Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa
In this study, a total of 177 members were identified in , located on 21 chromosomes. Phylogenetic analysis showed that AsNAC proteins could be divided into seven subfamilies (I-VII), and that proteins in the same subfamily have similar protein motifs. Gene structure analysis found that introns rang...
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| Veröffentlicht in: | Genes 2023-05, Vol.14 (6), p.1186 |
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| creator | Ling, Lei Li, Mingjing Chen, Naiyu Xie, Xinying Han, Zihui Ren, Guoling Yin, Yajie Jiang, Huixin |
| description | In this study, a total of 177
members were identified in
, located on 21 chromosomes. Phylogenetic analysis showed that AsNAC proteins could be divided into seven subfamilies (I-VII), and that proteins in the same subfamily have similar protein motifs. Gene structure analysis found that
introns ranged from 1 to 17. Cis-element analysis of the promoter indicated that the gene family may have stress-related elements and growth regulation elements. Through qRT-PCR experiments, we speculated that
genes can respond to abiotic stresses such as cold, freezing, salt, and saline alkali. This study provides a theoretical basis for further exploring the function of the
gene family in |
| doi_str_mv | 10.3390/genes14061186 |
| format | Article |
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members were identified in
, located on 21 chromosomes. Phylogenetic analysis showed that AsNAC proteins could be divided into seven subfamilies (I-VII), and that proteins in the same subfamily have similar protein motifs. Gene structure analysis found that
introns ranged from 1 to 17. Cis-element analysis of the promoter indicated that the gene family may have stress-related elements and growth regulation elements. Through qRT-PCR experiments, we speculated that
genes can respond to abiotic stresses such as cold, freezing, salt, and saline alkali. This study provides a theoretical basis for further exploring the function of the
gene family in</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes14061186</identifier><identifier>PMID: 37372366</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Abiotic stress ; Abscisic acid ; Avena - genetics ; Avena sativa ; Chromosomes ; Drought ; Freezing ; Gene expression ; Genomes ; Introns ; Introns - genetics ; Phylogenetics ; Phylogeny ; Plant growth ; Promoter Regions, Genetic ; Protein structure ; Proteins ; Rice ; Signal transduction ; Stress, Physiological - genetics ; Transcription factors</subject><ispartof>Genes, 2023-05, Vol.14 (6), p.1186</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c416t-b79aefc1e96279dab7e3996f108abff4d79c3aab7d97f0793b4ac9d9813f65e43</citedby><cites>FETCH-LOGICAL-c416t-b79aefc1e96279dab7e3996f108abff4d79c3aab7d97f0793b4ac9d9813f65e43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10298501/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10298501/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37372366$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ling, Lei</creatorcontrib><creatorcontrib>Li, Mingjing</creatorcontrib><creatorcontrib>Chen, Naiyu</creatorcontrib><creatorcontrib>Xie, Xinying</creatorcontrib><creatorcontrib>Han, Zihui</creatorcontrib><creatorcontrib>Ren, Guoling</creatorcontrib><creatorcontrib>Yin, Yajie</creatorcontrib><creatorcontrib>Jiang, Huixin</creatorcontrib><title>Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa</title><title>Genes</title><addtitle>Genes (Basel)</addtitle><description>In this study, a total of 177
members were identified in
, located on 21 chromosomes. Phylogenetic analysis showed that AsNAC proteins could be divided into seven subfamilies (I-VII), and that proteins in the same subfamily have similar protein motifs. Gene structure analysis found that
introns ranged from 1 to 17. Cis-element analysis of the promoter indicated that the gene family may have stress-related elements and growth regulation elements. Through qRT-PCR experiments, we speculated that
genes can respond to abiotic stresses such as cold, freezing, salt, and saline alkali. This study provides a theoretical basis for further exploring the function of the
