DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8
Epigenetic regulation plays a crucial role in the pathogenesis of autoimmune diseases such as inflammatory arthritis. DNA hypomethylating agents, such as decitabine (DAC), have been shown to dampen inflammation and restore immune homeostasis. In the present study, we demonstrate that DAC elicits pot...
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description | Epigenetic regulation plays a crucial role in the pathogenesis of autoimmune diseases such as inflammatory arthritis. DNA hypomethylating agents, such as decitabine (DAC), have been shown to dampen inflammation and restore immune homeostasis. In the present study, we demonstrate that DAC elicits potent anti-inflammatory effects and attenuates disease symptoms in several animal models of arthritis. Transcriptomic and epigenomic profiling show that DAC-mediated hypomethylation regulates a wide range of cell types in arthritis, altering the differentiation trajectories of anti-inflammatory macrophage populations, regulatory T cells, and tissue-protective synovial fibroblasts (SFs). Mechanistically, DAC-mediated demethylation of intragenic 5'-Cytosine phosphate Guanine-3' (CpG) islands of the transcription factor Irf8 (interferon regulatory factor 8) induced its re-expression and promoted its repressor activity. As a result, DAC restored joint homeostasis by resetting the transcriptomic signature of negative regulators of inflammation in synovial macrophages (MerTK, Trem2, and Cx3cr1), T
(Foxp3), and SFs (Pdpn and Fapα). In conclusion, we found that Irf8 is necessary for the inhibitory effect of DAC in murine arthritis and that direct expression of Irf8 is sufficient to significantly mitigate arthritis. |
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(Foxp3), and SFs (Pdpn and Fapα). In conclusion, we found that Irf8 is necessary for the inhibitory effect of DAC in murine arthritis and that direct expression of Irf8 is sufficient to significantly mitigate arthritis.</description><identifier>ISSN: 0027-8424</identifier><identifier>ISSN: 1091-6490</identifier><identifier>EISSN: 1091-6490</identifier><identifier>DOI: 10.1073/pnas.2310264121</identifier><identifier>PMID: 38319963</identifier><language>eng</language><publisher>United States: National Academy of Sciences</publisher><subject>5-aza-2'-deoxycytidine ; Animal diseases ; Animal models ; Animals ; Anti-Inflammatory Agents ; Arthritis ; Arthritis - genetics ; Autoimmune diseases ; Azacitidine - pharmacology ; Biological Sciences ; Cell differentiation ; CpG islands ; CX3CR1 protein ; Cytosine ; Decitabine - pharmacology ; Demethylation ; Deoxyribonucleic acid ; DNA ; DNA Methylation ; Epigenesis, Genetic ; Epigenetics ; Foxp3 protein ; Homeostasis ; Immunoregulation ; Inflammation - genetics ; Interferon ; Interferon regulatory factor ; Interferon Regulatory Factors - metabolism ; Lymphocytes ; Lymphocytes T ; Macrophages ; Membrane Glycoproteins - metabolism ; Mice ; Pathogenesis ; Receptors, Immunologic - genetics ; Signs and symptoms ; Transcriptomics</subject><ispartof>Proceedings of the National Academy of Sciences - PNAS, 2024-02, Vol.121 (7), p.e2310264121</ispartof><rights>Copyright National Academy of Sciences Feb 13, 2024</rights><rights>Copyright © 2024 the Author(s). Published by PNAS. 