Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022
Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were p...
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creator | Nguyen, Diep T. Sumner, Kelsey M. Nguyen, Thoa T. M. Phan, Minh Q. Hoang, Tien M. Vo, Chuong D. Nguyen, Tho D. Nguyen, Phuong T. Yang, Genyan Jang, Yunho Jones, Joyce Olsen, Sonja J. Gould, Philip L. Nguyen, Long V. Davis, Charles Todd |
description | Background
Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam.
Methods
Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation.
Results
A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance.
Conclusions
In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness. |
doi_str_mv | 10.1111/irv.13245 |
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fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10752245</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2906201908</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4045-704dcaee325fc3806cce1dfa73329d954732e91edae4a034e631b76607d3bb2e3</originalsourceid><addsrcrecordid>eNp1kc1K9DAUhoN84v_CG5DCt1Fw9OSvma5kEP9AEETdhjQ91Win1aSt6Mp78A69EjOODiqYTULy8PCevISsU9ihce063-9QzoScI0tUSRiwVGb_ZmcBi2Q5hFsAmQ6lWCCLfEhFljG1RC5GvTN14uqy6rB-Nslo81huJb3zXUis87arTOuaCZFUrsckd75IxsbfYRsml1cO29qMtxMGVL29vDJgbJXMl6YKuPa5r5DLw4OL_ePB6dnRyf7odGAFCDlQIAprEDmTpeVDSK1FWpRGcc6yIpNCcYYZxcKgMMAFppzmKk1BFTzPGfIVsjf13nf5GAuLdetNpe-9iwGfdGOc_vlSuxt93fSagpIs_lc0bH4afPPQYWj12AWLVWVqbLqgWQapUpIDi-j_X-ht0_k6zvdBxfEzGEZqa0pZ34TgsZyloaAnZelYlv4oK7Ib3-PPyK92IrA7BR5dhU9_m_TJ-dVU-Q4NT50r</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2906201908</pqid></control><display><type>article</type><title>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</title><source>Wiley Online Library Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Wiley Online Library Journals Frontfile Complete</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Nguyen, Diep T. ; Sumner, Kelsey M. ; Nguyen, Thoa T. M. ; Phan, Minh Q. ; Hoang, Tien M. ; Vo, Chuong D. ; Nguyen, Tho D. ; Nguyen, Phuong T. ; Yang, Genyan ; Jang, Yunho ; Jones, Joyce ; Olsen, Sonja J. ; Gould, Philip L. ; Nguyen, Long V. ; Davis, Charles Todd</creator><creatorcontrib>Nguyen, Diep T. ; Sumner, Kelsey M. ; Nguyen, Thoa T. M. ; Phan, Minh Q. ; Hoang, Tien M. ; Vo, Chuong D. ; Nguyen, Tho D. ; Nguyen, Phuong T. ; Yang, Genyan ; Jang, Yunho ; Jones, Joyce ; Olsen, Sonja J. ; Gould, Philip L. ; Nguyen, Long V. ; Davis, Charles Todd</creatorcontrib><description>Background
Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam.
Methods
Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation.
Results
A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance.
