Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022

Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were p...

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Veröffentlicht in:Influenza and other respiratory viruses 2023-12, Vol.17 (12), p.e13245-n/a
Hauptverfasser: Nguyen, Diep T., Sumner, Kelsey M., Nguyen, Thoa T. M., Phan, Minh Q., Hoang, Tien M., Vo, Chuong D., Nguyen, Tho D., Nguyen, Phuong T., Yang, Genyan, Jang, Yunho, Jones, Joyce, Olsen, Sonja J., Gould, Philip L., Nguyen, Long V., Davis, Charles Todd
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container_issue 12
container_start_page e13245
container_title Influenza and other respiratory viruses
container_volume 17
creator Nguyen, Diep T.
Sumner, Kelsey M.
Nguyen, Thoa T. M.
Phan, Minh Q.
Hoang, Tien M.
Vo, Chuong D.
Nguyen, Tho D.
Nguyen, Phuong T.
Yang, Genyan
Jang, Yunho
Jones, Joyce
Olsen, Sonja J.
Gould, Philip L.
Nguyen, Long V.
Davis, Charles Todd
description Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam. Methods Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation. Results A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance. Conclusions In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.
doi_str_mv 10.1111/irv.13245
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M. ; Phan, Minh Q. ; Hoang, Tien M. ; Vo, Chuong D. ; Nguyen, Tho D. ; Nguyen, Phuong T. ; Yang, Genyan ; Jang, Yunho ; Jones, Joyce ; Olsen, Sonja J. ; Gould, Philip L. ; Nguyen, Long V. ; Davis, Charles Todd</creator><creatorcontrib>Nguyen, Diep T. ; Sumner, Kelsey M. ; Nguyen, Thoa T. M. ; Phan, Minh Q. ; Hoang, Tien M. ; Vo, Chuong D. ; Nguyen, Tho D. ; Nguyen, Phuong T. ; Yang, Genyan ; Jang, Yunho ; Jones, Joyce ; Olsen, Sonja J. ; Gould, Philip L. ; Nguyen, Long V. ; Davis, Charles Todd</creatorcontrib><description>Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam. Methods Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation. Results A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance. Conclusions In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.</description><identifier>ISSN: 1750-2640</identifier><identifier>ISSN: 1750-2659</identifier><identifier>EISSN: 1750-2659</identifier><identifier>DOI: 10.1111/irv.13245</identifier><identifier>PMID: 38149927</identifier><language>eng</language><publisher>England: John Wiley &amp; Sons, Inc</publisher><subject>Avian flu ; avian influenza ; Birds ; Collaboration ; Epidemics ; Influenza ; Influenza A ; live bird markets ; Medical laboratories ; Original ; Outbreaks ; Polymerase chain reaction ; Poultry ; Provinces ; Situational awareness ; Surveillance ; Vietnam ; Viruses</subject><ispartof>Influenza and other respiratory viruses, 2023-12, Vol.17 (12), p.e13245-n/a</ispartof><rights>2023 The Authors. published by John Wiley &amp; Sons Ltd. 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Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c4045-704dcaee325fc3806cce1dfa73329d954732e91edae4a034e631b76607d3bb2e3</cites><orcidid>0000-0002-4479-897X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10752245/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10752245/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,1411,11541,27901,27902,45550,45551,46027,46451,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38149927$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Nguyen, Diep T.</creatorcontrib><creatorcontrib>Sumner, Kelsey M.</creatorcontrib><creatorcontrib>Nguyen, Thoa T. M.</creatorcontrib><creatorcontrib>Phan, Minh Q.</creatorcontrib><creatorcontrib>Hoang, Tien M.</creatorcontrib><creatorcontrib>Vo, Chuong D.</creatorcontrib><creatorcontrib>Nguyen, Tho D.</creatorcontrib><creatorcontrib>Nguyen, Phuong T.</creatorcontrib><creatorcontrib>Yang, Genyan</creatorcontrib><creatorcontrib>Jang, Yunho</creatorcontrib><creatorcontrib>Jones, Joyce</creatorcontrib><creatorcontrib>Olsen, Sonja J.</creatorcontrib><creatorcontrib>Gould, Philip L.</creatorcontrib><creatorcontrib>Nguyen, Long V.