Performance of a RAD51-based functional HRD test on paraffin-embedded breast cancer tissue
Purpose BRCA- deficient breast cancers (BC) are highly sensitive to platinum-based chemotherapy and PARP inhibitors due to their deficiency in the homologous recombination (HR) pathway. However, HR deficiency (HRD) extends beyond BRCA -associated BC, highlighting the need for a sensitive method to e...
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description | Purpose
BRCA-
deficient breast cancers (BC) are highly sensitive to platinum-based chemotherapy and PARP inhibitors due to their deficiency in the homologous recombination (HR) pathway. However, HR deficiency (HRD) extends beyond
BRCA
-associated BC, highlighting the need for a sensitive method to enrich for HRD tumors in an alternative way. A promising approach is the use of functional HRD tests which evaluate the HR capability of tumor cells by measuring RAD51 protein accumulation at DNA damage sites. This study aims to evaluate the performance of a functional RAD51-based HRD test for the identification of HRD BC.
Methods
The functional HR status of 63 diagnostic formalin-fixed paraffin-embedded (FFPE) BC samples was determined by applying the RAD51-FFPE test. Samples were screened for the presence of (epi)genetic defects in HR and matching tumor samples were analyzed with the RECAP test, which requires ex vivo irradiated fresh tumor tissue on the premise that the HRD status as determined by the RECAP test faithfully represented the functional HR status.
Results
The RAD51-FFPE test identified 23 (37%) of the tumors as HRD, including three tumors with pathogenic variants in
BRCA1
/
2
. The RAD51-FFPE test showed a sensitivity of 88% and a specificity of 76% in determining the HR-class as defined by the RECAP test.
Conclusion
Given its high sensitivity and compatibility with FFPE samples, the RAD51-FFPE test holds great potential to enrich for HRD tumors, including those associated with
BRCA
-deficiency. This potential extends to situations where DNA-based testing may be challenging or not easily accessible in routine clinical practice. This is particularly important considering the potential implications for treatment decisions and patient stratification. |
doi_str_mv | 10.1007/s10549-023-07102-y |
format | Article |
fullrecord | <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10564840</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A768477534</galeid><sourcerecordid>A768477534</sourcerecordid><originalsourceid>FETCH-LOGICAL-c501t-cd85d1d3703851e0aca2377d3dddbc2d96f155ce3922405f463f3079a77c40e63</originalsourceid><addsrcrecordid>eNp9kl-L1DAUxYso7rj6BXwqCOJL15ukadonGfaPKywoi774EtLkZiZLm4xJuzDf3tRZXEdE8hDI_Z2T3JtTFK8JnBEA8T4R4HVXAWUVCAK02j8pVoQLVglKxNNiBaQRVdNCc1K8SOkOADoB3fPihAlBOeH1qvj-BaMNcVReYxlsqcrb9QUnVa8SmtLOXk8ueDWU17cX5YRpKoMvdyoqa52vcOzRmAz2EVWu6cUmlpNLacaXxTOrhoSvHvbT4tvV5dfz6-rm88dP5-ubSnMgU6VNyw0xTABrOUFQWtH8PsOMMb2mpmss4Vwj6yitgdu6YZaB6JQQugZs2Gnx4eC7m_sRjUY_RTXIXXSjinsZlJPHFe-2chPuZR5fU7c1ZId3Dw4x_Jhzk3J0SeMwKI9hTpK2TSN4V7cio2_-Qu_CHPOAFkpwCpwJ_kht1IDSeRvyxXoxlWvRtLXITJ2ps39QeRkcnQ4ercvnR4K3fwi2qIZpm8IwL1-UjkF6AHUMKUW0v6dBQC7ZkYfsyJwd-Ss7cp9F7CBKGfYbjI-t_Uf1ExFLwvg</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2875205375</pqid></control><display><type>article</type><title>Performance of a RAD51-based functional HRD test on paraffin-embedded breast cancer tissue</title><source>SpringerNature Journals</source><creator>van Wijk, Lise M. ; Vermeulen, Sylvia ; ter Haar, Natalja T. ; Kramer, Claire J. H. ; Terlouw, Diantha ; Vrieling, Harry ; Cohen, Danielle ; Vreeswijk, Maaike P. G.</creator><creatorcontrib>van Wijk, Lise M. ; Vermeulen, Sylvia ; ter Haar, Natalja T. ; Kramer, Claire J. H. ; Terlouw, Diantha ; Vrieling, Harry ; Cohen, Danielle ; Vreeswijk, Maaike P. G.</creatorcontrib><description>Purpose
BRCA-
deficient breast cancers (BC) are highly sensitive to platinum-based chemotherapy and PARP inhibitors due to their deficiency in the homologous recombination (HR) pathway. However, HR deficiency (HRD) extends beyond
BRCA
-associated BC, highlighting the need for a sensitive method to enrich for HRD tumors in an alternative way. A promising approach is the use of functional HRD tests which evaluate the HR capability of tumor cells by measuring RAD51 protein accumulation at DNA damage sites. This study aims to evaluate the performance of a functional RAD51-based HRD test for the identification of HRD BC.
