A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia)
The Yellow Warbler (Setophaga petechia) is a small songbird in the New World Warbler family (Parulidae) that exhibits phenotypic and ecological differences across a widespread distribution and is important to California's riparian habitat conservation. Here, we present a high-quality de novo ge...
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| Veröffentlicht in: | The Journal of heredity 2024-05, Vol.115 (3), p.317-325 |
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| container_title | The Journal of heredity |
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| creator | Tsai, Whitney L E Escalona, Merly Garrett, Kimball L Terrill, Ryan S Sahasrabudhe, Ruta Nguyen, Oanh Beraut, Eric Seligmann, William Fairbairn, Colin W Harrigan, Ryan J McCormack, John E Alfaro, Michael E Smith, Thomas B Bay, Rachael A |
| description | The Yellow Warbler (Setophaga petechia) is a small songbird in the New World Warbler family (Parulidae) that exhibits phenotypic and ecological differences across a widespread distribution and is important to California's riparian habitat conservation. Here, we present a high-quality de novo genome assembly of a vouchered female Yellow Warbler from southern California. Using HiFi long-read and Omni-C proximity sequencing technologies, we generated a 1.22 Gb assembly including 687 scaffolds with a contig N50 of 6.80 Mb, scaffold N50 of 21.18 Mb, and a BUSCO completeness score of 96.0%. This highly contiguous genome assembly provides an essential resource for understanding the history of gene flow, divergence, and local adaptation and can inform conservation management of this charismatic bird species. |
| doi_str_mv | 10.1093/jhered/esae008 |
| format | Article |
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| subjects | Genome Resources |
| title | A highly contiguous genome assembly for the Yellow Warbler (Setophaga petechia) |
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