Conclusions
In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.</description><identifier>ISSN: 1750-2640</identifier><identifier>ISSN: 1750-2659</identifier><identifier>EISSN: 1750-2659</identifier><identifier>DOI: 10.1111/irv.13245</identifier><identifier>PMID: 38149927</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Avian flu ; avian influenza ; Birds ; Collaboration ; Epidemics ; Influenza ; Influenza A ; live bird markets ; Medical laboratories ; Original ; Outbreaks ; Polymerase chain reaction ; Poultry ; Provinces ; Situational awareness ; Surveillance ; Vietnam ; Viruses</subject><ispartof>Influenza and other respiratory viruses, 2023-12, Vol.17 (12), p.e13245-n/a</ispartof><rights>2023 The Authors. published by John Wiley & Sons Ltd. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.</rights><rights>2023 The Authors. Influenza and Other Respiratory Viruses published by John Wiley & Sons Ltd. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.</rights><rights>2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c4045-704dcaee325fc3806cce1dfa73329d954732e91edae4a034e631b76607d3bb2e3</cites><orcidid>0000-0002-4479-897X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10752245/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10752245/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,1411,11541,27901,27902,45550,45551,46027,46451,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38149927$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nguyen, Diep T.</creatorcontrib><creatorcontrib>Sumner, Kelsey M.</creatorcontrib><creatorcontrib>Nguyen, Thoa T. M.</creatorcontrib><creatorcontrib>Phan, Minh Q.</creatorcontrib><creatorcontrib>Hoang, Tien M.</creatorcontrib><creatorcontrib>Vo, Chuong D.</creatorcontrib><creatorcontrib>Nguyen, Tho D.</creatorcontrib><creatorcontrib>Nguyen, Phuong T.</creatorcontrib><creatorcontrib>Yang, Genyan</creatorcontrib><creatorcontrib>Jang, Yunho</creatorcontrib><creatorcontrib>Jones, Joyce</creatorcontrib><creatorcontrib>Olsen, Sonja J.</creatorcontrib><creatorcontrib>Gould, Philip L.</creatorcontrib><creatorcontrib>Nguyen, Long V.</creatorcontrib><creatorcontrib>Davis, Charles Todd</creatorcontrib><title>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</title><title>Influenza and other respiratory viruses</title><addtitle>Influenza Other Respir Viruses</addtitle><description>Background
Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam.
Methods
Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation.
Results
A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance.
Conclusions
In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.</description><subject>Avian flu</subject><subject>avian influenza</subject><subject>Birds</subject><subject>Collaboration</subject><subject>Epidemics</subject><subject>Influenza</subject><subject>Influenza A</subject><subject>live bird markets</subject><subject>Medical laboratories</subject><subject>Original</subject><subject>Outbreaks</subject><subject>Polymerase chain reaction</subject><subject>Poultry</subject><subject>Provinces</subject><subject>Situational awareness</subject><subject>Surveillance</subject><subject>Vietnam</subject><subject>Viruses</subject><issn>1750-2640</issn><issn>1750-2659</issn><issn>1750-2659</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>BENPR</sourceid><recordid>eNp1kc1K9DAUhoN84v_CG5DCt1Fw9OSvma5kEP9AEETdhjQ91Win1aSt6Mp78A69EjOODiqYTULy8PCevISsU9ihce063-9QzoScI0tUSRiwVGb_ZmcBi2Q5hFsAmQ6lWCCLfEhFljG1RC5GvTN14uqy6rB-Nslo81huJb3zXUis87arTOuaCZFUrsckd75IxsbfYRsml1cO29qMtxMGVL29vDJgbJXMl6YKuPa5r5DLw4OL_ePB6dnRyf7odGAFCDlQIAprEDmTpeVDSK1FWpRGcc6yIpNCcYYZxcKgMMAFppzmKk1BFTzPGfIVsjf13nf5GAuLdetNpe-9iwGfdGOc_vlSuxt93fSagpIs_lc0bH4afPPQYWj12AWLVWVqbLqgWQapUpIDi-j_X-ht0_k6zvdBxfEzGEZqa0pZ34TgsZyloaAnZelYlv4oK7Ib3-PPyK92IrA7BR5dhU9_m_TJ-dVU-Q4NT50r</recordid><startdate>202312</startdate><enddate>202312</enddate><creator>Nguyen, Diep T.</creator><creator>Sumner, Kelsey M.</creator><creator>Nguyen, Thoa T. M.</creator><creator>Phan, Minh Q.