Methods
The functional HR status of 63 diagnostic formalin-fixed paraffin-embedded (FFPE) BC samples was determined by applying the RAD51-FFPE test. Samples were screened for the presence of (epi)genetic defects in HR and matching tumor samples were analyzed with the RECAP test, which requires ex vivo irradiated fresh tumor tissue on the premise that the HRD status as determined by the RECAP test faithfully represented the functional HR status.
Results
The RAD51-FFPE test identified 23 (37%) of the tumors as HRD, including three tumors with pathogenic variants in
BRCA1
/
2
. The RAD51-FFPE test showed a sensitivity of 88% and a specificity of 76% in determining the HR-class as defined by the RECAP test.
Conclusion
Given its high sensitivity and compatibility with FFPE samples, the RAD51-FFPE test holds great potential to enrich for HRD tumors, including those associated with
BRCA
-deficiency. This potential extends to situations where DNA-based testing may be challenging or not easily accessible in routine clinical practice. This is particularly important considering the potential implications for treatment decisions and patient stratification.</description><identifier>ISSN: 0167-6806</identifier><identifier>EISSN: 1573-7217</identifier><identifier>DOI: 10.1007/s10549-023-07102-y</identifier><identifier>PMID: 37725154</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>BRCA1 protein ; Breast cancer ; Cancer ; Cancer research ; Chemotherapy ; DNA damage ; Homologous recombination ; Medicine ; Medicine & Public Health ; Oncology ; Original Laboratory Investigation ; Paraffin ; Performance evaluation ; Rad51 protein ; Sensitivity analysis ; Tumor cells ; Tumors</subject><ispartof>Breast cancer research and treatment, 2023-12, Vol.202 (3), p.607-616</ispartof><rights>The Author(s) 2023</rights><rights>COPYRIGHT 2023 Springer</rights><rights>The Author(s) 2023. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c501t-cd85d1d3703851e0aca2377d3dddbc2d96f155ce3922405f463f3079a77c40e63</cites><orcidid>0000-0002-3004-5002 ; 0000-0003-4068-9271 ; 0000-0002-8090-8806 ; 0000-0001-7399-6804 ; 0000-0002-9866-9508 ; 0000-0001-6004-9402 ; 0000-0002-3034-2664</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10549-023-07102-y$$EPDF$$P50$$Gspringer$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10549-023-07102-y$$EHTML$$P50$$Gspringer$$Hfree_for_read</linktohtml><link.rule.ids>230,314,780,784,885,27924,27925,41488,42557,51319</link.rule.ids></links><search><creatorcontrib>van Wijk, Lise M.</creatorcontrib><creatorcontrib>Vermeulen, Sylvia</creatorcontrib><creatorcontrib>ter Haar, Natalja T.</creatorcontrib><creatorcontrib>Kramer, Claire J. H.</creatorcontrib><creatorcontrib>Terlouw, Diantha</creatorcontrib><creatorcontrib>Vrieling, Harry</creatorcontrib><creatorcontrib>Cohen, Danielle</creatorcontrib><creatorcontrib>Vreeswijk, Maaike P. G.</creatorcontrib><title>Performance of a RAD51-based functional HRD test on paraffin-embedded breast cancer tissue</title><title>Breast cancer research and treatment</title><addtitle>Breast Cancer Res Treat</addtitle><description>Purpose
BRCA-
deficient breast cancers (BC) are highly sensitive to platinum-based chemotherapy and PARP inhibitors due to their deficiency in the homologous recombination (HR) pathway. However, HR deficiency (HRD) extends beyond
BRCA
-associated BC, highlighting the need for a sensitive method to enrich for HRD tumors in an alternative way. A promising approach is the use of functional HRD tests which evaluate the HR capability of tumor cells by measuring RAD51 protein accumulation at DNA damage sites. This study aims to evaluate the performance of a functional RAD51-based HRD test for the identification of HRD BC.
