Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin
Ferritin with a highly symmetrical cage-like structure is not only key in the reversible storage of iron in efficient ferroxidase activity; it also provides unique coordination environments for the conjugation of heavy metal ions other than those associated with iron. However, research regarding the...
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description | Ferritin with a highly symmetrical cage-like structure is not only key in the reversible storage of iron in efficient ferroxidase activity; it also provides unique coordination environments for the conjugation of heavy metal ions other than those associated with iron. However, research regarding the effect of these bound heavy metal ions on ferritin is scarce. In the present study, we prepared a marine invertebrate ferritin from
(DzFer) and found that it could withstand extreme pH fluctuation. We then demonstrated its capacity to interact with Ag
or Cu
ions using various biochemical and spectroscopic methods and X-ray crystallography. Structural and biochemical analyses revealed that both Ag
and Cu
were able to bind to the DzFer cage via metal-coordination bonds and that their binding sites were mainly located inside the three-fold channel of DzFer. Furthermore, Ag
was shown to have a higher selectivity for sulfur-containing amino acid residues and appeared to bind preferentially at the ferroxidase site of DzFer as compared with Cu
. Thus, it is far more likely to inhibit the ferroxidase activity of DzFer. The results provide new insights into the effect of heavy metal ions on the iron-binding capacity of a marine invertebrate ferritin. |
doi_str_mv | 10.3390/polym15051297 |
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(DzFer) and found that it could withstand extreme pH fluctuation. We then demonstrated its capacity to interact with Ag
or Cu
ions using various biochemical and spectroscopic methods and X-ray crystallography. Structural and biochemical analyses revealed that both Ag
and Cu
were able to bind to the DzFer cage via metal-coordination bonds and that their binding sites were mainly located inside the three-fold channel of DzFer. Furthermore, Ag
was shown to have a higher selectivity for sulfur-containing amino acid residues and appeared to bind preferentially at the ferroxidase site of DzFer as compared with Cu
. Thus, it is far more likely to inhibit the ferroxidase activity of DzFer. The results provide new insights into the effect of heavy metal ions on the iron-binding capacity of a marine invertebrate ferritin.</description><identifier>ISSN: 2073-4360</identifier><identifier>EISSN: 2073-4360</identifier><identifier>DOI: 10.3390/polym15051297</identifier><identifier>PMID: 36904538</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Amino acids ; Binding sites ; Biochemistry ; Cages ; Conjugation ; Coordination ; Copper ; Crystallography ; Ferritin ; Heavy metals ; Hemodialysis ; Homeostasis ; Invertebrates ; Iron ; Proteins ; Selectivity ; Silver ; Structural analysis</subject><ispartof>Polymers, 2023-03, Vol.15 (5), p.1297</ispartof><rights>2023 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 by the authors. 2023</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c416t-15cd7db67083378aead09731d48279db6bc81f42e13266d6222d936e766220ff3</citedby><cites>FETCH-LOGICAL-c416t-15cd7db67083378aead09731d48279db6bc81f42e13266d6222d936e766220ff3</cites><orcidid>0000-0002-6159-6632 ; 0000-0003-2336-191X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007213/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC10007213/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36904538$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Huo, Chunheng</creatorcontrib><creatorcontrib>Ming, Tinghong</creatorcontrib><creatorcontrib>Wu, Yan</creatorcontrib><creatorcontrib>Huan, Hengshang</creatorcontrib><creatorcontrib>Qiu, Xiaoting</creatorcontrib><creatorcontrib>Lu, Chenyang</creatorcontrib><creatorcontrib>Li, Ye</creatorcontrib><creatorcontrib>Zhang, Zhen</creatorcontrib><creatorcontrib>Han, Jiaojiao</creatorcontrib><creatorcontrib>Su, Xiurong</creatorcontrib><title>Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin</title><title>Polymers</title><addtitle>Polymers (Basel)</addtitle><description>Ferritin with a highly symmetrical cage-like structure is not only key in the reversible storage of iron in efficient ferroxidase activity; it also provides unique coordination environments for the conjugation of heavy metal ions other than those associated with iron. However, research regarding the effect of these bound heavy metal ions on ferritin is scarce. In the present study, we prepared a marine invertebrate ferritin from
(DzFer) and found that it could withstand extreme pH fluctuation. We then demonstrated its capacity to interact with Ag
or Cu
ions using various biochemical and spectroscopic methods and X-ray crystallography. Structural and biochemical analyses revealed that both Ag
and Cu
were able to bind to the DzFer cage via metal-coordination bonds and that their binding sites were mainly located inside the three-fold channel of DzFer. Furthermore, Ag
was shown to have a higher selectivity for sulfur-containing amino acid residues and appeared to bind preferentially at the ferroxidase site of DzFer as compared with Cu
. Thus, it is far more likely to inhibit the ferroxidase activity of DzFer. The results provide new insights into the effect of heavy metal ions on the iron-binding capacity of a marine invertebrate ferritin.</description><subject>Amino acids</subject><subject>Binding sites</subject><subject>Biochemistry</subject><subject>Cages</subject><subject>Conjugation</subject><subject>Coordination</subject><subject>Copper</subject><subject>Crystallography</subject><subject>Ferritin</subject><subject>Heavy metals</subject><subject>Hemodialysis</subject><subject>Homeostasis</subject><subject>Invertebrates</subject><subject>Iron</subject><subject>Proteins</subject><subject>Selectivity</subject><subject>Silver</subject><subject>Structural analysis</subject><issn>2073-4360</issn><issn>2073-4360</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNpdkctLxDAQxoMoKurRqxS8eKnm0SbtSXR9guBBPYdsMt1maZOatAvrX2_EB-pcZob58ZEvH0KHBJ8yVuOzwXfrnpS4JLQWG2iXYsHygnG8-WveQQcxLnGqouSciG20w3idFlbtov5pDJMep6C6TDmTXVqvW-itTvusVUHpEYJ9U6P1LvNN9mS7FYSzmR8GCIl2xrpFNl9nV-BM8KFdO91OMXtrYWmVW4CLNmY3EIIdrdtHW43qIhx89T30cnP9PLvLHx5v72cXD7kuCB9zUmojzJwLXDEmKgXK4FowYoqKijod5roiTUGBMMq54ZRSUzMOgqcRNw3bQ-efusM078FocGMyKIdgexXW0isr_16cbeXCryRJvyQoYUnh5Esh-NcJ4ih7GzV0nXLgpyipqDjBRVUWCT3-hy79FFzy90GVSY2TMlH5J6WDjzFA8_MaguVHmPJPmIk_-m3hh_6Ojr0D5uycvw</recordid><startdate>20230303</startdate><enddate>20230303</enddate><creator>Huo, Chunheng</creator><creator>Ming, Tinghong</creator><creator>Wu, Yan</creator><creator>Huan, Hengshang</creator><creator>Qiu, Xiaoting</creator><creator>Lu, Chenyang</creator><creator>Li, Ye</creator><creator>Zhang, Zhen</creator><creator>Han, Jiaojiao</creator><creator>Su, Xiurong</creator><general>MDPI AG</general><general>MDPI</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8FD</scope><scope>8FE</scope><scope>8FG</scope><scope>ABJCF</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>BGLVJ</scope><scope>CCPQU</scope><scope>D1I</scope><scope>DWQXO</scope><scope>HCIFZ</scope><scope>JG9</scope><scope>KB.