Genomic and clinical characteristics of campylobacteriosis in Australia
spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis...
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creator | Cribb, Danielle M Moffatt, Cameron R M Wallace, Rhiannon L McLure, Angus T Bulach, Dieter Jennison, Amy V French, Nigel Valcanis, Mary Glass, Kathryn Kirk, Martyn D |
description | spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis cases from three Australian states and territories (2018-2019). We collected demographic, health status, risk factors, and self-reported disease data. We whole genome sequenced 422
.
and 84
.
case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65
.
and 21
.
sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as
(
) and
were prevalent (>90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g.
,
, and
) appeared to distinguish human
cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human
cases from food source isolates. Host factors like age and comorbidities have a greater influence on health outcomes than virulence factors. |
doi_str_mv | 10.1099/mgen.0.001174 |
format | Article |
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.
and 84
.
case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65
.
and 21
.
sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as
(
) and
were prevalent (>90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g.
,
, and
) appeared to distinguish human
cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human
cases from food source isolates. Host factors like age and comorbidities have a greater influence on health outcomes than virulence factors.</description><identifier>ISSN: 2057-5858</identifier><identifier>EISSN: 2057-5858</identifier><identifier>DOI: 10.1099/mgen.0.001174</identifier><identifier>PMID: 38214338</identifier><language>eng</language><publisher>England: Microbiology Society</publisher><subject>Australia - epidemiology ; Campylobacter coli - genetics ; Campylobacter Infections - epidemiology ; Campylobacter Infections - microbiology ; Campylobacter jejuni ; Gastroenteritis ; Genomics ; Humans ; Virulence Factors - genetics</subject><ispartof>Microbial genomics, 2024-01, Vol.10 (1)</ispartof><rights>2024 The Authors 2024</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c344t-46a63b39c299a54adb8c207b110a9cce8a2fac92ee6d99969a4176ae0e5e62073</cites><orcidid>0000-0002-7200-1227</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10868609/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10868609/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38214338$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Cribb, Danielle M</creatorcontrib><creatorcontrib>Moffatt, Cameron R M</creatorcontrib><creatorcontrib>Wallace, Rhiannon L</creatorcontrib><creatorcontrib>McLure, Angus T</creatorcontrib><creatorcontrib>Bulach, Dieter</creatorcontrib><creatorcontrib>Jennison, Amy V</creatorcontrib><creatorcontrib>French, Nigel</creatorcontrib><creatorcontrib>Valcanis, Mary</creatorcontrib><creatorcontrib>Glass, Kathryn</creatorcontrib><creatorcontrib>Kirk, Martyn D</creatorcontrib><title>Genomic and clinical characteristics of campylobacteriosis in Australia</title><title>Microbial genomics</title><addtitle>Microb Genom</addtitle><description>spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis cases from three Australian states and territories (2018-2019). We collected demographic, health status, risk factors, and self-reported disease data. We whole genome sequenced 422
.
and 84
.
case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65
.
and 21
.
sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as
(
) and
were prevalent (>90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g.