Methods
The functional HR status of 63 diagnostic formalin-fixed paraffin-embedded (FFPE) BC samples was determined by applying the RAD51-FFPE test. Samples were screened for the presence of (epi)genetic defects in HR and matching tumor samples were analyzed with the RECAP test, which requires ex vivo irradiated fresh tumor tissue on the premise that the HRD status as determined by the RECAP test faithfully represented the functional HR status.
Results
The RAD51-FFPE test identified 23 (37%) of the tumors as HRD, including three tumors with pathogenic variants in
BRCA1
/
2
. The RAD51-FFPE test showed a sensitivity of 88% and a specificity of 76% in determining the HR-class as defined by the RECAP test.
Conclusion
Given its high sensitivity and compatibility with FFPE samples, the RAD51-FFPE test holds great potential to enrich for HRD tumors, including those associated with
BRCA
-deficiency. This potential extends to situations where DNA-based testing may be challenging or not easily accessible in routine clinical practice. This is particularly important considering the potential implications for treatment decisions and patient stratification.</description><subject>BRCA1 protein</subject><subject>Breast cancer</subject><subject>Cancer</subject><subject>Cancer research</subject><subject>Chemotherapy</subject><subject>DNA damage</subject><subject>Homologous recombination</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Oncology</subject><subject>Original Laboratory Investigation</subject><subject>Paraffin</subject><subject>Performance evaluation</subject><subject>Rad51 protein</subject><subject>Sensitivity analysis</subject><subject>Tumor cells</subject><subject>Tumors</subject><issn>0167-6806</issn><issn>1573-7217</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>C6C</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kl-L1DAUxYso7rj6BXwqCOJL15ukadonGfaPKywoi774EtLkZiZLm4xJuzDf3tRZXEdE8hDI_Z2T3JtTFK8JnBEA8T4R4HVXAWUVCAK02j8pVoQLVglKxNNiBaQRVdNCc1K8SOkOADoB3fPihAlBOeH1qvj-BaMNcVReYxlsqcrb9QUnVa8SmtLOXk8ueDWU17cX5YRpKoMvdyoqa52vcOzRmAz2EVWu6cUmlpNLacaXxTOrhoSvHvbT4tvV5dfz6-rm88dP5-ubSnMgU6VNyw0xTABrOUFQWtH8PsOMMb2mpmss4Vwj6yitgdu6YZaB6JQQugZs2Gnx4eC7m_sRjUY_RTXIXXSjinsZlJPHFe-2chPuZR5fU7c1ZId3Dw4x_Jhzk3J0SeMwKI9hTpK2TSN4V7cio2_-Qu_CHPOAFkpwCpwJ_kht1IDSeRvyxXoxlWvRtLXITJ2ps39QeRkcnQ4ercvnR4K3fwi2qIZpm8IwL1-UjkF6AHUMKUW0v6dBQC7ZkYfsyJwd-Ss7cp9F7CBKGfYbjI-t_Uf1ExFLwvg</recordid><startdate>20231201</startdate><enddate>20231201</enddate><creator>van Wijk, Lise M.</creator><creator>Vermeulen, Sylvia</creator><creator>ter Haar, Natalja T.</creator><creator>Kramer, Claire J. H.</creator><creator>Terlouw, Diantha</creator><creator>Vrieling, Harry</creator><creator>Cohen, Danielle</creator><creator>Vreeswijk, Maaike P. 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H. ; Terlouw, Diantha ; Vrieling, Harry ; Cohen, Danielle ; Vreeswijk, Maaike P. G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c501t-cd85d1d3703851e0aca2377d3dddbc2d96f155ce3922405f463f3079a77c40e63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>BRCA1 protein</topic><topic>Breast cancer</topic><topic>Cancer</topic><topic>Cancer research</topic><topic>Chemotherapy</topic><topic>DNA damage</topic><topic>Homologous recombination</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Oncology</topic><topic>Original Laboratory Investigation</topic><topic>Paraffin</topic><topic>Performance evaluation</topic><topic>Rad51 protein</topic><topic>Sensitivity analysis</topic><topic>Tumor cells</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>van Wijk, Lise M.</creatorcontrib><creatorcontrib>Vermeulen, Sylvia</creatorcontrib><creatorcontrib>ter Haar, Natalja T.</creatorcontrib><creatorcontrib>Kramer, Claire J. H.</creatorcontrib><creatorcontrib>Terlouw, Diantha</creatorcontrib><creatorcontrib>Vrieling, Harry</creatorcontrib><creatorcontrib>Cohen, Danielle</creatorcontrib><creatorcontrib>Vreeswijk, Maaike P. G.