Evolutionary analysis and expression profiling of the HSP70 gene family in response to abiotic stresses in tomato (Solanum lycopersicum)
Heat shock protein 70 (HSP70) genes play essential roles in guarding plants against abiotic stresses, including heat, drought, and salt. In this study, the SlHSP70 gene family in tomatoes has been characterized using bioinformatic tools. 25 putative SlHSP70 genes in the tomato genome were found and...
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| Veröffentlicht in: | Science progress (1916) 2023-01, Vol.106 (1), p.368504221148843-368504221148843 |
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| container_title | Science progress (1916) |
| container_volume | 106 |
| creator | Vu, Nam Tuan Nguyen, Ngoc Bich Thi Ha, Hanh Hong Nguyen, Linh Nhat Luu, Ly Han Dao, Ha Quang Vu, Trinh Thi Huynh, Hue Thu Thi Le, Hien Thu Thi |
| description | Heat shock protein 70 (HSP70) genes play essential roles in guarding plants against abiotic stresses, including heat, drought, and salt. In this study, the SlHSP70 gene family in tomatoes has been characterized using bioinformatic tools. 25 putative SlHSP70 genes in the tomato genome were found and classified into five subfamilies, with multi-subcellular localizations. Twelve pairs of gene duplications were identified, and segmental events were determined as the main factor for the gene family expansion. Based on public RNA-seq data, gene expression analysis identified the majority of genes expressed in the examined organelles. Further RNA-seq analysis and then quantitative RT-PCR validation showed that many SlHSP70 members are responsible for cellular feedback to heat, drought, and salt treatments, in which, at least five genes might be potential key players in the stress response. Our results provided a thorough overview of the SlHSP70 gene family in the tomato, which may be useful for the evolutionary and functional analysis of SlHSP70 under abiotic stress conditions. |
| doi_str_mv | 10.1177/00368504221148843 |
| format | Article |
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In this study, the SlHSP70 gene family in tomatoes has been characterized using bioinformatic tools. 25 putative SlHSP70 genes in the tomato genome were found and classified into five subfamilies, with multi-subcellular localizations. Twelve pairs of gene duplications were identified, and segmental events were determined as the main factor for the gene family expansion. Based on public RNA-seq data, gene expression analysis identified the majority of genes expressed in the examined organelles. Further RNA-seq analysis and then quantitative RT-PCR validation showed that many SlHSP70 members are responsible for cellular feedback to heat, drought, and salt treatments, in which, at least five genes might be potential key players in the stress response. Our results provided a thorough overview of the SlHSP70 gene family in the tomato, which may be useful for the evolutionary and functional analysis of SlHSP70 under abiotic stress conditions.</description><identifier>ISSN: 0036-8504</identifier><identifier>EISSN: 2047-7163</identifier><identifier>DOI: 10.1177/00368504221148843</identifier><identifier>PMID: 36650980</identifier><language>eng</language><publisher>London, England: SAGE Publications</publisher><subject>Abiotic stress ; Drought ; Functional analysis ; Gene expression ; Gene Expression Profiling ; Genes ; Genomes ; Heat shock proteins ; HSP70 Heat-Shock Proteins - genetics ; Hsp70 protein ; Organelles ; Original Manuscript ; Phylogeny ; Ribonucleic acid ; RNA ; Solanum lycopersicum ; Solanum lycopersicum - genetics ; Stress, Physiological - genetics ; Stresses ; Tomatoes</subject><ispartof>Science progress (1916), 2023-01, Vol.106 (1), p.368504221148843-368504221148843</ispartof><rights>The Author(s) 2023</rights><rights>2023. This article is distributed under the terms of the Creative Commons Attribution-NonCommercial 4.0 License ( https://creativecommons.org/licenses/by-nc/4.0/ ) which permits non-commercial use, reproduction and distribution of the work without further permission provided the original work is attributed as specified on the SAGE and Open Access page ( https://us.sagepub.com/en-us/nam/open-access-at-sage ). 