Machine learning for automatic identification of thoracoabdominal asynchrony in children
Background The current methods for assessment of thoracoabdominal asynchrony (TAA) require offline analysis on the part of physicians (respiratory inductance plethysmography (RIP)) or require experts for interpretation of the data (sleep apnea detection). Methods To assess synchrony between the thor...
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Veröffentlicht in: | Pediatric research 2021-04, Vol.89 (5), p.1232-1238 |
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description | Background
The current methods for assessment of thoracoabdominal asynchrony (TAA) require offline analysis on the part of physicians (respiratory inductance plethysmography (RIP)) or require experts for interpretation of the data (sleep apnea detection).
Methods
To assess synchrony between the thorax and abdomen, the movements of the two compartments during quiet breathing were measured using
pneu
RIP. Fifty-one recordings were obtained: 20 were used to train a machine-learning (ML) model with elastic-net regularization, and 31 were used to test the model’s performance. Two feature sets were explored: (1) phase difference (
ɸ
) between the thoracic and abdominal signals and (2) inverse cumulative percentage (ICP), which is an alternate measure of data distribution. To compute accuracy of training, the model outcomes were compared with five experts’ assessments.
Results
Accuracies of 61.3% and 90.3% were obtained using
ɸ
and ICP features, respectively. The inter-rater reliability (i.r.r.) of the assessments of experts was 0.402 and 0.684 when they used
ɸ
and ICP to identify TAA, respectively.
Conclusions
With this pilot study, we show the efficacy of the ICP feature and ML in developing an accurate automated approach to identifying TAA that reduces time and effort for diagnosis. ICP also helped improve consensus among experts.
Impact
Our article presents an automated approach to identifying thoracic abdominal asynchrony using machine learning and the
pneu
RIP device.
It also shows how a modified statistical measure of cumulative frequency can be used to visualize the progression of the pulmonary functionality along time.
The pulmonary testing method we developed gives patients and doctors a noninvasive and easy to administer and diagnose approach.
It can be administered remotely, and alerts can be transmitted to the physician.
Further, the test can also be used to monitor and assess pulmonary function continuously for prolonged periods, if needed. |
doi_str_mv | 10.1038/s41390-020-1032-1 |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10843835</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2526477800</sourcerecordid><originalsourceid>FETCH-LOGICAL-c428t-87748317e47a0dbb8c5896b8bd9cf42ca1753a2bb95d2325f627f4e95b9b75643</originalsourceid><addsrcrecordid>eNp1kUtLJDEUhYMo2rb-ADdDwI2b0jwrqZWI-ALFjYK7kKRS3ZGqxEmqhP73RtrHjOAq3NzvntycA8ABRscYUXmSGaYNqhBBValJhTfADHNabhgTm2CGEMUVbRq5A3ZzfkYIMy7ZNtihpCYIITEDT3faLn1wsHc6BR8WsIsJ6mmMgx69hb51YfSdt6WKAcYOjsuYtI3atHHwQfdQ51WwyxTDCvoAi1rfJhf2wFan--z2P845eLy8eDi_rm7vr27Oz24ry4gcKykEkxQLx4RGrTHSctnURpq2sR0jVmPBqSbGNLwllPCuJqJjruGmMYLXjM7B6Vr3ZTKDa21ZN-levSQ_6LRSUXv1fyf4pVrEV4WRZFRSXhSOPhRS_Du5PKrBZ-v6XgcXp6wII6i4Soks6OEP9DlOqZhQKE5qJoQsns8BXlM2xZyT6762wUi9B6fWwakS3HtNFC4zf_79xtfEZ1IFIGsgl1ZYuPT99O-qbwdipGQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2526477800</pqid></control><display><type>article</type><title>Machine learning for automatic identification of thoracoabdominal asynchrony in children</title><source>MEDLINE</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><creator>Ratnagiri, Madhavi V. ; Ryan, Lauren ; Strang, Abigail ; Heinle, Robert ; Rahman, Tariq ; Shaffer, Thomas H.</creator><creatorcontrib>Ratnagiri, Madhavi V. ; Ryan, Lauren ; Strang, Abigail ; Heinle, Robert ; Rahman, Tariq ; Shaffer, Thomas H.</creatorcontrib><description>Background
The current methods for assessment of thoracoabdominal asynchrony (TAA) require offline analysis on the part of physicians (respiratory inductance plethysmography (RIP)) or require experts for interpretation of the data (sleep apnea detection).