</scope><scope>PDBOC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-6159-6632</orcidid><orcidid>https://orcid.org/0000-0003-2336-191X</orcidid></search><sort><creationdate>20230303</creationdate><title>Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin</title><author>Huo, Chunheng ; Ming, Tinghong ; Wu, Yan ; Huan, Hengshang ; Qiu, Xiaoting ; Lu, Chenyang ; Li, Ye ; Zhang, Zhen ; Han, Jiaojiao ; Su, Xiurong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c416t-15cd7db67083378aead09731d48279db6bc81f42e13266d6222d936e766220ff3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Amino acids</topic><topic>Binding sites</topic><topic>Biochemistry</topic><topic>Cages</topic><topic>Conjugation</topic><topic>Coordination</topic><topic>Copper</topic><topic>Crystallography</topic><topic>Ferritin</topic><topic>Heavy metals</topic><topic>Hemodialysis</topic><topic>Homeostasis</topic><topic>Invertebrates</topic><topic>Iron</topic><topic>Proteins</topic><topic>Selectivity</topic><topic>Silver</topic><topic>Structural analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Huo, Chunheng</creatorcontrib><creatorcontrib>Ming, Tinghong</creatorcontrib><creatorcontrib>Wu, Yan</creatorcontrib><creatorcontrib>Huan, Hengshang</creatorcontrib><creatorcontrib>Qiu, Xiaoting</creatorcontrib><creatorcontrib>Lu, Chenyang</creatorcontrib><creatorcontrib>Li, Ye</creatorcontrib><creatorcontrib>Zhang, Zhen</creatorcontrib><creatorcontrib>Han, Jiaojiao</creatorcontrib><creatorcontrib>Su, Xiurong</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>Engineered Materials Abstracts</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Technology Collection</collection><collection>Materials Science & Engineering Collection</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>Technology Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Materials Science Collection</collection><collection>ProQuest Central Korea</collection><collection>SciTech Premium Collection</collection><collection>Materials Research Database</collection><collection>Materials Science Database</collection><collection>Materials Science Collection</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Polymers</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Huo, Chunheng</au><au>Ming, Tinghong</au><au>Wu, Yan</au><au>Huan, Hengshang</au><au>Qiu, Xiaoting</au><au>Lu, Chenyang</au><au>Li, Ye</au><au>Zhang, Zhen</au><au>Han, Jiaojiao</au><au>Su, Xiurong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin</atitle><jtitle>Polymers</jtitle><addtitle>Polymers (Basel)</addtitle><date>2023-03-03</date><risdate>2023</risdate><volume>15</volume><issue>5</issue><spage>1297</spage><pages>1297-</pages><issn>2073-4360</issn><eissn>2073-4360</eissn><abstract>Ferritin with a highly symmetrical cage-like structure is not only key in the reversible storage of iron in efficient ferroxidase activity; it also provides unique coordination environments for the conjugation of heavy metal ions other than those associated with iron. However, research regarding the effect of these bound heavy metal ions on ferritin is scarce. In the present study, we prepared a marine invertebrate ferritin from
(DzFer) and found that it could withstand extreme pH fluctuation. We then demonstrated its capacity to interact with Ag
or Cu
ions using various biochemical and spectroscopic methods and X-ray crystallography. Structural and biochemical analyses revealed that both Ag
and Cu
were able to bind to the DzFer cage via metal-coordination bonds and that their binding sites were mainly located inside the three-fold channel of DzFer. Furthermore, Ag
was shown to have a higher selectivity for sulfur-containing amino acid residues and appeared to bind preferentially at the ferroxidase site of DzFer as compared with Cu
. Thus, it is far more likely to inhibit the ferroxidase activity of DzFer. The results provide new insights into the effect of heavy metal ions on the iron-binding capacity of a marine invertebrate ferritin.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>36904538</pmid><doi>10.3390/polym15051297</doi><orcidid>https://orcid.org/0000-0002-6159-6632</orcidid><orcidid>https://orcid.org/0000-0003-2336-191X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Binding sites Biochemistry Cages Conjugation Coordination Copper Crystallography Ferritin Heavy metals Hemodialysis Homeostasis Invertebrates Iron Proteins Selectivity Silver Structural analysis |
title | Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin |
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