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c381t-6631ff81360043ca5a2faab76ce1f93da5ab3d0b5a87136c556221c0db65c5d53</citedby><cites>FETCH-LOGICAL-c381t-6631ff81360043ca5a2faab76ce1f93da5ab3d0b5a87136c556221c0db65c5d53</cites><orcidid>0000-0001-6052-4971 ; 0000-0002-5890-5086 ; 0000-0002-0618-6649 ; 0000-0001-5266-6734 ; 0000-0001-9598-7036 ; 0000-0003-4660-0952</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10873594/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10873594/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38319963$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Swarnkar, Gaurav</creatorcontrib><creatorcontrib>Semenkovich, Nicholas P</creatorcontrib><creatorcontrib>Arra, Manoj</creatorcontrib><creatorcontrib>Mims, Dorothy K</creatorcontrib><creatorcontrib>Naqvi, Syeda Kanwal</creatorcontrib><creatorcontrib>Peterson, Timothy</creatorcontrib><creatorcontrib>Mbalaviele, Gabriel</creatorcontrib><creatorcontrib>Wu, Chia-Lung</creatorcontrib><creatorcontrib>Abu-Amer, Yousef</creatorcontrib><title>DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8</title><title>Proceedings of the National Academy of Sciences - PNAS</title><addtitle>Proc Natl Acad Sci U S A</addtitle><description>Epigenetic regulation plays a crucial role in the pathogenesis of autoimmune diseases such as inflammatory arthritis. DNA hypomethylating agents, such as decitabine (DAC), have been shown to dampen inflammation and restore immune homeostasis. In the present study, we demonstrate that DAC elicits potent anti-inflammatory effects and attenuates disease symptoms in several animal models of arthritis. Transcriptomic and epigenomic profiling show that DAC-mediated hypomethylation regulates a wide range of cell types in arthritis, altering the differentiation trajectories of anti-inflammatory macrophage populations, regulatory T cells, and tissue-protective synovial fibroblasts (SFs). Mechanistically, DAC-mediated demethylation of intragenic 5'-Cytosine phosphate Guanine-3' (CpG) islands of the transcription factor Irf8 (interferon regulatory factor 8) induced its re-expression and promoted its repressor activity. As a result, DAC restored joint homeostasis by resetting the transcriptomic signature of negative regulators of inflammation in synovial macrophages (MerTK, Trem2, and Cx3cr1), T
(Foxp3), and SFs (Pdpn and Fapα). In conclusion, we found that Irf8 is necessary for the inhibitory effect of DAC in murine arthritis and that direct expression of Irf8 is sufficient to significantly mitigate arthritis.</description><subject>5-aza-2'-deoxycytidine</subject><subject>Animal diseases</subject><subject>Animal models</subject><subject>Animals</subject><subject>Anti-Inflammatory Agents</subject><subject>Arthritis</subject><subject>Arthritis - genetics</subject><subject>Autoimmune diseases</subject><subject>Azacitidine - pharmacology</subject><subject>Biological Sciences</subject><subject>Cell differentiation</subject><subject>CpG islands</subject><subject>CX3CR1 protein</subject><subject>Cytosine</subject><subject>Decitabine - pharmacology</subject><subject>Demethylation</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>DNA Methylation</subject><subject>Epigenesis, Genetic</subject><subject>Epigenetics</subject><subject>Foxp3 protein</subject><subject>Homeostasis</subject><subject>Immunoregulation</subject><subject>Inflammation - genetics</subject><subject>Interferon</subject><subject>Interferon regulatory factor</subject><subject>Interferon Regulatory Factors - metabolism</subject><subject>Lymphocytes</subject><subject>Lymphocytes T</subject><subject>Macrophages</subject><subject>Membrane Glycoproteins - metabolism</subject><subject>Mice</subject><subject>Pathogenesis</subject><subject>Receptors, Immunologic - genetics</subject><subject>Signs and symptoms</subject><subject>Transcriptomics</subject><issn>0027-8424</issn><issn>1091-6490</issn><issn>1091-6490</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkctr3DAQxkVpabbbnnMrhl5ycaKHJVunEDZ9QWgv7VmMZWlXiS1tJDng_74ySdPHaWDm933MzIfQKcHnBLfs4ughnVNGMBUNoeQF2hAsSS0aiV-iDca0rbuGNifoTUq3GGPJO_wanbCOESkF26C7629X1WE5hsnkwzJCdsFXMJnRhQjZpMrEkNyDqZy3I0wT5BCXCmI-RJddqvqlmsIwr0K_L1A20RaJr6LZr92VtqBLrbu36JWFMZl3T3WLfn76-GP3pb75_vnr7uqm1qwjuRaCEWs7wgTGDdPAgVqAvhXaECvZUBo9G3DPoWsLpDkXlBKNh15wzQfOtujy0fc495MZtPE5wqiO0U0QFxXAqX8n3h3UPjwogruWcdkUh7MnhxjuZ5OymlzSZhzBmzAnRSVljDZEkoJ--A-9DXP05b6Vann5fmG36OKR0uWdKRr7vA3Bak1SrUmqP0kWxfu_j3jmf0fHfgGMqp07</recordid><startdate>20240213</startdate><enddate>20240213</enddate><creator>Swarnkar, Gaurav</creator><creator>Semenkovich, Nicholas