Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment
Background Low-cost sensor networks for monitoring air pollution are an effective tool for expanding spatial resolution beyond the capabilities of existing state and federal reference monitoring stations. However, low-cost sensor data commonly exhibit non-linear biases with respect to environmental...
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creator | Patton, Andrew Datta, Abhirup Zamora, Misti Levy Buehler, Colby Xiong, Fulizi Gentner, Drew R. Koehler, Kirsten |
description | Background
Low-cost sensor networks for monitoring air pollution are an effective tool for expanding spatial resolution beyond the capabilities of existing state and federal reference monitoring stations. However, low-cost sensor data commonly exhibit non-linear biases with respect to environmental conditions that cannot be captured by linear models, therefore requiring extensive lab calibration. Further, these calibration models traditionally produce point estimates or uniform variance predictions which limits their downstream in exposure assessment.
Objective
Build direct field-calibration models using probabilistic gradient boosted decision trees (GBDT) that eliminate the need for resource-intensive lab calibration and that can be used to conduct probabilistic exposure assessments on the neighborhood level.
Methods
Using data from Plantower A003 particulate matter (PM) sensors deployed in Baltimore, MD from November 2018 through November 2019, a fully probabilistic NGBoost GBDT was trained on raw data from sensors co-located with a federal reference monitoring station and compared against linear regression trained on lab calibrated sensor data. The NGBoost predictions were then used in a Monte Carlo interpolation process to generate high spatial resolution probabilistic exposure gradients across Baltimore.
Results
We demonstrate that direct field-calibration of the raw PM
2.5
sensor data using a probabilistic GBDT has improved point and distribution accuracies compared to the linear model, particularly at reference measurements exceeding 25 μg/m
3
, and also on monitors not included in the training set.
Significance
We provide a framework for utilizing the GBDT to conduct probabilistic spatial assessments of human exposure with inverse distance weighting that predicts the probability of a given location exceeding an exposure threshold and provides percentiles of exposure. These probabilistic spatial exposure assessments can be scaled by time and space with minimal modifications. Here, we used the probabilistic exposure assessment methodology to create high quality spatial-temporal PM
2.5
maps on the neighborhood-scale in Baltimore, MD.
Impact statement
We demonstrate how the use of open-source probabilistic machine learning models for in-place sensor calibration outperforms traditional linear models and does not require an initial laboratory calibration step. Further, these probabilistic models can create uniquely probabilistic spatial exposure assessme |
doi_str_mv | 10.1038/s41370-022-00493-y |
format | Article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10292073</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2748043049</sourcerecordid><originalsourceid>FETCH-LOGICAL-c475t-96d6460bfe07c5ec92954568bf326a5f5c16343425d837baeb822bdf6fa49ff13</originalsourceid><addsrcrecordid>eNp9kc2O0zAUhS0EYobCC7BAllgH_J9khdCIP2kEG5DYWXZitx5c32AnHfoiPC9uOxTYsPK17rnfOdJB6CklLyjh3csiKG9JQxhrCBE9b_b30CWVsm-IEl_vn2dOL9CjUm6qSLSKPEQXXHHJSC8u0c-PkJoYkjMZTxmssSGGMocBDyYGm80cIGHwOMJtM0CZsUu7kCFtXZpNxCbUO4hxOeqKSwUyTm6-hfytYH_8hPXGQt4AjDi6nYu4TAfs7LYT5MpwPyYoS3bYlOJKOZAfowfexOKe3L0r9OXtm89X75vrT-8-XL2-bgbRyrnp1aiEItY70g7SDT3rpZCqs54zZaSXA1VccMHk2PHWGmc7xuzolTei957yFXp14k6L3bpxqNY1kZ5y2Jq812CC_neTwkavYacpYT0jLa-E53eEDN8XV2Z9A0tONbRmreiI4IdqVoidVEOGUrLzZwtK9KFMfSpT1zL1sUy9r0fP_g53PvndXhXwk6DUVVq7_Mf7P9hfdzWxrA</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2748043049</pqid></control><display><type>article</type><title>Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment</title><source>MEDLINE</source><source>Springer Nature - Complete Springer Journals</source><creator>Patton, Andrew ; Datta, Abhirup ; Zamora, Misti Levy ; Buehler, Colby ; Xiong, Fulizi ; Gentner, Drew R. ; Koehler, Kirsten</creator><creatorcontrib>Patton, Andrew ; Datta, Abhirup ; Zamora, Misti Levy ; Buehler, Colby ; Xiong, Fulizi ; Gentner, Drew R. ; Koehler, Kirsten</creatorcontrib><description>Background
Low-cost sensor networks for monitoring air pollution are an effective tool for expanding spatial resolution beyond the capabilities of existing state and federal reference monitoring stations. However, low-cost sensor data commonly exhibit non-linear biases with respect to environmental conditions that cannot be captured by linear models, therefore requiring extensive lab calibration. Further, these calibration models traditionally produce point estimates or uniform variance predictions which limits their downstream in exposure assessment.