</creatorcontrib><collection>Springer Nature OA Free Journals</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Oncogenes and Growth Factors Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Consumer Health Database (Alumni Edition)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Consumer Health Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Breast cancer research and treatment</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>van Wijk, Lise M.</au><au>Vermeulen, Sylvia</au><au>ter Haar, Natalja T.</au><au>Kramer, Claire J. H.</au><au>Terlouw, Diantha</au><au>Vrieling, Harry</au><au>Cohen, Danielle</au><au>Vreeswijk, Maaike P. G.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Performance of a RAD51-based functional HRD test on paraffin-embedded breast cancer tissue</atitle><jtitle>Breast cancer research and treatment</jtitle><stitle>Breast Cancer Res Treat</stitle><date>2023-12-01</date><risdate>2023</risdate><volume>202</volume><issue>3</issue><spage>607</spage><epage>616</epage><pages>607-616</pages><issn>0167-6806</issn><eissn>1573-7217</eissn><abstract>Purpose
BRCA-
deficient breast cancers (BC) are highly sensitive to platinum-based chemotherapy and PARP inhibitors due to their deficiency in the homologous recombination (HR) pathway. However, HR deficiency (HRD) extends beyond
BRCA
-associated BC, highlighting the need for a sensitive method to enrich for HRD tumors in an alternative way. A promising approach is the use of functional HRD tests which evaluate the HR capability of tumor cells by measuring RAD51 protein accumulation at DNA damage sites. This study aims to evaluate the performance of a functional RAD51-based HRD test for the identification of HRD BC.
Methods
The functional HR status of 63 diagnostic formalin-fixed paraffin-embedded (FFPE) BC samples was determined by applying the RAD51-FFPE test. Samples were screened for the presence of (epi)genetic defects in HR and matching tumor samples were analyzed with the RECAP test, which requires ex vivo irradiated fresh tumor tissue on the premise that the HRD status as determined by the RECAP test faithfully represented the functional HR status.
Results
The RAD51-FFPE test identified 23 (37%) of the tumors as HRD, including three tumors with pathogenic variants in
BRCA1
/
2
. The RAD51-FFPE test showed a sensitivity of 88% and a specificity of 76% in determining the HR-class as defined by the RECAP test.
Conclusion
Given its high sensitivity and compatibility with FFPE samples, the RAD51-FFPE test holds great potential to enrich for HRD tumors, including those associated with
BRCA
-deficiency. This potential extends to situations where DNA-based testing may be challenging or not easily accessible in routine clinical practice. This is particularly important considering the potential implications for treatment decisions and patient stratification.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>37725154</pmid><doi>10.1007/s10549-023-07102-y</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-3004-5002</orcidid><orcidid>https://orcid.org/0000-0003-4068-9271</orcidid><orcidid>https://orcid.org/0000-0002-8090-8806</orcidid><orcidid>https://orcid.org/0000-0001-7399-6804</orcidid><orcidid>https://orcid.org/0000-0002-9866-9508</orcidid><orcidid>https://orcid.org/0000-0001-6004-9402</orcidid><orcidid>https://orcid.org/0000-0002-3034-2664</orcidid><oa>free_for_read</oa></addata></record> |
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source | SpringerNature Journals |
subjects | BRCA1 protein Breast cancer Cancer Cancer research Chemotherapy DNA damage Homologous recombination Medicine Medicine & Public Health Oncology Original Laboratory Investigation Paraffin Performance evaluation Rad51 protein Sensitivity analysis Tumor cells Tumors |
title | Performance of a RAD51-based functional HRD test on paraffin-embedded breast cancer tissue |
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