Methods
To assess synchrony between the thorax and abdomen, the movements of the two compartments during quiet breathing were measured using
pneu
RIP. Fifty-one recordings were obtained: 20 were used to train a machine-learning (ML) model with elastic-net regularization, and 31 were used to test the model’s performance. Two feature sets were explored: (1) phase difference (
ɸ
) between the thoracic and abdominal signals and (2) inverse cumulative percentage (ICP), which is an alternate measure of data distribution. To compute accuracy of training, the model outcomes were compared with five experts’ assessments.
Results
Accuracies of 61.3% and 90.3% were obtained using
ɸ
and ICP features, respectively. The inter-rater reliability (i.r.r.) of the assessments of experts was 0.402 and 0.684 when they used
ɸ
and ICP to identify TAA, respectively.
Conclusions
With this pilot study, we show the efficacy of the ICP feature and ML in developing an accurate automated approach to identifying TAA that reduces time and effort for diagnosis. ICP also helped improve consensus among experts.
Impact
Our article presents an automated approach to identifying thoracic abdominal asynchrony using machine learning and the
pneu
RIP device.
It also shows how a modified statistical measure of cumulative frequency can be used to visualize the progression of the pulmonary functionality along time.
The pulmonary testing method we developed gives patients and doctors a noninvasive and easy to administer and diagnose approach.
It can be administered remotely, and alerts can be transmitted to the physician.
Further, the test can also be used to monitor and assess pulmonary function continuously for prolonged periods, if needed.</description><identifier>ISSN: 0031-3998</identifier><identifier>EISSN: 1530-0447</identifier><identifier>DOI: 10.1038/s41390-020-1032-1</identifier><identifier>PMID: 32620007</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>Abdomen ; Abdomen - physiopathology ; Adolescent ; Algorithms ; Automation ; Child ; Child, Preschool ; Clinical Research Article ; Computer Graphics ; Humans ; Machine Learning ; Medicine ; Medicine & Public Health ; Observer Variation ; Pattern Recognition, Automated ; Pediatric Surgery ; Pediatrics ; Pilot Projects ; Plethysmography - instrumentation ; Plethysmography - methods ; Reproducibility of Results ; Respiration ; Respiratory Mechanics ; Respiratory Rate ; Signal Processing, Computer-Assisted ; Sleep Apnea Syndromes - diagnosis ; Thorax - physiopathology</subject><ispartof>Pediatric research, 2021-04, Vol.89 (5), p.1232-1238</ispartof><rights>International Pediatric Research Foundation, Inc 2020</rights><rights>International Pediatric Research Foundation, Inc 2020.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c428t-87748317e47a0dbb8c5896b8bd9cf42ca1753a2bb95d2325f627f4e95b9b75643</citedby><cites>FETCH-LOGICAL-c428t-87748317e47a0dbb8c5896b8bd9cf42ca1753a2bb95d2325f627f4e95b9b75643</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32620007$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ratnagiri, Madhavi V.</creatorcontrib><creatorcontrib>Ryan, Lauren</creatorcontrib><creatorcontrib>Strang, Abigail</creatorcontrib><creatorcontrib>Heinle, Robert</creatorcontrib><creatorcontrib>Rahman, Tariq</creatorcontrib><creatorcontrib>Shaffer, Thomas H.</creatorcontrib><title>Machine learning for automatic identification of thoracoabdominal asynchrony in children</title><title>Pediatric research</title><addtitle>Pediatr Res</addtitle><addtitle>Pediatr Res</addtitle><description>Background
The current methods for assessment of thoracoabdominal asynchrony (TAA) require offline analysis on the part of physicians (respiratory inductance plethysmography (RIP)) or require experts for interpretation of the data (sleep apnea detection).
Methods
To assess synchrony between the thorax and abdomen, the movements of the two compartments during quiet breathing were measured using
pneu
RIP. Fifty-one recordings were obtained: 20 were used to train a machine-learning (ML) model with elastic-net regularization, and 31 were used to test the model’s performance. Two feature sets were explored: (1) phase difference (
ɸ
) between the thoracic and abdominal signals and (2) inverse cumulative percentage (ICP), which is an alternate measure of data distribution. To compute accuracy of training, the model outcomes were compared with five experts’ assessments.
