The eukaryotic promoter database (EPD)
The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation p...
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| Veröffentlicht in: | Nucleic acids research 2000-01, Vol.28 (1), p.302-303 |
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| container_title | Nucleic acids research |
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| creator | Périer, R C Praz, V Junier, T Bonnard, C Bucher, P |
| description | The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes a description of the initiation site mapping data, exhaustive cross-references to the EMBL nucleotide sequence database, SWISS-PROT, TRANSFAC and other databases, as well as bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. WWW-based interfaces have been developed that enable the user to view EPD entries in different formats, to select and extract promoter sequences according to a variety of criteria, and to navigate to related databases exploiting different cross-references. The EPD web site also features yearly updated base frequency matrices for major eukaryotic promoter elements. EPD can be accessed at http://www.epd.isb-sib.ch |
| doi_str_mv | 10.1093/nar/28.1.302 |
| format | Article |
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Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes a description of the initiation site mapping data, exhaustive cross-references to the EMBL nucleotide sequence database, SWISS-PROT, TRANSFAC and other databases, as well as bibliographic references. EPD is structured in a way that facilitates dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis. WWW-based interfaces have been developed that enable the user to view EPD entries in different formats, to select and extract promoter sequences according to a variety of criteria, and to navigate to related databases exploiting different cross-references. The EPD web site also features yearly updated base frequency matrices for major eukaryotic promoter elements. EPD can be accessed at http://www.epd.isb-sib.ch</abstract><cop>England</cop><pub>Oxford Publishing Limited (England)</pub><pmid>10592254</pmid><doi>10.1093/nar/28.1.302</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| ispartof | Nucleic acids research, 2000-01, Vol.28 (1), p.302-303 |
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| source | MEDLINE; Access via Oxford University Press (Open Access Collection); Oxford University Press Journals All Titles (1996-Current); PubMed Central; Free Full-Text Journals in Chemistry |
| subjects | Database Management Systems Databases, Factual Eukaryotic Cells Eukaryotic Promoter Database Internet Promoter Regions, Genetic User-Computer Interface |
| title | The eukaryotic promoter database (EPD) |
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