Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background
Chromosome segment substitution line (CSSL) is important for functional analysis and design breeding of target genes. Here, a novel rice CSSL-Z431 was identified from indica restorer line Xihui18 as recipient and japonica Huhan3 as donor. Z431 contained six segments from Huhan3, with average substit...
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| Veröffentlicht in: | Molecular breeding 2022-04, Vol.42 (4), p.19-19, Article 19 |
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| container_title | Molecular breeding |
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| creator | Sun, Shuangfei Wang, Zongbing Xiang, Siqian Lv, Meng Zhou, Kai Li, Juan Liang, Peixuan Li, Miaomiao Li, Ruxiang Ling, Yinghua He, Guanghua Zhao, Fangming |
| description | Chromosome segment substitution line (CSSL) is important for functional analysis and design breeding of target genes. Here, a novel rice CSSL-Z431 was identified from
indica
restorer line Xihui18 as recipient and
japonica
Huhan3 as donor. Z431 contained six segments from Huhan3, with average substitution length of 2.12 Mb. Compared with Xihui18, Z431 increased panicle number per plant (PN) and displayed short-wide grains. The short-wide grain of Z431 was caused by decreased length and increased width of glume cell. Then, thirteen QTLs were identified in secondary F
2
population from Xihui18/Z431. Again, eleven QTLs (
qPL3, qPN3, qGPP12, qSPP12, qGL3, qGW5, qRLW2, qRLW3, qRLW5, qGWT3, qGWT5-2
) were validated by six single-segment substitution lines (SSSLs, S1-S6) developed in F
3
. In addition, fifteen QTLs (
qPN5, qGL1, qGL2, qGL5, qGW1, qGW5-1, qRLW1, qRLW5-2, qGWT1, qGWT2, qYD1, qYD2, qYD3, qYD5, qYD12
) were detected by these SSSLs, while not be identified in the F
2
population. Multiple panicles of Z431 were controlled by
qPN3
and
qPN5
.
OsIAGLU
should be the candidate gene for
qPN3
. The short-wide grain of Z431 was controlled by
qGL3, qGW5
, etc. By DNA sequencing and qRT-PCR analysis, two best candidate genes for
qGL3
and
qGW5
were identified, respectively. In addition, pyramid of different QTLs in D1-D3 and T1-T2 showed independent inheritance or various epistatic effects. So, it is necessary to understand all genetic effects of target QTLs for designing breeding. Furthermore, these secondary substitution lines improved the deficiencies of Xihui18 to some extent, especially increasing yield per plant in S1, S3, S5, D1-D3, T1, and T2. |
| doi_str_mv | 10.1007/s11032-022-01284-x |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_10248596</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2825503710</sourcerecordid><originalsourceid>FETCH-LOGICAL-c541t-76a0cd3196e73317db79919cba16bc1e13a08947f6bcd4c8b1316710f53cbd293</originalsourceid><addsrcrecordid>eNp9kUuLFDEQxxtR3HX1C3iQgBcP25pKuvM4iQw-FgZEdgVvIZ2kZ7P2JGPSLTvgh7d01vVxEPIq6lf_SvFvmsdAnwOl8kUFoJy1lOEGprr2-k5zDL1krZZK3cU3V7TlsuNHzYNarygWaSHuN0dccqo7QY-bb2c-pDmO0dk55nRKdvtit9GfEps8cXhEb-dANiEFkkfy4WJNxlzIPobJtyVMmPRkLjbOlQy2YpATKdEFsjo_X1cSEy6P8uRTvFwiKKTc503JS_IPm3ujnWp4dHOfNB_fvL5YvWvX79-erV6tW9d3MLdSWOo8By2C5BykH6TWoN1gQQwOAnBLle7kiJHvnBqAg5BAx567wTPNT5qXB93dMmyDdzhxsZPZlbi1ZW-yjebvTIqXZpO_GqCsU70WqPDsRqHkL0uos9nG6sI02RTyUg1TrO8px6aIPv0HvcpLSTifYaJjQqiec6TYgXIl11rCePsboOaHu-bgrkF3zU93zTUWPflzjtuSX3YiwA9AxVTahPK7939kvwP2NLCZ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2642668533</pqid></control><display><type>article</type><title>Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background</title><source>PubMed Central</source><source>SpringerLink Journals - AutoHoldings</source><creator>Sun, Shuangfei ; Wang, Zongbing ; Xiang, Siqian ; Lv, Meng ; Zhou, Kai ; Li, Juan ; Liang, Peixuan ; Li, Miaomiao ; Li, Ruxiang ; Ling, Yinghua ; He, Guanghua ; Zhao, Fangming</creator><creatorcontrib>Sun, Shuangfei ; Wang, Zongbing ; Xiang, Siqian ; Lv, Meng ; Zhou, Kai ; Li, Juan ; Liang, Peixuan ; Li, Miaomiao ; Li, Ruxiang ; Ling, Yinghua ; He, Guanghua ; Zhao, Fangming</creatorcontrib><description>Chromosome segment substitution line (CSSL) is important for functional analysis and design breeding of target genes. Here, a novel rice CSSL-Z431 was identified from
indica
restorer line Xihui18 as recipient and
japonica
