Catalysis driven by an amyloid-substrate complex
Amine modification through nucleophilic attack of the amine functionality is a very common chemical transformation. Under biorelevant conditions using acidic-to-neutral pH buffer, however, the nucleophilic reaction of alkyl amines (pKa ≈ 10) is not facile due to the generation of ammonium ions lacki...
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creator | Sawazaki, Taka Sasaki, Daisuke Sohma, Youhei |
description | Amine modification through nucleophilic attack of the amine functionality is a very common chemical transformation. Under biorelevant conditions using acidic-to-neutral pH buffer, however, the nucleophilic reaction of alkyl amines (pKa ≈ 10) is not facile due to the generation of ammonium ions lacking nucleophilicity. Here, we disclose a unique molecular transformation system,
atalysis driven by
myloid-
ubstrate comp
ex (CASL), that promotes amine modifications in acidic buffer. Ammonium ions attached to molecules with amyloid-binding capability were activated through deprotonation due to the close proximity to the amyloid catalyst formed by Ac-Asn-Phe-Gly-Ala-Ile-Leu-NH
(
), derived from islet amyloid polypeptide (IAPP). Under the CASL conditions, alkyl amines underwent various modifications, i.e., acylation, arylation, cyclization, and alkylation, in acidic buffer. Crystallographic analysis and chemical modification studies of the amyloid catalysts suggested that the carbonyl oxygen of the Phe-Gly amide bond of
plays a key role in activating the substrate amine by forming a hydrogen bond. Using CASL, selective conversion of substrates possessing equivalently reactive amine functionalities was achieved in catalytic reactions using amyloids. CASL provides a unique method for applying nucleophilic conversion reactions of amines in diverse fields of chemistry and biology. |
doi_str_mv | 10.1073/pnas.2314704121 |
format | Article |
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atalysis driven by
myloid-
ubstrate comp
ex (CASL), that promotes amine modifications in acidic buffer. Ammonium ions attached to molecules with amyloid-binding capability were activated through deprotonation due to the close proximity to the amyloid catalyst formed by Ac-Asn-Phe-Gly-Ala-Ile-Leu-NH
(
), derived from islet amyloid polypeptide (IAPP). Under the CASL conditions, alkyl amines underwent various modifications, i.e., acylation, arylation, cyclization, and alkylation, in acidic buffer. Crystallographic analysis and chemical modification studies of the amyloid catalysts suggested that the carbonyl oxygen of the Phe-Gly amide bond of
plays a key role in activating the substrate amine by forming a hydrogen bond. Using CASL, selective conversion of substrates possessing equivalently reactive amine functionalities was achieved in catalytic reactions using amyloids. CASL provides a unique method for applying nucleophilic conversion reactions of amines in diverse fields of chemistry and biology.</description><identifier>ISSN: 0027-8424</identifier><identifier>ISSN: 1091-6490</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.2314704121</identifier><identifier>PMID: 38691589</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>Acylation ; Alkylation ; Amines ; Amines - chemistry ; Amines - metabolism ; Ammonium ; Amylin ; Amyloid - chemistry ; Amyloid - metabolism ; Buffers (chemistry) ; Carbonyl compounds ; Carbonyls ; Catalysis ; Catalysts ; Chemical modification ; Crystallography ; Humans ; Hydrogen Bonding ; Hydrogen bonds ; Hydrogen-Ion Concentration ; Ions ; Islet Amyloid Polypeptide - chemistry ; Islet Amyloid Polypeptide - metabolism ; Physical Sciences ; Polypeptides ; Substrates</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2024-05, Vol.121 (19), p.e2314704121</ispartof><rights>Copyright National Academy of Sciences May 7, 2024</rights><rights>Copyright © 2024 the Author(s). Published by PNAS. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c376t-3f4af558319716f2e7cad9719ae8496c8a3c324434626c436145778c7477d35d3</cites><orcidid>0000-0002-2224-1900 ; 0000-0002-1154-3903 ; 0000-0001-5650-998X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11087796/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC11087796/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38691589$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sawazaki, Taka</creatorcontrib><creatorcontrib>Sasaki, Daisuke</creatorcontrib><creatorcontrib>Sohma, Youhei</creatorcontrib><title>Catalysis driven by an amyloid-substrate complex</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Amine modification through nucleophilic attack of the amine functionality is a very common chemical transformation. Under biorelevant conditions using acidic-to-neutral pH buffer, however, the nucleophilic reaction of alkyl amines (pKa ≈ 10) is not facile due to the generation of ammonium ions lacking nucleophilicity. Here, we disclose a unique molecular transformation system,
atalysis driven by
myloid-
ubstrate comp
ex (CASL), that promotes amine modifications in acidic buffer. Ammonium ions attached to molecules with amyloid-binding capability were activated through deprotonation due to the close proximity to the amyloid catalyst formed by Ac-Asn-Phe-Gly-Ala-Ile-Leu-NH
(
), derived from islet amyloid polypeptide (IAPP). Under the CASL conditions, alkyl amines underwent various modifications, i.e., acylation, arylation, cyclization, and alkylation, in acidic buffer. Crystallographic analysis and chemical modification studies of the amyloid catalysts suggested that the carbonyl oxygen of the Phe-Gly amide bond of
plays a key role in activating the substrate amine by forming a hydrogen bond. Using CASL, selective conversion of substrates possessing equivalently reactive amine functionalities was achieved in catalytic reactions using amyloids. CASL provides a unique method for applying nucleophilic conversion reactions of amines in diverse fields of chemistry and biology.</description><subject>Acylation</subject><subject>Alkylation</subject><subject>Amines</subject><subject>Amines - chemistry</subject><subject>Amines - metabolism</subject><subject>Ammonium</subject><subject>Amylin</subject><subject>Amyloid - chemistry</subject><subject>Amyloid - metabolism</subject><subject>Buffers (chemistry)</subject><subject>Carbonyl compounds</subject><subject>Carbonyls</subject><subject>Catalysis</subject><subject>Catalysts</subject><subject>Chemical modification</subject><subject>Crystallography</subject><subject>Humans</subject><subject>Hydrogen Bonding</subject><subject>Hydrogen bonds</subject><subject>Hydrogen-Ion Concentration</subject><subject>Ions</subject><subject>Islet Amyloid Polypeptide - chemistry</subject><subject>Islet Amyloid Polypeptide - metabolism</subject><subject>Physical Sciences</subject><subject>Polypeptides</subject><subject>Substrates</subject><issn>0027-8424</issn><issn>1091-6490</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkctLw0AQxhdRbK2evUnAi5fY2Uf2cRIpvqDgRc_LdrPRlLzcTYr5701orY_TDMxvPuabD6FzDNcYBJ03lQnXhGImgGGCD9AUg8IxZwoO0RSAiFgywiboJIQ1AKhEwjGaUMkVTqSaIliY1hR9yEOU-nzjqmjVR6aKTNkXdZ7GoVuF1pvWRbYum8J9nqKjzBTBne3qDL3e370sHuPl88PT4nYZWyp4G9OMmSxJJMVKYJ4RJ6xJh1YZJ5niVhpqKWGMMk64ZZRjlgghrWBCpDRJ6QzdbHWbblW61LpqOKPQjc9L43tdm1z_nVT5u36rNxpjkEIoPihc7RR8_dG50OoyD9YVhalc3QVNIQEsuFAwoJf_0HXd-WrwN1KUDJbwKDjfUtbXIXiX7a_BoMc49BiH_olj2Lj4bWLPf_-ffgG4mITN</recordid><startdate>20240507</startdate><enddate>20240507</enddate><creator>Sawazaki, Taka</creator><creator>Sasaki, Daisuke</creator><creator>Sohma, Youhei</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-2224-1900</orcidid><orcidid>https://orcid.org/0000-0002-1154-3903</orcidid><orcidid>https://orcid.org/0000-0001-5650-998X</orcidid></search><sort><creationdate>20240507</creationdate><title>Catalysis driven by an amyloid-substrate complex</title><author>Sawazaki, Taka ; Sasaki, Daisuke ; Sohma, Youhei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c376t-3f4af558319716f2e7cad9719ae8496c8a3c324434626c436145778c7477d35d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Acylation</topic><topic>Alkylation</topic><topic>Amines</topic><topic>Amines - chemistry</topic><topic>Amines - metabolism</topic><topic>Ammonium</topic><topic>Amylin</topic><topic>Amyloid - chemistry</topic><topic>Amyloid - metabolism</topic><topic>Buffers (chemistry)</topic><topic>Carbonyl compounds</topic><topic>Carbonyls</topic><topic>Catalysis</topic><topic>Catalysts</topic><topic>Chemical modification</topic><topic>Crystallography</topic><topic>Humans</topic><topic>Hydrogen Bonding</topic><topic>Hydrogen bonds</topic><topic>Hydrogen-Ion Concentration</topic><topic>Ions</topic><topic>Islet Amyloid Polypeptide - chemistry</topic><topic>Islet Amyloid Polypeptide - metabolism</topic><topic>Physical Sciences</topic><topic>Polypeptides</topic><topic>Substrates</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sawazaki, Taka</creatorcontrib><creatorcontrib>Sasaki, Daisuke</creatorcontrib><creatorcontrib>Sohma, Youhei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Ecology Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Immunology Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sawazaki, Taka</au><au>Sasaki, Daisuke</au><au>Sohma, Youhei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Catalysis driven by an amyloid-substrate complex</atitle><jtitle>Proceedings of the National Academy of Sciences - PNAS</jtitle><addtitle>Proc Natl Acad Sci U S A</addtitle><date>2024-05-07</date><risdate>2024</risdate><volume>121</volume><issue>19</issue><spage>e2314704121</spage><pages>e2314704121-</pages><issn>0027-8424</issn><issn>1091-6490</issn><eissn>1091-6490</eissn><abstract>Amine modification through nucleophilic attack of the amine functionality is a very common chemical transformation. Under biorelevant conditions using acidic-to-neutral pH buffer, however, the nucleophilic reaction of alkyl amines (pKa ≈ 10) is not facile due to the generation of ammonium ions lacking nucleophilicity. Here, we disclose a unique molecular transformation system,
atalysis driven by
myloid-
ubstrate comp
ex (CASL), that promotes amine modifications in acidic buffer. Ammonium ions attached to molecules with amyloid-binding capability were activated through deprotonation due to the close proximity to the amyloid catalyst formed by Ac-Asn-Phe-Gly-Ala-Ile-Leu-NH
(
), derived from islet amyloid polypeptide (IAPP). Under the CASL conditions, alkyl amines underwent various modifications, i.e., acylation, arylation, cyclization, and alkylation, in acidic buffer. Crystallographic analysis and chemical modification studies of the amyloid catalysts suggested that the carbonyl oxygen of the Phe-Gly amide bond of
plays a key role in activating the substrate amine by forming a hydrogen bond. Using CASL, selective conversion of substrates possessing equivalently reactive amine functionalities was achieved in catalytic reactions using amyloids. CASL provides a unique method for applying nucleophilic conversion reactions of amines in diverse fields of chemistry and biology.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>38691589</pmid><doi>10.1073/pnas.2314704121</doi><orcidid>https://orcid.org/0000-0002-2224-1900</orcidid><orcidid>https://orcid.org/0000-0002-1154-3903</orcidid><orcidid>https://orcid.org/0000-0001-5650-998X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Acylation Alkylation Amines Amines - chemistry Amines - metabolism Ammonium Amylin Amyloid - chemistry Amyloid - metabolism Buffers (chemistry) Carbonyl compounds Carbonyls Catalysis Catalysts Chemical modification Crystallography Humans Hydrogen Bonding Hydrogen bonds Hydrogen-Ion Concentration Ions Islet Amyloid Polypeptide - chemistry Islet Amyloid Polypeptide - metabolism Physical Sciences Polypeptides Substrates |
title | Catalysis driven by an amyloid-substrate complex |
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