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In this study, the SlHSP70 gene family in tomatoes has been characterized using bioinformatic tools. 25 putative SlHSP70 genes in the tomato genome were found and classified into five subfamilies, with multi-subcellular localizations. Twelve pairs of gene duplications were identified, and segmental events were determined as the main factor for the gene family expansion. Based on public RNA-seq data, gene expression analysis identified the majority of genes expressed in the examined organelles. Further RNA-seq analysis and then quantitative RT-PCR validation showed that many SlHSP70 members are responsible for cellular feedback to heat, drought, and salt treatments, in which, at least five genes might be potential key players in the stress response. Our results provided a thorough overview of the SlHSP70 gene family in the tomato, which may be useful for the evolutionary and functional analysis of SlHSP70 under abiotic stress conditions.</description><subject>Abiotic stress</subject><subject>Drought</subject><subject>Functional analysis</subject><subject>Gene expression</subject><subject>Gene Expression Profiling</subject><subject>Genes</subject><subject>Genomes</subject><subject>Heat shock proteins</subject><subject>HSP70 Heat-Shock Proteins - genetics</subject><subject>Hsp70 protein</subject><subject>Organelles</subject><subject>Original Manuscript</subject><subject>Phylogeny</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Solanum lycopersicum</subject><subject>Solanum lycopersicum - genetics</subject><subject>Stress, Physiological - genetics</subject><subject>Stresses</subject><subject>Tomatoes</subject><issn>0036-8504</issn><issn>2047-7163</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>AFRWT</sourceid><sourceid>EIF</sourceid><recordid>eNp1kc9qFTEYxYMo9lp9ADcScFMX0-bfJDMrkVKtULBQXYdMkrlNySRjkineN_CxzXBrbRVXCZzfOcl3PgBeY3SMsRAnCFHetYgRgjHrOkafgA1BTDQCc_oUbFa9WYED8CLnG4Rwi3n3HBxQzlvUd2gDfp7dRr8UF4NKO6iC8rvscr0YaH_MyeZcJTinODrvwhbGEZZrC8-vLgWCWxssHNXk_A66ACs9x5AtLBGqwcXiNMxlzbB51UucVJWOrqJXYZmg3-k425SdXqZ3L8GzUflsX92dh-Dbx7Ovp-fNxZdPn08_XDSacVGasR1whw2mA6V47Enfa4apIUzVBpji1HTKsJ4OgnI0EGNbzozhXCPSa11Nh-D9PndehskabUNJyss5uak2IKNy8rES3LXcxluJEW27lvOacHSXkOL3xeYiJ5e19XUoG5csieBcEMT7tqJv_0Jv4pJqySvVE4YY5qhSeE_pFHNOdrz_DUZyXbT8Z9HV8-bhGPeO35utwPEeyGpr_zz7_8RfFBCyUQ</recordid><startdate>20230101</startdate><enddate>20230101</enddate><creator>Vu, Nam Tuan</creator><creator>Nguyen, Ngoc Bich Thi</creator><creator>Ha, Hanh Hong</creator><creator>Nguyen, Linh Nhat</creator><creator>Luu, Ly Han</creator><creator>Dao, Ha Quang</creator><creator>Vu, Trinh Thi</creator><creator>Huynh, Hue Thu Thi</creator><creator>Le, Hien Thu Thi</creator><general>SAGE Publications</general><general>Sage Publications Ltd</general><scope>AFRWT</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>F28</scope><scope>FR3</scope><scope>JQ2</scope><scope>K9.