Results
Accuracies of 61.3% and 90.3% were obtained using
ɸ
and ICP features, respectively. The inter-rater reliability (i.r.r.) of the assessments of experts was 0.402 and 0.684 when they used
ɸ
and ICP to identify TAA, respectively.
Conclusions
With this pilot study, we show the efficacy of the ICP feature and ML in developing an accurate automated approach to identifying TAA that reduces time and effort for diagnosis. ICP also helped improve consensus among experts.
Impact
Our article presents an automated approach to identifying thoracic abdominal asynchrony using machine learning and the
pneu
RIP device.
It also shows how a modified statistical measure of cumulative frequency can be used to visualize the progression of the pulmonary functionality along time.
The pulmonary testing method we developed gives patients and doctors a noninvasive and easy to administer and diagnose approach.
It can be administered remotely, and alerts can be transmitted to the physician.
Further, the test can also be used to monitor and assess pulmonary function continuously for prolonged periods, if needed.</description><subject>Abdomen</subject><subject>Abdomen - physiopathology</subject><subject>Adolescent</subject><subject>Algorithms</subject><subject>Automation</subject><subject>Child</subject><subject>Child, Preschool</subject><subject>Clinical Research Article</subject><subject>Computer Graphics</subject><subject>Humans</subject><subject>Machine Learning</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Observer Variation</subject><subject>Pattern Recognition, Automated</subject><subject>Pediatric Surgery</subject><subject>Pediatrics</subject><subject>Pilot Projects</subject><subject>Plethysmography - instrumentation</subject><subject>Plethysmography - methods</subject><subject>Reproducibility of Results</subject><subject>Respiration</subject><subject>Respiratory Mechanics</subject><subject>Respiratory Rate</subject><subject>Signal Processing, Computer-Assisted</subject><subject>Sleep Apnea Syndromes - diagnosis</subject><subject>Thorax - physiopathology</subject><issn>0031-3998</issn><issn>1530-0447</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><recordid>eNp1kUtLJDEUhYMo2rb-ADdDwI2b0jwrqZWI-ALFjYK7kKRS3ZGqxEmqhP73RtrHjOAq3NzvntycA8ABRscYUXmSGaYNqhBBValJhTfADHNabhgTm2CGEMUVbRq5A3ZzfkYIMy7ZNtihpCYIITEDT3faLn1wsHc6BR8WsIsJ6mmMgx69hb51YfSdt6WKAcYOjsuYtI3atHHwQfdQ51WwyxTDCvoAi1rfJhf2wFan--z2P845eLy8eDi_rm7vr27Oz24ry4gcKykEkxQLx4RGrTHSctnURpq2sR0jVmPBqSbGNLwllPCuJqJjruGmMYLXjM7B6Vr3ZTKDa21ZN-levSQ_6LRSUXv1fyf4pVrEV4WRZFRSXhSOPhRS_Du5PKrBZ-v6XgcXp6wII6i4Soks6OEP9DlOqZhQKE5qJoQsns8BXlM2xZyT6762wUi9B6fWwakS3HtNFC4zf_79xtfEZ1IFIGsgl1ZYuPT99O-qbwdipGQ</recordid><startdate>20210401</startdate><enddate>20210401</enddate><creator>Ratnagiri, Madhavi V.</creator><creator>Ryan, Lauren</creator><creator>Strang, Abigail</creator><creator>Heinle, Robert</creator><creator>Rahman, Tariq</creator><creator>Shaffer, Thomas H.</creator><general>Nature Publishing Group US</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8C1</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20210401</creationdate><title>Machine learning for automatic identification of thoracoabdominal asynchrony in children</title><author>Ratnagiri, Madhavi V. ; Ryan, Lauren ; Strang, Abigail ; Heinle, Robert ; Rahman, Tariq ; Shaffer, Thomas H.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c428t-87748317e47a0dbb8c5896b8bd9cf42ca1753a2bb95d2325f627f4e95b9b75643</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Abdomen</topic><topic>Abdomen - physiopathology</topic><topic>Adolescent</topic><topic>Algorithms</topic><topic>Automation</topic><topic>Child</topic><topic>Child, Preschool</topic><topic>Clinical Research Article</topic><topic>Computer Graphics</topic><topic>Humans</topic><topic>Machine Learning</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Observer Variation</topic><topic>Pattern Recognition, Automated</topic><topic>Pediatric Surgery</topic><topic>Pediatrics</topic><topic>Pilot Projects</topic><topic>Plethysmography - instrumentation</topic><topic>Plethysmography - methods</topic><topic>Reproducibility of Results</topic><topic>Respiration</topic><topic>Respiratory Mechanics</topic><topic>Respiratory Rate</topic><topic>Signal Processing, Computer-Assisted</topic><topic>Sleep Apnea Syndromes - diagnosis</topic><topic>Thorax - physiopathology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ratnagiri, Madhavi V.