Objective
Build direct field-calibration models using probabilistic gradient boosted decision trees (GBDT) that eliminate the need for resource-intensive lab calibration and that can be used to conduct probabilistic exposure assessments on the neighborhood level.
Methods
Using data from Plantower A003 particulate matter (PM) sensors deployed in Baltimore, MD from November 2018 through November 2019, a fully probabilistic NGBoost GBDT was trained on raw data from sensors co-located with a federal reference monitoring station and compared against linear regression trained on lab calibrated sensor data. The NGBoost predictions were then used in a Monte Carlo interpolation process to generate high spatial resolution probabilistic exposure gradients across Baltimore.
Results
We demonstrate that direct field-calibration of the raw PM
2.5
sensor data using a probabilistic GBDT has improved point and distribution accuracies compared to the linear model, particularly at reference measurements exceeding 25 μg/m
3
, and also on monitors not included in the training set.
Significance
We provide a framework for utilizing the GBDT to conduct probabilistic spatial assessments of human exposure with inverse distance weighting that predicts the probability of a given location exceeding an exposure threshold and provides percentiles of exposure. These probabilistic spatial exposure assessments can be scaled by time and space with minimal modifications. Here, we used the probabilistic exposure assessment methodology to create high quality spatial-temporal PM
2.5
maps on the neighborhood-scale in Baltimore, MD.
Impact statement
We demonstrate how the use of open-source probabilistic machine learning models for in-place sensor calibration outperforms traditional linear models and does not require an initial laboratory calibration step. Further, these probabilistic models can create uniquely probabilistic spatial exposure assessments following a Monte Carlo interpolation process.
Graphical abstract</description><identifier>ISSN: 1559-0631</identifier><identifier>EISSN: 1559-064X</identifier><identifier>DOI: 10.1038/s41370-022-00493-y</identifier><identifier>PMID: 36352094</identifier><language>eng</language><publisher>New York: Nature Publishing Group US</publisher><subject>Air monitoring ; Air Pollution ; Assessments ; Baltimore ; Calibration ; Decision trees ; Environmental conditions ; Epidemiology ; Exposure ; Humans ; Interpolation ; Low cost ; Machine learning ; Mathematical models ; Medicine ; Medicine & Public Health ; Neighborhoods ; Particulate emissions ; Particulate matter ; Pollution monitoring ; Probabilistic models ; Sensors ; Spatial discrimination ; Spatial resolution ; Statistical analysis</subject><ispartof>Journal of exposure science & environmental epidemiology, 2022-11, Vol.32 (6), p.908-916</ispartof><rights>The Author(s), under exclusive licence to Springer Nature America, Inc. 2022. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law.</rights><rights>2022. The Author(s), under exclusive licence to Springer Nature America, Inc.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c475t-96d6460bfe07c5ec92954568bf326a5f5c16343425d837baeb822bdf6fa49ff13</citedby><cites>FETCH-LOGICAL-c475t-96d6460bfe07c5ec92954568bf326a5f5c16343425d837baeb822bdf6fa49ff13</cites><orcidid>0000-0002-0637-6450</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1038/s41370-022-00493-y$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1038/s41370-022-00493-y$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>230,314,776,780,881,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36352094$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Patton, Andrew</creatorcontrib><creatorcontrib>Datta, Abhirup</creatorcontrib><creatorcontrib>Zamora, Misti Levy</creatorcontrib><creatorcontrib>Buehler, Colby</creatorcontrib><creatorcontrib>Xiong, Fulizi</creatorcontrib><creatorcontrib>Gentner, Drew R.</creatorcontrib><creatorcontrib>Koehler, Kirsten</creatorcontrib><title>Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment</title><title>Journal of exposure science & environmental epidemiology</title><addtitle>J Expo Sci Environ Epidemiol</addtitle><addtitle>J Expo Sci Environ Epidemiol</addtitle><description>Background
Low-cost sensor networks for monitoring air pollution are an effective tool for expanding spatial resolution beyond the capabilities of existing state and federal reference monitoring stations. However, low-cost sensor data commonly exhibit non-linear biases with respect to environmental conditions that cannot be captured by linear models, therefore requiring extensive lab calibration. Further, these calibration models traditionally produce point estimates or uniform variance predictions which limits their downstream in exposure assessment.
Objective
Build direct field-calibration models using probabilistic gradient boosted decision trees (GBDT) that eliminate the need for resource-intensive lab calibration and that can be used to conduct probabilistic exposure assessments on the neighborhood level.