Huhan3 as donor. Z431 contained six segments from Huhan3, with average substitution length of 2.12 Mb. Compared with Xihui18, Z431 increased panicle number per plant (PN) and displayed short-wide grains. The short-wide grain of Z431 was caused by decreased length and increased width of glume cell. Then, thirteen QTLs were identified in secondary F
2
population from Xihui18/Z431. Again, eleven QTLs (
qPL3, qPN3, qGPP12, qSPP12, qGL3, qGW5, qRLW2, qRLW3, qRLW5, qGWT3, qGWT5-2
) were validated by six single-segment substitution lines (SSSLs, S1-S6) developed in F
3
. In addition, fifteen QTLs (
qPN5, qGL1, qGL2, qGL5, qGW1, qGW5-1, qRLW1, qRLW5-2, qGWT1, qGWT2, qYD1, qYD2, qYD3, qYD5, qYD12
) were detected by these SSSLs, while not be identified in the F
2
population. Multiple panicles of Z431 were controlled by
qPN3
and
qPN5
.
OsIAGLU
should be the candidate gene for
qPN3
. The short-wide grain of Z431 was controlled by
qGL3, qGW5
, etc. By DNA sequencing and qRT-PCR analysis, two best candidate genes for
qGL3
and
qGW5
were identified, respectively. In addition, pyramid of different QTLs in D1-D3 and T1-T2 showed independent inheritance or various epistatic effects. So, it is necessary to understand all genetic effects of target QTLs for designing breeding. Furthermore, these secondary substitution lines improved the deficiencies of Xihui18 to some extent, especially increasing yield per plant in S1, S3, S5, D1-D3, T1, and T2.</description><identifier>ISSN: 1380-3743</identifier><identifier>EISSN: 1572-9788</identifier><identifier>DOI: 10.1007/s11032-022-01284-x</identifier><identifier>PMID: 37309460</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Biomedical and Life Sciences ; Biotechnology ; Breeding ; Chromosomes ; DNA sequencing ; Epistasis ; Functional analysis ; Genes ; Genetic effects ; Heredity ; Life Sciences ; Molecular biology ; Plant biology ; Plant Genetics and Genomics ; Plant Pathology ; Plant Physiology ; Plant Sciences ; Quantitative trait loci ; Rice ; Segments ; Substitutes</subject><ispartof>Molecular breeding, 2022-04, Vol.42 (4), p.19-19, Article 19</ispartof><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2022</rights><rights>The Author(s), under exclusive licence to Springer Nature B.V. 2022.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c541t-76a0cd3196e73317db79919cba16bc1e13a08947f6bcd4c8b1316710f53cbd293</citedby><cites>FETCH-LOGICAL-c541t-76a0cd3196e73317db79919cba16bc1e13a08947f6bcd4c8b1316710f53cbd293</cites><orcidid>0000-0003-2781-0452</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10248596/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10248596/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27922,27923,41486,42555,51317,53789,53791</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/37309460$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Shuangfei</creatorcontrib><creatorcontrib>Wang, Zongbing</creatorcontrib><creatorcontrib>Xiang, Siqian</creatorcontrib><creatorcontrib>Lv, Meng</creatorcontrib><creatorcontrib>Zhou, Kai</creatorcontrib><creatorcontrib>Li, Juan</creatorcontrib><creatorcontrib>Liang, Peixuan</creatorcontrib><creatorcontrib>Li, Miaomiao</creatorcontrib><creatorcontrib>Li, Ruxiang</creatorcontrib><creatorcontrib>Ling, Yinghua</creatorcontrib><creatorcontrib>He, Guanghua</creatorcontrib><creatorcontrib>Zhao, Fangming</creatorcontrib><title>Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background</title><title>Molecular breeding</title><addtitle>Mol Breeding</addtitle><addtitle>Mol Breed</addtitle><description>Chromosome segment substitution line (CSSL) is important for functional analysis and design breeding of target genes. Here, a novel rice CSSL-Z431 was identified from
indica
restorer line Xihui18 as recipient and
japonica
Huhan3 as donor. Z431 contained six segments from Huhan3, with average substitution length of 2.12 Mb. Compared with Xihui18, Z431 increased panicle number per plant (PN) and displayed short-wide grains. The short-wide grain of Z431 was caused by decreased length and increased width of glume cell. Then, thirteen QTLs were identified in secondary F
2
population from Xihui18/Z431. Again, eleven QTLs (
qPL3, qPN3, qGPP12, qSPP12, qGL3, qGW5, qRLW2, qRLW3, qRLW5, qGWT3, qGWT5-2
) were validated by six single-segment substitution lines (SSSLs, S1-S6) developed in F
3
. In addition, fifteen QTLs (
qPN5, qGL1, qGL2, qGL5, qGW1, qGW5-1, qRLW1, qRLW5-2, qGWT1, qGWT2, qYD1, qYD2, qYD3, qYD5, qYD12
) were detected by these SSSLs, while not be identified in the F
2
population. Multiple panicles of Z431 were controlled by
qPN3
and
qPN5
.