P</creator><creator>Arra, Manoj</creator><creator>Mims, Dorothy K</creator><creator>Naqvi, Syeda Kanwal</creator><creator>Peterson, Timothy</creator><creator>Mbalaviele, Gabriel</creator><creator>Wu, Chia-Lung</creator><creator>Abu-Amer, Yousef</creator><general>National Academy of Sciences</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7QL</scope><scope>7QP</scope><scope>7QR</scope><scope>7SN</scope><scope>7SS</scope><scope>7T5</scope><scope>7TK</scope><scope>7TM</scope><scope>7TO</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-6052-4971</orcidid><orcidid>https://orcid.org/0000-0002-5890-5086</orcidid><orcidid>https://orcid.org/0000-0002-0618-6649</orcidid><orcidid>https://orcid.org/0000-0001-5266-6734</orcidid><orcidid>https://orcid.org/0000-0001-9598-7036</orcidid><orcidid>https://orcid.org/0000-0003-4660-0952</orcidid></search><sort><creationdate>20240213</creationdate><title>DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8</title><author>Swarnkar, Gaurav ; 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DNA hypomethylating agents, such as decitabine (DAC), have been shown to dampen inflammation and restore immune homeostasis. In the present study, we demonstrate that DAC elicits potent anti-inflammatory effects and attenuates disease symptoms in several animal models of arthritis. Transcriptomic and epigenomic profiling show that DAC-mediated hypomethylation regulates a wide range of cell types in arthritis, altering the differentiation trajectories of anti-inflammatory macrophage populations, regulatory T cells, and tissue-protective synovial fibroblasts (SFs). Mechanistically, DAC-mediated demethylation of intragenic 5'-Cytosine phosphate Guanine-3' (CpG) islands of the transcription factor Irf8 (interferon regulatory factor 8) induced its re-expression and promoted its repressor activity. As a result, DAC restored joint homeostasis by resetting the transcriptomic signature of negative regulators of inflammation in synovial macrophages (MerTK, Trem2, and Cx3cr1), T
(Foxp3), and SFs (Pdpn and Fapα). In conclusion, we found that Irf8 is necessary for the inhibitory effect of DAC in murine arthritis and that direct expression of Irf8 is sufficient to significantly mitigate arthritis.</abstract><cop>United States</cop><pub>National Academy of Sciences</pub><pmid>38319963</pmid><doi>10.1073/pnas.2310264121</doi><orcidid>https://orcid.org/0000-0001-6052-4971</orcidid><orcidid>https://orcid.org/0000-0002-5890-5086</orcidid><orcidid>https://orcid.org/0000-0002-0618-6649</orcidid><orcidid>https://orcid.org/0000-0001-5266-6734</orcidid><orcidid>https://orcid.org/0000-0001-9598-7036</orcidid><orcidid>https://orcid.org/0000-0003-4660-0952</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 5-aza-2'-deoxycytidine Animal diseases Animal models Animals Anti-Inflammatory Agents Arthritis Arthritis - genetics Autoimmune diseases Azacitidine - pharmacology Biological Sciences Cell differentiation CpG islands CX3CR1 protein Cytosine Decitabine - pharmacology Demethylation Deoxyribonucleic acid DNA DNA Methylation Epigenesis, Genetic Epigenetics Foxp3 protein Homeostasis Immunoregulation Inflammation - genetics Interferon Interferon regulatory factor Interferon Regulatory Factors - metabolism Lymphocytes Lymphocytes T Macrophages Membrane Glycoproteins - metabolism Mice Pathogenesis Receptors, Immunologic - genetics Signs and symptoms Transcriptomics |
title | DNA hypomethylation ameliorates erosive inflammatory arthritis by modulating interferon regulatory factor-8 |
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