Fungal microbiota sustains lasting immune activation of neutrophils and their progenitors in severe COVID-19

Gastrointestinal fungal dysbiosis is a hallmark of several diseases marked by systemic immune activation. Whether persistent pathobiont colonization during immune alterations and impaired gut barrier function has a durable impact on host immunity is unknown. We found that elevated levels of Candida...

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Veröffentlicht in:Nature immunology 2023-11, Vol.24 (11), p.1879-1889
Hauptverfasser: Kusakabe, Takato, Lin, Woan-Yu, Cheong, Jin-Gyu, Singh, Gagandeep, Ravishankar, Arjun, Yeung, Stephen T., Mesko, Marissa, DeCelie, Meghan Bialt, Carriche, Guilhermina, Zhao, Zhen, Rand, Sophie, Doron, Itai, Putzel, Gregory G., Worgall, Stefan, Cushing, Melissa, Westblade, Lars, Inghirami, Giorgio, Parkhurst, Christopher N., Guo, Chun-Jun, Schotsaert, Michael, García-Sastre, Adolfo, Josefowicz, Steven Z., Salvatore, Mirella, Iliev, Iliyan D.
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container_end_page 1889
container_issue 11
container_start_page 1879
container_title Nature immunology
container_volume 24
creator Kusakabe, Takato
Lin, Woan-Yu
Cheong, Jin-Gyu
Singh, Gagandeep
Ravishankar, Arjun
Yeung, Stephen T.
Mesko, Marissa
DeCelie, Meghan Bialt
Carriche, Guilhermina
Zhao, Zhen
Rand, Sophie
Doron, Itai
Putzel, Gregory G.
Worgall, Stefan
Cushing, Melissa
Westblade, Lars
Inghirami, Giorgio
Parkhurst, Christopher N.
Guo, Chun-Jun
Schotsaert, Michael
García-Sastre, Adolfo
Josefowicz, Steven Z.
Salvatore, Mirella
Iliev, Iliyan D.
description Gastrointestinal fungal dysbiosis is a hallmark of several diseases marked by systemic immune activation. Whether persistent pathobiont colonization during immune alterations and impaired gut barrier function has a durable impact on host immunity is unknown. We found that elevated levels of Candida albicans immunoglobulin G (IgG) antibodies marked patients with severe COVID-19 (sCOVID-19) who had intestinal Candida overgrowth, mycobiota dysbiosis and systemic neutrophilia. Analysis of hematopoietic stem cell progenitors in sCOVID-19 revealed transcriptional changes in antifungal immunity pathways and reprogramming of granulocyte myeloid progenitors (GMPs) for up to a year. Mice colonized with C. albicans patient isolates experienced increased lung neutrophilia and pulmonary NETosis during severe acute respiratory syndrome coronavirus-2 infection, which were partially resolved with antifungal treatment or by interleukin-6 receptor blockade. sCOVID-19 patients treated with tocilizumab experienced sustained reductions in C. albicans IgG antibodies titers and GMP transcriptional changes. These findings suggest that gut fungal pathobionts may contribute to immune activation during inflammatory diseases, offering potential mycobiota-immune therapeutic strategies for sCOVID-19 with prolonged symptoms. Iliev et al. report that increased Candida albicans accumulation in the mycobiota of patients with severe COVID-19 might be a contributing factor to the immunopathology of severe COVID-19 and have long-lasting effects on the hematopoietic stem cell compartment.
doi_str_mv 10.1038/s41590-023-01637-4
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COVID-19</atitle><jtitle>Nature immunology</jtitle><stitle>Nat Immunol</stitle><addtitle>Nat Immunol</addtitle><date>2023-11-01</date><risdate>2023</risdate><volume>24</volume><issue>11</issue><spage>1879</spage><epage>1889</epage><pages>1879-1889</pages><issn>1529-2908</issn><eissn>1529-2916</eissn><abstract>Gastrointestinal fungal dysbiosis is a hallmark of several diseases marked by systemic immune activation. Whether persistent pathobiont colonization during immune alterations and impaired gut barrier function has a durable impact on host immunity is unknown. We found that elevated levels of Candida albicans immunoglobulin G (IgG) antibodies marked patients with severe COVID-19 (sCOVID-19) who had intestinal Candida overgrowth, mycobiota dysbiosis and systemic neutrophilia. Analysis of hematopoietic stem cell progenitors in sCOVID-19 revealed transcriptional changes in antifungal immunity pathways and reprogramming of granulocyte myeloid progenitors (GMPs) for up to a year. Mice colonized with C. albicans patient isolates experienced increased lung neutrophilia and pulmonary NETosis during severe acute respiratory syndrome coronavirus-2 infection, which were partially resolved with antifungal treatment or by interleukin-6 receptor blockade. sCOVID-19 patients treated with tocilizumab experienced sustained reductions in C. albicans IgG antibodies titers and GMP transcriptional changes. These findings suggest that gut fungal pathobionts may contribute to immune activation during inflammatory diseases, offering potential mycobiota-immune therapeutic strategies for sCOVID-19 with prolonged symptoms. Iliev et al. report that increased Candida albicans accumulation in the mycobiota of patients with severe COVID-19 might be a contributing factor to the immunopathology of severe COVID-19 and have long-lasting effects on the hematopoietic stem cell compartment.</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>37872315</pmid><doi>10.1038/s41590-023-01637-4</doi><tpages>11</tpages><orcidid>https://orcid.org/0000-0001-5566-0864</orcidid><orcidid>https://orcid.org/0000-0003-3156-3132</orcidid><orcidid>https://orcid.org/0000-0002-8296-0376</orcidid><orcidid>https://orcid.org/0000-0003-3260-2631</orcidid><orcidid>https://orcid.org/0000-0002-6551-1827</orcidid><orcidid>https://orcid.org/0000-0002-9742-5982</orcidid><orcidid>https://orcid.org/0000-0001-7453-779X</orcidid><orcidid>https://orcid.org/0000-0001-8366-4838</orcidid><orcidid>https://orcid.org/0000-0003-0884-9749</orcidid></addata></record>
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identifier ISSN: 1529-2908
ispartof Nature immunology, 2023-11, Vol.24 (11), p.1879-1889
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Animals
Antifungal Agents
Biomedical and Life Sciences
Biomedicine
Candida albicans
Cell activation
Coronaviruses
COVID-19
Digestive system
Dysbacteriosis
Dysbiosis
Gastrointestinal tract
Hematopoietic stem cells
Hemopoiesis
Humans
Immune response
Immunity
Immunoglobulin G
Immunology
Infectious Diseases
Inflammatory diseases
Interleukin 6
Leukocytes (granulocytic)
Leukocytes (neutrophilic)
Mice
Mycobiome
Neutrophilia
Neutrophils
Progenitor cells
Severe acute respiratory syndrome coronavirus 2
Stem cells
title Fungal microbiota sustains lasting immune activation of neutrophils and their progenitors in severe COVID-19
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