OsIAGLU
should be the candidate gene for
qPN3
. The short-wide grain of Z431 was controlled by
qGL3, qGW5
, etc. By DNA sequencing and qRT-PCR analysis, two best candidate genes for
qGL3
and
qGW5
were identified, respectively. In addition, pyramid of different QTLs in D1-D3 and T1-T2 showed independent inheritance or various epistatic effects. So, it is necessary to understand all genetic effects of target QTLs for designing breeding. Furthermore, these secondary substitution lines improved the deficiencies of Xihui18 to some extent, especially increasing yield per plant in S1, S3, S5, D1-D3, T1, and T2.</description><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Breeding</subject><subject>Chromosomes</subject><subject>DNA sequencing</subject><subject>Epistasis</subject><subject>Functional analysis</subject><subject>Genes</subject><subject>Genetic effects</subject><subject>Heredity</subject><subject>Life Sciences</subject><subject>Molecular biology</subject><subject>Plant biology</subject><subject>Plant Genetics and Genomics</subject><subject>Plant Pathology</subject><subject>Plant Physiology</subject><subject>Plant Sciences</subject><subject>Quantitative trait loci</subject><subject>Rice</subject><subject>Segments</subject><subject>Substitutes</subject><issn>1380-3743</issn><issn>1572-9788</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNp9kUuLFDEQxxtR3HX1C3iQgBcP25pKuvM4iQw-FgZEdgVvIZ2kZ7P2JGPSLTvgh7d01vVxEPIq6lf_SvFvmsdAnwOl8kUFoJy1lOEGprr2-k5zDL1krZZK3cU3V7TlsuNHzYNarygWaSHuN0dccqo7QY-bb2c-pDmO0dk55nRKdvtit9GfEps8cXhEb-dANiEFkkfy4WJNxlzIPobJtyVMmPRkLjbOlQy2YpATKdEFsjo_X1cSEy6P8uRTvFwiKKTc503JS_IPm3ujnWp4dHOfNB_fvL5YvWvX79-erV6tW9d3MLdSWOo8By2C5BykH6TWoN1gQQwOAnBLle7kiJHvnBqAg5BAx567wTPNT5qXB93dMmyDdzhxsZPZlbi1ZW-yjebvTIqXZpO_GqCsU70WqPDsRqHkL0uos9nG6sI02RTyUg1TrO8px6aIPv0HvcpLSTifYaJjQqiec6TYgXIl11rCePsboOaHu-bgrkF3zU93zTUWPflzjtuSX3YiwA9AxVTahPK7939kvwP2NLCZ</recordid><startdate>20220401</startdate><enddate>20220401</enddate><creator>Sun, Shuangfei</creator><creator>Wang, Zongbing</creator><creator>Xiang, Siqian</creator><creator>Lv, Meng</creator><creator>Zhou, Kai</creator><creator>Li, Juan</creator><creator>Liang, Peixuan</creator><creator>Li, Miaomiao</creator><creator>Li, Ruxiang</creator><creator>Ling, Yinghua</creator><creator>He, Guanghua</creator><creator>Zhao, Fangming</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X2</scope><scope>8FE</scope><scope>8FH</scope><scope>8FK</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M0K</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-2781-0452</orcidid></search><sort><creationdate>20220401</creationdate><title>Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background</title><author>Sun, Shuangfei ; Wang, Zongbing ; Xiang, Siqian ; Lv, Meng ; Zhou, Kai ; Li, Juan ; Liang, Peixuan ; Li, Miaomiao ; Li, Ruxiang ; Ling, Yinghua ; He, Guanghua ; Zhao, Fangming</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c541t-76a0cd3196e73317db79919cba16bc1e13a08947f6bcd4c8b1316710f53cbd293</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Breeding</topic><topic>Chromosomes</topic><topic>DNA sequencing</topic><topic>Epistasis</topic><topic>Functional analysis</topic><topic>Genes</topic><topic>Genetic effects</topic><topic>Heredity</topic><topic>Life Sciences</topic><topic>Molecular biology</topic><topic>Plant biology</topic><topic>Plant Genetics and Genomics</topic><topic>Plant Pathology</topic><topic>Plant Physiology</topic><topic>Plant Sciences</topic><topic>Quantitative trait