Methods
Using data from Plantower A003 particulate matter (PM) sensors deployed in Baltimore, MD from November 2018 through November 2019, a fully probabilistic NGBoost GBDT was trained on raw data from sensors co-located with a federal reference monitoring station and compared against linear regression trained on lab calibrated sensor data. The NGBoost predictions were then used in a Monte Carlo interpolation process to generate high spatial resolution probabilistic exposure gradients across Baltimore.
Results
We demonstrate that direct field-calibration of the raw PM
2.5
sensor data using a probabilistic GBDT has improved point and distribution accuracies compared to the linear model, particularly at reference measurements exceeding 25 μg/m
3
, and also on monitors not included in the training set.
Significance
We provide a framework for utilizing the GBDT to conduct probabilistic spatial assessments of human exposure with inverse distance weighting that predicts the probability of a given location exceeding an exposure threshold and provides percentiles of exposure. These probabilistic spatial exposure assessments can be scaled by time and space with minimal modifications. Here, we used the probabilistic exposure assessment methodology to create high quality spatial-temporal PM
2.5
maps on the neighborhood-scale in Baltimore, MD.
Impact statement
We demonstrate how the use of open-source probabilistic machine learning models for in-place sensor calibration outperforms traditional linear models and does not require an initial laboratory calibration step. Further, these probabilistic models can create uniquely probabilistic spatial exposure assessments following a Monte Carlo interpolation process.
Graphical abstract</description><subject>Air monitoring</subject><subject>Air Pollution</subject><subject>Assessments</subject><subject>Baltimore</subject><subject>Calibration</subject><subject>Decision trees</subject><subject>Environmental conditions</subject><subject>Epidemiology</subject><subject>Exposure</subject><subject>Humans</subject><subject>Interpolation</subject><subject>Low cost</subject><subject>Machine learning</subject><subject>Mathematical models</subject><subject>Medicine</subject><subject>Medicine & Public Health</subject><subject>Neighborhoods</subject><subject>Particulate emissions</subject><subject>Particulate matter</subject><subject>Pollution monitoring</subject><subject>Probabilistic models</subject><subject>Sensors</subject><subject>Spatial discrimination</subject><subject>Spatial resolution</subject><subject>Statistical analysis</subject><issn>1559-0631</issn><issn>1559-064X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>BENPR</sourceid><recordid>eNp9kc2O0zAUhS0EYobCC7BAllgH_J9khdCIP2kEG5DYWXZitx5c32AnHfoiPC9uOxTYsPK17rnfOdJB6CklLyjh3csiKG9JQxhrCBE9b_b30CWVsm-IEl_vn2dOL9CjUm6qSLSKPEQXXHHJSC8u0c-PkJoYkjMZTxmssSGGMocBDyYGm80cIGHwOMJtM0CZsUu7kCFtXZpNxCbUO4hxOeqKSwUyTm6-hfytYH_8hPXGQt4AjDi6nYu4TAfs7LYT5MpwPyYoS3bYlOJKOZAfowfexOKe3L0r9OXtm89X75vrT-8-XL2-bgbRyrnp1aiEItY70g7SDT3rpZCqs54zZaSXA1VccMHk2PHWGmc7xuzolTei957yFXp14k6L3bpxqNY1kZ5y2Jq812CC_neTwkavYacpYT0jLa-E53eEDN8XV2Z9A0tONbRmreiI4IdqVoidVEOGUrLzZwtK9KFMfSpT1zL1sUy9r0fP_g53PvndXhXwk6DUVVq7_Mf7P9hfdzWxrA</recordid><startdate>20221101</startdate><enddate>20221101</enddate><creator>Patton, Andrew</creator><creator>Datta, Abhirup</creator><creator>Zamora, Misti Levy</creator><creator>Buehler, Colby</creator><creator>Xiong, Fulizi</creator><creator>Gentner, Drew R.</creator><creator>Koehler, Kirsten</creator><general>Nature Publishing Group US</general><general>Nature Publishing Group</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QO</scope><scope>7ST</scope><scope>7T2</scope><scope>7U7</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>L6V</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>M7S</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PTHSS</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>SOI</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-0637-6450</orcidid></search><sort><creationdate>20221101</creationdate><title>Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment</title><author>Patton, Andrew ; Datta, Abhirup ; Zamora, Misti Levy ; Buehler, Colby ; Xiong, Fulizi ; Gentner, Drew R. ; Koehler, Kirsten</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c475t-96d6460bfe07c5ec92954568bf326a5f5c16343425d837baeb822bdf6fa49ff13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Air monitoring</topic><topic>Air Pollution</topic><topic>Assessments</topic><topic>Baltimore</topic><topic>Calibration</topic><topic>Decision trees</topic><topic>Environmental conditions</topic><topic>Epidemiology</topic><topic>Exposure</topic><topic>Humans</topic><topic>Interpolation</topic><topic>Low cost</topic><topic>Machine learning</topic><topic>Mathematical models</topic><topic>Medicine</topic><topic>Medicine & Public Health</topic><topic>Neighborhoods</topic><topic>Particulate emissions</topic><topic>Particulate matter</topic><topic>Pollution monitoring</topic><topic>Probabilistic models</topic><topic>Sensors</topic><topic>Spatial discrimination</topic><topic>Spatial resolution</topic><topic>Statistical analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Patton, Andrew</creatorcontrib><creatorcontrib>Datta, Abhirup</creatorcontrib><creatorcontrib>Zamora, Misti Levy</creatorcontrib><creatorcontrib>Buehler, Colby</creatorcontrib><creatorcontrib>Xiong, Fulizi</creatorcontrib><creatorcontrib>Gentner, Drew R.