Nightingale: web components for protein feature visualization

Nightingale: web components for protein feature visualization

Abstract Motivation The visualization of biological data is a fundamental technique that enables researchers to understand and explain biology. Some of these visualizations have become iconic, for instance: tree views for taxonomy, cartoon rendering of 3D protein structures or tracks to represent fe...

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Veröffentlicht in:Bioinformatics advances 2023-01, Vol.3 (1), p.vbad064-vbad064
Hauptverfasser: Salazar, Gustavo A, Luciani, Aurélien, Watkins, Xavier, Kandasaamy, Swaathi, Rice, Daniel L, Blum, Matthias, Bateman, Alex, Martin, Maria
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container_end_page vbad064
container_issue 1
container_start_page vbad064
container_title Bioinformatics advances
container_volume 3
creator Salazar, Gustavo A
Luciani, Aurélien
Watkins, Xavier
Kandasaamy, Swaathi
Rice, Daniel L
Blum, Matthias
Bateman, Alex
Martin, Maria
description Abstract Motivation The visualization of biological data is a fundamental technique that enables researchers to understand and explain biology. Some of these visualizations have become iconic, for instance: tree views for taxonomy, cartoon rendering of 3D protein structures or tracks to represent features in a gene or protein, for instance in a genome browser. Nightingale provides visualizations in the context of proteins and protein features. Results Nightingale is a library of re-usable data visualization web components that are currently used by UniProt and InterPro, among other projects. The components can be used to display protein sequence features, variants, interaction data, 3D structure, etc. These components are flexible, allowing users to easily view multiple data sources within the same context, as well as compose these components to create a customized view. Availability and implementation Nightingale examples and documentation are freely available at https://ebi-webcomponents.github.io/nightingale/. It is distributed under the MIT license, and its source code can be found at https://github.com/ebi-webcomponents/nightingale.
doi_str_mv 10.1093/bioadv/vbad064
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title Nightingale: web components for protein feature visualization
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