</creator><creator>Hoang, Tien M.</creator><creator>Vo, Chuong D.</creator><creator>Nguyen, Tho D.</creator><creator>Nguyen, Phuong T.</creator><creator>Yang, Genyan</creator><creator>Jang, Yunho</creator><creator>Jones, Joyce</creator><creator>Olsen, Sonja J.</creator><creator>Gould, Philip L.</creator><creator>Nguyen, Long V.</creator><creator>Davis, Charles Todd</creator><general>John Wiley & Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T2</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4479-897X</orcidid></search><sort><creationdate>202312</creationdate><title>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</title><author>Nguyen, Diep T. ; Sumner, Kelsey M. ; Nguyen, Thoa T. M. ; Phan, Minh Q. ; Hoang, Tien M. ; Vo, Chuong D. ; Nguyen, Tho D. ; Nguyen, Phuong T. ; Yang, Genyan ; Jang, Yunho ; Jones, Joyce ; Olsen, Sonja J. ; Gould, Philip L. ; Nguyen, Long V. ; Davis, Charles Todd</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4045-704dcaee325fc3806cce1dfa73329d954732e91edae4a034e631b76607d3bb2e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Avian flu</topic><topic>avian influenza</topic><topic>Birds</topic><topic>Collaboration</topic><topic>Epidemics</topic><topic>Influenza</topic><topic>Influenza A</topic><topic>live bird markets</topic><topic>Medical laboratories</topic><topic>Original</topic><topic>Outbreaks</topic><topic>Polymerase chain reaction</topic><topic>Poultry</topic><topic>Provinces</topic><topic>Situational awareness</topic><topic>Surveillance</topic><topic>Vietnam</topic><topic>Viruses</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Nguyen, Diep T.</creatorcontrib><creatorcontrib>Sumner, Kelsey M.</creatorcontrib><creatorcontrib>Nguyen, Thoa T. M.</creatorcontrib><creatorcontrib>Phan, Minh Q.</creatorcontrib><creatorcontrib>Hoang, Tien M.</creatorcontrib><creatorcontrib>Vo, Chuong D.</creatorcontrib><creatorcontrib>Nguyen, Tho D.</creatorcontrib><creatorcontrib>Nguyen, Phuong T.</creatorcontrib><creatorcontrib>Yang, Genyan</creatorcontrib><creatorcontrib>Jang, Yunho</creatorcontrib><creatorcontrib>Jones, Joyce</creatorcontrib><creatorcontrib>Olsen, Sonja J.</creatorcontrib><creatorcontrib>Gould, Philip L.</creatorcontrib><creatorcontrib>Nguyen, Long V.</creatorcontrib><creatorcontrib>Davis, Charles Todd</creatorcontrib><collection>Wiley Online Library Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Influenza and other respiratory viruses</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nguyen, Diep T.</au><au>Sumner, Kelsey M.</au><au>Nguyen, Thoa T. M.</au><au>Phan, Minh Q.</au><au>Hoang, Tien M.</au><au>Vo, Chuong D.</au><au>Nguyen, Tho D.</au><au>Nguyen, Phuong T.</au><au>Yang, Genyan</au><au>Jang, Yunho</au><au>Jones, Joyce</au><au>Olsen, Sonja J.</au><au>Gould, Philip L.</au><au>Nguyen, Long V.</au><au>Davis, Charles Todd</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</atitle><jtitle>Influenza and other respiratory viruses</jtitle><addtitle>Influenza Other Respir Viruses</addtitle><date>2023-12</date><risdate>2023</risdate><volume>17</volume><issue>12</issue><spage>e13245</spage><epage>n/a</epage><pages>e13245-n/a</pages><issn>1750-2640</issn><issn>1750-2659</issn><eissn>1750-2659</eissn><abstract>Background
Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam.
Methods
Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation.
Results
A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance.
Conclusions
In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>38149927</pmid><doi>10.1111/irv.13245</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-4479-897X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Avian flu avian influenza Birds Collaboration Epidemics Influenza Influenza A live bird markets Medical laboratories Original Outbreaks Polymerase chain reaction Poultry Provinces Situational awareness Surveillance Vietnam Viruses |
title | Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022 |
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