</creatorcontrib><creatorcontrib>Koehler, Kirsten</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central 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titles)</collection><jtitle>Journal of exposure science & environmental epidemiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Patton, Andrew</au><au>Datta, Abhirup</au><au>Zamora, Misti Levy</au><au>Buehler, Colby</au><au>Xiong, Fulizi</au><au>Gentner, Drew R.</au><au>Koehler, Kirsten</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment</atitle><jtitle>Journal of exposure science & environmental epidemiology</jtitle><stitle>J Expo Sci Environ Epidemiol</stitle><addtitle>J Expo Sci Environ Epidemiol</addtitle><date>2022-11-01</date><risdate>2022</risdate><volume>32</volume><issue>6</issue><spage>908</spage><epage>916</epage><pages>908-916</pages><issn>1559-0631</issn><eissn>1559-064X</eissn><abstract>Background
Low-cost sensor networks for monitoring air pollution are an effective tool for expanding spatial resolution beyond the capabilities of existing state and federal reference monitoring stations. However, low-cost sensor data commonly exhibit non-linear biases with respect to environmental conditions that cannot be captured by linear models, therefore requiring extensive lab calibration. Further, these calibration models traditionally produce point estimates or uniform variance predictions which limits their downstream in exposure assessment.
Objective
Build direct field-calibration models using probabilistic gradient boosted decision trees (GBDT) that eliminate the need for resource-intensive lab calibration and that can be used to conduct probabilistic exposure assessments on the neighborhood level.
Methods
Using data from Plantower A003 particulate matter (PM) sensors deployed in Baltimore, MD from November 2018 through November 2019, a fully probabilistic NGBoost GBDT was trained on raw data from sensors co-located with a federal reference monitoring station and compared against linear regression trained on lab calibrated sensor data. The NGBoost predictions were then used in a Monte Carlo interpolation process to generate high spatial resolution probabilistic exposure gradients across Baltimore.
Results
We demonstrate that direct field-calibration of the raw PM
2.5
sensor data using a probabilistic GBDT has improved point and distribution accuracies compared to the linear model, particularly at reference measurements exceeding 25 μg/m
3
, and also on monitors not included in the training set.
Significance
We provide a framework for utilizing the GBDT to conduct probabilistic spatial assessments of human exposure with inverse distance weighting that predicts the probability of a given location exceeding an exposure threshold and provides percentiles of exposure. These probabilistic spatial exposure assessments can be scaled by time and space with minimal modifications. Here, we used the probabilistic exposure assessment methodology to create high quality spatial-temporal PM
2.5
maps on the neighborhood-scale in Baltimore, MD.
Impact statement
We demonstrate how the use of open-source probabilistic machine learning models for in-place sensor calibration outperforms traditional linear models and does not require an initial laboratory calibration step. Further, these probabilistic models can create uniquely probabilistic spatial exposure assessments following a Monte Carlo interpolation process.
Graphical abstract</abstract><cop>New York</cop><pub>Nature Publishing Group US</pub><pmid>36352094</pmid><doi>10.1038/s41370-022-00493-y</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0002-0637-6450</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Air monitoring Air Pollution Assessments Baltimore Calibration Decision trees Environmental conditions Epidemiology Exposure Humans Interpolation Low cost Machine learning Mathematical models Medicine Medicine & Public Health Neighborhoods Particulate emissions Particulate matter Pollution monitoring Probabilistic models Sensors Spatial discrimination Spatial resolution Statistical analysis |
title | Non-linear probabilistic calibration of low-cost environmental air pollution sensor networks for neighborhood level spatiotemporal exposure assessment |
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