gene family in</description><subject>Abiotic stress</subject><subject>Abscisic acid</subject><subject>Avena - genetics</subject><subject>Avena sativa</subject><subject>Chromosomes</subject><subject>Drought</subject><subject>Freezing</subject><subject>Gene expression</subject><subject>Genomes</subject><subject>Introns</subject><subject>Introns - genetics</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant growth</subject><subject>Promoter Regions, Genetic</subject><subject>Protein structure</subject><subject>Proteins</subject><subject>Rice</subject><subject>Signal transduction</subject><subject>Stress, Physiological - genetics</subject><subject>Transcription factors</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNpdkUtPJCEURsnEyWjU5WwNiZvZlANFNRQr0-n4Ssy4GM0sCQUXxVRBD1R17H8vFR9R2UAuJwfu_RD6SckJY5L8vocAmTaEU9ryb2ivJoJVTVMvdj6cd9Fhzo-krIbUhCx-oF0mmKgZ53uov4AQB6j-eQv4ykIYvfNGjz4GHB3-s1zhQgA-14Pvt1gHi8-e1glynoll0P02-4ynYCHhZefj6A3-O84AZOwLsoGgcS7GjT5A353uMxy-7vvo7vzsdnVZXd9cXK2W15VpKB-rTkgNzlCQvBbS6k4Ak5I7SlrdOddYIQ3TpWylcERI1jXaSCtbyhxfQMP20emLdz11A1hTukq6V-vkB522KmqvPt8E_6Du40ZRUst2QWgx_Ho1pPh_gjyqwWcDfa8DxCmrumWEc0HJ_NjxF_QxTqkMZqaKjrSC1YWqXiiTYs4J3PtvKFFzlupTloU_-tjCO_2WHHsGfa6bvA</recordid><startdate>20230529</startdate><enddate>20230529</enddate><creator>Ling, Lei</creator><creator>Li, Mingjing</creator><creator>Chen, Naiyu</creator><creator>Xie, Xinying</creator><creator>Han, Zihui</creator><creator>Ren, Guoling</creator><creator>Yin, Yajie</creator><creator>Jiang, Huixin</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20230529</creationdate><title>Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa</title><author>Ling, Lei ; Li, Mingjing ; Chen, Naiyu ; Xie, Xinying ; Han, Zihui ; Ren, Guoling ; Yin, Yajie ; Jiang, Huixin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c416t-b79aefc1e96279dab7e3996f108abff4d79c3aab7d97f0793b4ac9d9813f65e43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Abiotic stress</topic><topic>Abscisic acid</topic><topic>Avena - genetics</topic><topic>Avena sativa</topic><topic>Chromosomes</topic><topic>Drought</topic><topic>Freezing</topic><topic>Gene expression</topic><topic>Genomes</topic><topic>Introns</topic><topic>Introns - genetics</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant growth</topic><topic>Promoter Regions, Genetic</topic><topic>Protein structure</topic><topic>Proteins</topic><topic>Rice</topic><topic>Signal transduction</topic><topic>Stress, Physiological - genetics</topic><topic>Transcription factors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ling, Lei</creatorcontrib><creatorcontrib>Li, Mingjing</creatorcontrib><creatorcontrib>Chen, Naiyu</creatorcontrib><creatorcontrib>Xie, Xinying</creatorcontrib><creatorcontrib>Han, Zihui</creatorcontrib><creatorcontrib>Ren, Guoling</creatorcontrib><creatorcontrib>Yin, Yajie</creatorcontrib><creatorcontrib>Jiang, Huixin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ling, Lei</au><au>Li, Mingjing</au><au>Chen, Naiyu</au><au>Xie, Xinying</au><au>Han, Zihui</au><au>Ren, Guoling</au><au>Yin, Yajie</au><au>Jiang, Huixin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa</atitle><jtitle>Genes</jtitle><addtitle>Genes (Basel)</addtitle><date>2023-05-29</date><risdate>2023</risdate><volume>14</volume><issue>6</issue><spage>1186</spage><pages>1186-</pages><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>In this study, a total of 177
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, located on 21 chromosomes. Phylogenetic analysis showed that AsNAC proteins could be divided into seven subfamilies (I-VII), and that proteins in the same subfamily have similar protein motifs. Gene structure analysis found that
introns ranged from 1 to 17. Cis-element analysis of the promoter indicated that the gene family may have stress-related elements and growth regulation elements. Through qRT-PCR experiments, we speculated that
genes can respond to abiotic stresses such as cold, freezing, salt, and saline alkali. This study provides a theoretical basis for further exploring the function of the
gene family in</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>37372366</pmid><doi>10.3390/genes14061186</doi><oa>free_for_read</oa></addata></record> |
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| subjects | Abiotic stress Abscisic acid Avena - genetics Avena sativa Chromosomes Drought Freezing Gene expression Genomes Introns Introns - genetics Phylogenetics Phylogeny Plant growth Promoter Regions, Genetic Protein structure Proteins Rice Signal transduction Stress, Physiological - genetics Transcription factors |
| title | Genome-Wide Identification of NAC Gene Family and Expression Analysis under Abiotic Stresses in Avena sativa |
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