</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-1854-5661</orcidid></search><sort><creationdate>20230101</creationdate><title>Evolutionary analysis and expression profiling of the HSP70 gene family in response to abiotic stresses in tomato (Solanum lycopersicum)</title><author>Vu, Nam Tuan ; Nguyen, Ngoc Bich Thi ; Ha, Hanh Hong ; Nguyen, Linh Nhat ; Luu, Ly Han ; Dao, Ha Quang ; Vu, Trinh Thi ; Huynh, Hue Thu Thi ; Le, Hien Thu Thi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c467t-f5b181d13b331f9299c413d24a1484a63d8ad493b7360b2de564dd66c029ccb33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Abiotic stress</topic><topic>Drought</topic><topic>Functional analysis</topic><topic>Gene expression</topic><topic>Gene Expression Profiling</topic><topic>Genes</topic><topic>Genomes</topic><topic>Heat shock proteins</topic><topic>HSP70 Heat-Shock Proteins - genetics</topic><topic>Hsp70 protein</topic><topic>Organelles</topic><topic>Original Manuscript</topic><topic>Phylogeny</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Solanum lycopersicum</topic><topic>Solanum lycopersicum - genetics</topic><topic>Stress, Physiological - genetics</topic><topic>Stresses</topic><topic>Tomatoes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Vu, Nam Tuan</creatorcontrib><creatorcontrib>Nguyen, Ngoc Bich Thi</creatorcontrib><creatorcontrib>Ha, Hanh Hong</creatorcontrib><creatorcontrib>Nguyen, Linh Nhat</creatorcontrib><creatorcontrib>Luu, Ly Han</creatorcontrib><creatorcontrib>Dao, Ha Quang</creatorcontrib><creatorcontrib>Vu, Trinh Thi</creatorcontrib><creatorcontrib>Huynh, Hue Thu Thi</creatorcontrib><creatorcontrib>Le, Hien Thu Thi</creatorcontrib><collection>Sage Journals GOLD Open Access 2024</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Science progress (1916)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Vu, Nam Tuan</au><au>Nguyen, Ngoc Bich Thi</au><au>Ha, Hanh Hong</au><au>Nguyen, Linh Nhat</au><au>Luu, Ly Han</au><au>Dao, Ha Quang</au><au>Vu, Trinh Thi</au><au>Huynh, Hue Thu Thi</au><au>Le, Hien Thu Thi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evolutionary analysis and expression profiling of the HSP70 gene family in response to abiotic stresses in tomato (Solanum lycopersicum)</atitle><jtitle>Science progress (1916)</jtitle><addtitle>Sci Prog</addtitle><date>2023-01-01</date><risdate>2023</risdate><volume>106</volume><issue>1</issue><spage>368504221148843</spage><epage>368504221148843</epage><pages>368504221148843-368504221148843</pages><issn>0036-8504</issn><eissn>2047-7163</eissn><abstract>Heat shock protein 70 (HSP70) genes play essential roles in guarding plants against abiotic stresses, including heat, drought, and salt. In this study, the SlHSP70 gene family in tomatoes has been characterized using bioinformatic tools. 25 putative SlHSP70 genes in the tomato genome were found and classified into five subfamilies, with multi-subcellular localizations. Twelve pairs of gene duplications were identified, and segmental events were determined as the main factor for the gene family expansion. Based on public RNA-seq data, gene expression analysis identified the majority of genes expressed in the examined organelles. Further RNA-seq analysis and then quantitative RT-PCR validation showed that many SlHSP70 members are responsible for cellular feedback to heat, drought, and salt treatments, in which, at least five genes might be potential key players in the stress response. Our results provided a thorough overview of the SlHSP70 gene family in the tomato, which may be useful for the evolutionary and functional analysis of SlHSP70 under abiotic stress conditions.</abstract><cop>London, England</cop><pub>SAGE Publications</pub><pmid>36650980</pmid><doi>10.1177/00368504221148843</doi><orcidid>https://orcid.org/0000-0002-1854-5661</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Abiotic stress Drought Functional analysis Gene expression Gene Expression Profiling Genes Genomes Heat shock proteins HSP70 Heat-Shock Proteins - genetics Hsp70 protein Organelles Original Manuscript Phylogeny Ribonucleic acid RNA Solanum lycopersicum Solanum lycopersicum - genetics Stress, Physiological - genetics Stresses Tomatoes |
| title | Evolutionary analysis and expression profiling of the HSP70 gene family in response to abiotic stresses in tomato (Solanum lycopersicum) |
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