-06-01</date><risdate>2024</risdate><volume>26</volume><issue>6</issue><spage>1368</spage><epage>1383</epage><pages>1368-1383</pages><issn>1699-3055</issn><issn>1699-048X</issn><eissn>1699-3055</eissn><abstract>Background
The cancer-associated biological mechanisms and the implementation of immunotherapy are heavily impacted by the activities of T cells, consequently influencing the effectiveness of therapeutic interventions. Nevertheless, the mechanistic actions of T-cell proliferation in response to immunotherapy and the overall prognosis of individuals diagnosed with hepatocellular carcinoma (HCC) remains insufficiently understood. The present work seeks to present a comprehensive analysis immune landscape in the context of HCC.
Methods
To achieve this objective, both clinical data and RNA sequencing data were acquired from authoritative databases such as The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO).
Results
Through the utilization of consensus clustering techniques, distinct molecular subtypes associated with T-cell proliferation were delineated. Following this, seven genes of prognostic significance were identified via a combination of Cox and Lasso regression analyses. By integrating these genes into a prognostic signature, the predictive capability of the model was verified through an examination of internal and external datasets. Moreover, immunohistochemistry and qRT-PCR tests have verified the reliability of prognostic markers. Notably, the high-risk group exhibited elevated expression of immune checkpoint genes as well as higher benefit in terms of drug sensitivity testing, as determined by the Chi-square test (
P
< 0.001). The risk score derived from the prognostic signature depicted considerable efficacy in predicting the survival outcomes of HCC cases.
Conclusions
Overall, prognostic markers may become valuable predictive tool for individuals diagnosed with HCC, allowing for the prediction of their prognosis as well as the assessment of their immunological condition and response to immunotherapy.</abstract><cop>Cham</cop><pub>Springer International Publishing</pub><pmid>38123874</pmid><doi>10.1007/s12094-023-03363-7</doi><tpages>16</tpages><orcidid>https://orcid.org/0000-0001-8402-7830</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Biomarkers, Tumor - genetics Carcinoma, Hepatocellular - genetics Carcinoma, Hepatocellular - immunology Carcinoma, Hepatocellular - mortality Carcinoma, Hepatocellular - pathology Carcinoma, Hepatocellular - therapy Cell Proliferation Female Humans Immunotherapy - methods Liver Neoplasms - genetics Liver Neoplasms - immunology Liver Neoplasms - mortality Liver Neoplasms - pathology Liver Neoplasms - therapy Male Medicine Medicine & Public Health Middle Aged Oncology Prognosis Research Article T-Lymphocytes - immunology |
title | A novel prognostic model for predicting patient survival and immunotherapy responsiveness in hepatocellular carcinoma: insights into the involvement of T-cell proliferation |
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