Methyl-Based Methanogenesis: an Ecological and Genomic Review
Methyl-based methanogenesis is one of three broad categories of archaeal anaerobic methanogenesis, including both the methyl dismutation (methylotrophic) pathway and the methyl-reducing (also known as hydrogen-dependent methylotrophic) pathway. Methyl-based methanogenesis is increasingly recognized...
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| Veröffentlicht in: | Microbiology and molecular biology reviews 2023-03, Vol.87 (1), p.e0002422 |
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| creator | Bueno de Mesquita, Clifton P Wu, Dongying Tringe, Susannah G |
| description | Methyl-based methanogenesis is one of three broad categories of archaeal anaerobic methanogenesis, including both the methyl dismutation (methylotrophic) pathway and the methyl-reducing (also known as hydrogen-dependent methylotrophic) pathway. Methyl-based methanogenesis is increasingly recognized as an important source of methane in a variety of environments. Here, we provide an overview of methyl-based methanogenesis research, including the conditions under which methyl-based methanogenesis can be a dominant source of methane emissions, experimental methods for distinguishing different pathways of methane production, molecular details of the biochemical pathways involved, and the genes and organisms involved in these processes. We also identify the current gaps in knowledge and present a genomic and metagenomic survey of methyl-based methanogenesis genes, highlighting the diversity of methyl-based methanogens at multiple taxonomic levels and the widespread distribution of known methyl-based methanogenesis genes and families across different environments. |
| doi_str_mv | 10.1128/mmbr.00024-22 |
| format | Article |
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Methyl-based methanogenesis is increasingly recognized as an important source of methane in a variety of environments. Here, we provide an overview of methyl-based methanogenesis research, including the conditions under which methyl-based methanogenesis can be a dominant source of methane emissions, experimental methods for distinguishing different pathways of methane production, molecular details of the biochemical pathways involved, and the genes and organisms involved in these processes. 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Wu, Dongying ; Tringe, Susannah G</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-a478t-d4d0f29ff43d5afb1354740313a3a1b97edc42b39329ea6a9046f51c1482fdda3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>anaerobic catabolic pathways</topic><topic>archaea</topic><topic>Archaea - genetics</topic><topic>Archaea - metabolism</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Emissions</topic><topic>Euryarchaeota - genetics</topic><topic>Euryarchaeota - metabolism</topic><topic>Experimental methods</topic><topic>Genes</topic><topic>Genomics</topic><topic>Humans</topic><topic>Metagenomics</topic><topic>Methane</topic><topic>Methane - metabolism</topic><topic>Methanogenesis</topic><topic>Methanogenic bacteria</topic><topic>methanogens</topic><topic>methylated compounds</topic><topic>methylotrophs</topic><topic>Physiology and Metabolism</topic><topic>Review</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bueno de Mesquita, Clifton P</creatorcontrib><creatorcontrib>Wu, Dongying</creatorcontrib><creatorcontrib>Tringe, Susannah G</creatorcontrib><creatorcontrib>USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV - Hybrid</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbiology and molecular biology reviews</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bueno de Mesquita, Clifton P</au><au>Wu, Dongying</au><au>Tringe, Susannah G</au><aucorp>USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)</aucorp><aucorp>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Methyl-Based Methanogenesis: an Ecological and Genomic Review</atitle><jtitle>Microbiology and molecular biology reviews</jtitle><stitle>Microbiol Mol Biol Rev</stitle><addtitle>Microbiol Mol Biol Rev</addtitle><date>2023-03-21</date><risdate>2023</risdate><volume>87</volume><issue>1</issue><spage>e0002422</spage><pages>e0002422-</pages><issn>1092-2172</issn><issn>1098-5557</issn><eissn>1098-5557</eissn><abstract>Methyl-based methanogenesis is one of three broad categories of archaeal anaerobic methanogenesis, including both the methyl dismutation (methylotrophic) pathway and the methyl-reducing (also known as hydrogen-dependent methylotrophic) pathway. 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| source | American Society for Microbiology; MEDLINE; PubMed Central |
| subjects | anaerobic catabolic pathways archaea Archaea - genetics Archaea - metabolism BASIC BIOLOGICAL SCIENCES Emissions Euryarchaeota - genetics Euryarchaeota - metabolism Experimental methods Genes Genomics Humans Metagenomics Methane Methane - metabolism Methanogenesis Methanogenic bacteria methanogens methylated compounds methylotrophs Physiology and Metabolism Review |
| title | Methyl-Based Methanogenesis: an Ecological and Genomic Review |
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