,
, and
) appeared to distinguish human
cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human
cases from food source isolates. Host factors like age and comorbidities have a greater influence on health outcomes than virulence factors.</description><subject>Australia - epidemiology</subject><subject>Campylobacter coli - genetics</subject><subject>Campylobacter Infections - epidemiology</subject><subject>Campylobacter Infections - microbiology</subject><subject>Campylobacter jejuni</subject><subject>Gastroenteritis</subject><subject>Genomics</subject><subject>Humans</subject><subject>Virulence Factors - genetics</subject><issn>2057-5858</issn><issn>2057-5858</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpVkc1Lw0AQxRdRbKk9epUcvaTuVza7JylFq1Dwoudlstm0K8luzSZC_3tTUqWeZpj58d4wD6FbghcEK_XQbK1f4AXGhOT8Ak0pzvI0k5m8POsnaB7jJx6gTAqVZ9dowiQlnDE5Reu19aFxJgFfJqZ23hmoE7ODFkxnWxc7Z2ISqsRAsz_UoRjHIbqYOJ8s-9i1UDu4QVcV1NHOT3WGPp6f3lcv6eZt_bpablLDOO9SLkCwgilDlYKMQ1lIQ3FeEIJBGWMl0AqMotaKUiklFHCSC7DYZlYMIJuhx1F33xeNLY31R3-9b10D7UEHcPr_xrud3oZvTbAUUmA1KNyfFNrw1dvY6cZFY-savA191FQRTjPGlRjQdERNG2JsbfXnQ7A-BqCPAWisxwAG_u78uD_6993sB9wcg0M</recordid><startdate>20240101</startdate><enddate>20240101</enddate><creator>Cribb, Danielle M</creator><creator>Moffatt, Cameron R M</creator><creator>Wallace, Rhiannon L</creator><creator>McLure, Angus T</creator><creator>Bulach, Dieter</creator><creator>Jennison, Amy V</creator><creator>French, Nigel</creator><creator>Valcanis, Mary</creator><creator>Glass, Kathryn</creator><creator>Kirk, Martyn D</creator><general>Microbiology Society</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-7200-1227</orcidid></search><sort><creationdate>20240101</creationdate><title>Genomic and clinical characteristics of campylobacteriosis in Australia</title><author>Cribb, Danielle M ; Moffatt, Cameron R M ; Wallace, Rhiannon L ; McLure, Angus T ; Bulach, Dieter ; Jennison, Amy V ; French, Nigel ; Valcanis, Mary ; Glass, Kathryn ; Kirk, Martyn D</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c344t-46a63b39c299a54adb8c207b110a9cce8a2fac92ee6d99969a4176ae0e5e62073</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Australia - epidemiology</topic><topic>Campylobacter coli - genetics</topic><topic>Campylobacter Infections - epidemiology</topic><topic>Campylobacter Infections - microbiology</topic><topic>Campylobacter jejuni</topic><topic>Gastroenteritis</topic><topic>Genomics</topic><topic>Humans</topic><topic>Virulence Factors - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Cribb, Danielle M</creatorcontrib><creatorcontrib>Moffatt, Cameron R M</creatorcontrib><creatorcontrib>Wallace, Rhiannon L</creatorcontrib><creatorcontrib>McLure, Angus T</creatorcontrib><creatorcontrib>Bulach, Dieter</creatorcontrib><creatorcontrib>Jennison, Amy V</creatorcontrib><creatorcontrib>French, Nigel</creatorcontrib><creatorcontrib>Valcanis, Mary</creatorcontrib><creatorcontrib>Glass, Kathryn</creatorcontrib><creatorcontrib>Kirk, Martyn D</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbial genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Cribb, Danielle M</au><au>Moffatt, Cameron R M</au><au>Wallace, Rhiannon L</au><au>McLure, Angus T</au><au>Bulach, Dieter</au><au>Jennison, Amy V</au><au>French, Nigel</au><au>Valcanis, Mary</au><au>Glass, Kathryn</au><au>Kirk, Martyn D</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic and clinical characteristics of campylobacteriosis in Australia</atitle><jtitle>Microbial genomics</jtitle><addtitle>Microb Genom</addtitle><date>2024-01-01</date><risdate>2024</risdate><volume>10</volume><issue>1</issue><issn>2057-5858</issn><eissn>2057-5858</eissn><abstract>spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis cases from three Australian states and territories (2018-2019). We collected demographic, health status, risk factors, and self-reported disease data. We whole genome sequenced 422
.
and 84
.
case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65
.
and 21
.
sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as
(
) and
were prevalent (>90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g.
,
, and
) appeared to distinguish human
cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human
cases from food source isolates. Host factors like age and comorbidities have a greater influence on health outcomes than virulence factors.</abstract><cop>England</cop><pub>Microbiology Society</pub><pmid>38214338</pmid><doi>10.1099/mgen.0.001174</doi><orcidid>https://orcid.org/0000-0002-7200-1227</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Australia - epidemiology Campylobacter coli - genetics Campylobacter Infections - epidemiology Campylobacter Infections - microbiology Campylobacter jejuni Gastroenteritis Genomics Humans Virulence Factors - genetics |
title | Genomic and clinical characteristics of campylobacteriosis in Australia |
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