</creatorcontrib><creatorcontrib>Ryan, Lauren</creatorcontrib><creatorcontrib>Strang, Abigail</creatorcontrib><creatorcontrib>Heinle, Robert</creatorcontrib><creatorcontrib>Rahman, Tariq</creatorcontrib><creatorcontrib>Shaffer, Thomas H.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Public Health Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Pediatric research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ratnagiri, Madhavi V.</au><au>Ryan, Lauren</au><au>Strang, Abigail</au><au>Heinle, Robert</au><au>Rahman, Tariq</au><au>Shaffer, Thomas H.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Machine learning for automatic identification of thoracoabdominal asynchrony in children</atitle><jtitle>Pediatric research</jtitle><stitle>Pediatr Res</stitle><addtitle>Pediatr Res</addtitle><date>2021-04-01</date><risdate>2021</risdate><volume>89</volume><issue>5</issue><spage>1232</spage><epage>1238</epage><pages>1232-1238</pages><issn>0031-3998</issn><eissn>1530-0447</eissn><abstract>Background
The current methods for assessment of thoracoabdominal asynchrony (TAA) require offline analysis on the part of physicians (respiratory inductance plethysmography (RIP)) or require experts for interpretation of the data (sleep apnea detection).
Methods
To assess synchrony between the thorax and abdomen, the movements of the two compartments during quiet breathing were measured using
pneu
RIP. Fifty-one recordings were obtained: 20 were used to train a machine-learning (ML) model with elastic-net regularization, and 31 were used to test the model’s performance. Two feature sets were explored: (1) phase difference (
ɸ
) between the thoracic and abdominal signals and (2) inverse cumulative percentage (ICP), which is an alternate measure of data distribution. To compute accuracy of training, the model outcomes were compared with five experts’ assessments.
Results
Accuracies of 61.3% and 90.3% were obtained using
ɸ
and ICP features, respectively. The inter-rater reliability (i.r.r.) of the assessments of experts was 0.402 and 0.684 when they used
ɸ
and ICP to identify TAA, respectively.
Conclusions
With this pilot study, we show the efficacy of the ICP feature and ML in developing an accurate automated approach to identifying TAA that reduces time and effort for diagnosis. ICP also helped improve consensus among experts.
Impact
Our article presents an automated approach to identifying thoracic abdominal asynchrony using machine learning and the
pneu
RIP device.
It also shows how a modified statistical measure of cumulative frequency can be used to visualize the progression of the pulmonary functionality along time.
The pulmonary testing method we developed gives patients and doctors a noninvasive and easy to administer and diagnose approach.
It can be administered remotely, and alerts can be transmitted to the physician.
Further, the test can also be used to monitor and assess pulmonary function continuously for prolonged periods, if needed.</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>32620007</pmid><doi>10.1038/s41390-020-1032-1</doi><tpages>7</tpages></addata></record> |
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source | MEDLINE; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
subjects | Abdomen Abdomen - physiopathology Adolescent Algorithms Automation Child Child, Preschool Clinical Research Article Computer Graphics Humans Machine Learning Medicine Medicine & Public Health Observer Variation Pattern Recognition, Automated Pediatric Surgery Pediatrics Pilot Projects Plethysmography - instrumentation Plethysmography - methods Reproducibility of Results Respiration Respiratory Mechanics Respiratory Rate Signal Processing, Computer-Assisted Sleep Apnea Syndromes - diagnosis Thorax - physiopathology |
title | Machine learning for automatic identification of thoracoabdominal asynchrony in children |
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