</creatorcontrib><creatorcontrib>Davis, Charles Todd</creatorcontrib><title>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</title><title>Influenza and other respiratory viruses</title><addtitle>Influenza Other Respir Viruses</addtitle><description>Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam. Methods Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation. Results A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance. Conclusions In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. 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M.</creator><creator>Phan, Minh Q.</creator><creator>Hoang, Tien M.</creator><creator>Vo, Chuong D.</creator><creator>Nguyen, Tho D.</creator><creator>Nguyen, Phuong T.</creator><creator>Yang, Genyan</creator><creator>Jang, Yunho</creator><creator>Jones, Joyce</creator><creator>Olsen, Sonja J.</creator><creator>Gould, Philip L.</creator><creator>Nguyen, Long V.</creator><creator>Davis, Charles Todd</creator><general>John Wiley &amp; Sons, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T2</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-4479-897X</orcidid></search><sort><creationdate>202312</creationdate><title>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</title><author>Nguyen, Diep T. ; Sumner, Kelsey M. ; Nguyen, Thoa T. 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M.</au><au>Phan, Minh Q.</au><au>Hoang, Tien M.</au><au>Vo, Chuong D.</au><au>Nguyen, Tho D.</au><au>Nguyen, Phuong T.</au><au>Yang, Genyan</au><au>Jang, Yunho</au><au>Jones, Joyce</au><au>Olsen, Sonja J.</au><au>Gould, Philip L.</au><au>Nguyen, Long V.</au><au>Davis, Charles Todd</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022</atitle><jtitle>Influenza and other respiratory viruses</jtitle><addtitle>Influenza Other Respir Viruses</addtitle><date>2023-12</date><risdate>2023</risdate><volume>17</volume><issue>12</issue><spage>e13245</spage><epage>n/a</epage><pages>e13245-n/a</pages><issn>1750-2640</issn><issn>1750-2659</issn><eissn>1750-2659</eissn><abstract>Background Highly pathogenic avian influenza A(H5) human infections are a global concern, with many A(H5) human cases detected in Vietnam, including a case in October 2022. Using avian influenza virus surveillance from March 2017–September 2022, we described the percent of pooled samples that were positive for avian influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses in live bird markets (LBMs) in Vietnam. Methods Monthly at each LBM, 30 poultry oropharyngeal swab specimens and five environmental samples were collected. Samples were pooled in groups of five and tested for influenza A, A(H5), A(H5N1), A(H5N6), and A(H5N8) viruses by real‐time reverse‐transcription polymerase chain reaction. Trends in the percent of pooled samples that were positive for avian influenza were summarized by LBM characteristics and time and compared with the number of passively detected avian influenza outbreaks using Spearman's rank correlation. Results A total of 25,774 pooled samples were collected through active surveillance at 167 LBMs in 24 provinces; 36.9% of pooled samples were positive for influenza A, 3.6% A(H5), 1.9% A(H5N1), 1.1% A(H5N6), and 0.2% A(H5N8). Influenza A(H5) viruses were identified January–December and at least once in 91.7% of sampled provinces. In 246 A(H5) outbreaks in poultry; 20.3% were influenza A(H5N1), 60.2% A(H5N6), and 19.5% A(H5N8); outbreaks did not correlate with active surveillance. Conclusions In Vietnam, influenza A(H5) viruses were detected by active surveillance in LBMs year‐round and in most provinces sampled. In addition to outbreak reporting, active surveillance for A(H5) viruses in settings with high potential for animal‐to‐human spillover can provide situational awareness.</abstract><cop>England</cop><pub>John Wiley &amp; Sons, Inc</pub><pmid>38149927</pmid><doi>10.1111/irv.13245</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-4479-897X</orcidid><oa>free_for_read</oa></addata></record>
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subjects Avian flu
avian influenza
Birds
Collaboration
Epidemics
Influenza
Influenza A
live bird markets
Medical laboratories
Original
Outbreaks
Polymerase chain reaction
Poultry
Provinces
Situational awareness
Surveillance
Vietnam
Viruses
title Avian influenza A(H5) virus circulation in live bird markets in Vietnam, 2017–2022
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