Genomic and clinical characteristics of campylobacteriosis in Australia

spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis...

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Veröffentlicht in:Microbial genomics 2024-01, Vol.10 (1)
Hauptverfasser: Cribb, Danielle M, Moffatt, Cameron R M, Wallace, Rhiannon L, McLure, Angus T, Bulach, Dieter, Jennison, Amy V, French, Nigel, Valcanis, Mary, Glass, Kathryn, Kirk, Martyn D
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container_title Microbial genomics
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creator Cribb, Danielle M
Moffatt, Cameron R M
Wallace, Rhiannon L
McLure, Angus T
Bulach, Dieter
Jennison, Amy V
French, Nigel
Valcanis, Mary
Glass, Kathryn
Kirk, Martyn D
description spp. are a common cause of bacterial gastroenteritis in Australia, primarily acquired from contaminated meat. We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis cases from three Australian states and territories (2018-2019). We collected demographic, health status, risk factors, and self-reported disease data. We whole genome sequenced 422 . and 84 . case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65 . and 21 . sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as ( ) and were prevalent (>90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g. , , and ) appeared to distinguish human cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human cases from food source isolates. Host factors like age and comorbidities have a greater influence on health outcomes than virulence factors.
doi_str_mv 10.1099/mgen.0.001174
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We investigated the relationship between genomic virulence characteristics and the severity of campylobacteriosis, hospitalisation, and other host factors.We recruited 571 campylobacteriosis cases from three Australian states and territories (2018-2019). We collected demographic, health status, risk factors, and self-reported disease data. We whole genome sequenced 422 . and 84 . case isolates along with 616 retail meat isolates. We classified case illness severity using a modified Vesikari scoring system, performed phylogenomic analysis, and explored risk factors for hospitalisation and illness severity.On average, cases experienced a 7.5 day diarrhoeal illness with additional symptoms including stomach cramps (87.1 %), fever (75.6 %), and nausea (72.0 %). Cases aged ≥75 years had milder symptoms, lower Vesikari scores, and higher odds of hospitalisation compared to younger cases. Chronic gastrointestinal illnesses also increased odds of hospitalisation. We observed significant diversity among isolates, with 65 . and 21 . sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as ( ) and were prevalent (&gt;90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g. , , and ) appeared to distinguish human cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human cases from food source isolates. 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We observed significant diversity among isolates, with 65 . and 21 . sequence types. Antimicrobial resistance genes were detected in 20.4 % of isolates, but multidrug resistance was rare (0.04 %). Key virulence genes such as ( ) and were prevalent (&gt;90 % presence) but did not correlate with disease severity or hospitalisation. However, certain genes (e.g. , , and ) appeared to distinguish human cases from food source isolates.Campylobacteriosis generally presents similarly across cases, though some are more severe. Genotypic virulence factors identified in the literature to-date do not predict disease severity but may differentiate human cases from food source isolates. 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subjects Australia - epidemiology
Campylobacter coli - genetics
Campylobacter Infections - epidemiology
Campylobacter Infections - microbiology
Campylobacter jejuni
Gastroenteritis
Genomics
Humans
Virulence Factors - genetics
title Genomic and clinical characteristics of campylobacteriosis in Australia
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