loci</topic><topic>Rice</topic><topic>Segments</topic><topic>Substitutes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Shuangfei</creatorcontrib><creatorcontrib>Wang, Zongbing</creatorcontrib><creatorcontrib>Xiang, Siqian</creatorcontrib><creatorcontrib>Lv, Meng</creatorcontrib><creatorcontrib>Zhou, Kai</creatorcontrib><creatorcontrib>Li, Juan</creatorcontrib><creatorcontrib>Liang, Peixuan</creatorcontrib><creatorcontrib>Li, Miaomiao</creatorcontrib><creatorcontrib>Li, Ruxiang</creatorcontrib><creatorcontrib>Ling, Yinghua</creatorcontrib><creatorcontrib>He, Guanghua</creatorcontrib><creatorcontrib>Zhao, Fangming</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Agricultural Science Collection</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Molecular breeding</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Shuangfei</au><au>Wang, Zongbing</au><au>Xiang, Siqian</au><au>Lv, Meng</au><au>Zhou, Kai</au><au>Li, Juan</au><au>Liang, Peixuan</au><au>Li, Miaomiao</au><au>Li, Ruxiang</au><au>Ling, Yinghua</au><au>He, Guanghua</au><au>Zhao, Fangming</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background</atitle><jtitle>Molecular breeding</jtitle><stitle>Mol Breeding</stitle><addtitle>Mol Breed</addtitle><date>2022-04-01</date><risdate>2022</risdate><volume>42</volume><issue>4</issue><spage>19</spage><epage>19</epage><pages>19-19</pages><artnum>19</artnum><issn>1380-3743</issn><eissn>1572-9788</eissn><abstract>Chromosome segment substitution line (CSSL) is important for functional analysis and design breeding of target genes. Here, a novel rice CSSL-Z431 was identified from
indica
restorer line Xihui18 as recipient and
japonica
Huhan3 as donor. Z431 contained six segments from Huhan3, with average substitution length of 2.12 Mb. Compared with Xihui18, Z431 increased panicle number per plant (PN) and displayed short-wide grains. The short-wide grain of Z431 was caused by decreased length and increased width of glume cell. Then, thirteen QTLs were identified in secondary F
2
population from Xihui18/Z431. Again, eleven QTLs (
qPL3, qPN3, qGPP12, qSPP12, qGL3, qGW5, qRLW2, qRLW3, qRLW5, qGWT3, qGWT5-2
) were validated by six single-segment substitution lines (SSSLs, S1-S6) developed in F
3
. In addition, fifteen QTLs (
qPN5, qGL1, qGL2, qGL5, qGW1, qGW5-1, qRLW1, qRLW5-2, qGWT1, qGWT2, qYD1, qYD2, qYD3, qYD5, qYD12
) were detected by these SSSLs, while not be identified in the F
2
population. Multiple panicles of Z431 were controlled by
qPN3
and
qPN5
.
OsIAGLU
should be the candidate gene for
qPN3
. The short-wide grain of Z431 was controlled by
qGL3, qGW5
, etc. By DNA sequencing and qRT-PCR analysis, two best candidate genes for
qGL3
and
qGW5
were identified, respectively. In addition, pyramid of different QTLs in D1-D3 and T1-T2 showed independent inheritance or various epistatic effects. So, it is necessary to understand all genetic effects of target QTLs for designing breeding. Furthermore, these secondary substitution lines improved the deficiencies of Xihui18 to some extent, especially increasing yield per plant in S1, S3, S5, D1-D3, T1, and T2.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>37309460</pmid><doi>10.1007/s11032-022-01284-x</doi><tpages>1</tpages><orcidid>https://orcid.org/0000-0003-2781-0452</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Biomedical and Life Sciences Biotechnology Breeding Chromosomes DNA sequencing Epistasis Functional analysis Genes Genetic effects Heredity Life Sciences Molecular biology Plant biology Plant Genetics and Genomics Plant Pathology Plant Physiology Plant Sciences Quantitative trait loci Rice Segments Substitutes |
| title | Identification, pyramid, and candidate gene of QTL for yield-related traits based on rice CSSLs in indica Xihui18 background |
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