Genome-wide identification and functional analysis of mRNA m 6 A writers in soybean under abiotic stress

N -methyladenosine (m A), a well-characterized RNA modification, is involved in regulating multiple biological processes; however, genome-wide identification and functional characterization of the m A modification in legume plants, including soybean ( (L.) Merr.), remains lacking. In this study, we...

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Veröffentlicht in:Frontiers in plant science 2024, Vol.15, p.1446591
Hauptverfasser: Liu, Peng, Liu, Huijie, Zhao, Jie, Yang, Tengfeng, Guo, Sichao, Chang, Luo, Xiao, Tianyun, Xu, Anjie, Liu, Xiaoye, Zhu, Changhua, Gan, Lijun, Chen, Mingjia
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container_start_page 1446591
container_title Frontiers in plant science
container_volume 15
creator Liu, Peng
Liu, Huijie
Zhao, Jie
Yang, Tengfeng
Guo, Sichao
Chang, Luo
Xiao, Tianyun
Xu, Anjie
Liu, Xiaoye
Zhu, Changhua
Gan, Lijun
Chen, Mingjia
description N -methyladenosine (m A), a well-characterized RNA modification, is involved in regulating multiple biological processes; however, genome-wide identification and functional characterization of the m A modification in legume plants, including soybean ( (L.) Merr.), remains lacking. In this study, we utilized bioinformatics tools to perform comprehensive analyses of molecular writer candidates associated with the RNA m A modification in soybean, characterizing their conserved domains, motifs, gene structures, promoters, and spatial expression patterns. Thirteen m A writer complex genes in soybean were identified, which were assigned to four families: MT-A70, WTAP, VIR, and HAKAI. It also can be identified that multiple cis elements in the promoters of these genes, which were classified into five distinct groups, including elements responsive to light, phytohormone regulation, environmental stress, development, and others, suggesting that these genes may modulate various cellular and physiological processes in plants. Importantly, the enzymatic activities of two identified m A writers, GmMTA1 and GmMTA2, were confirmed . Furthermore, we analyzed the expression patterns of the s and s under different abiotic stresses, revealing their potential involvement in stress tolerance, especially in the response to alkalinity or darkness. Overexpressing and in soybean altered the tolerance of the plants to alkalinity and long-term darkness, further confirming their effect on the stress response. Collectively, our findings identified the RNA m A writer candidates in leguminous plants and highlighted the potential roles of s and s in the response to abiotic stress in soybean.
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Furthermore, we analyzed the expression patterns of the s and s under different abiotic stresses, revealing their potential involvement in stress tolerance, especially in the response to alkalinity or darkness. Overexpressing and in soybean altered the tolerance of the plants to alkalinity and long-term darkness, further confirming their effect on the stress response. 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title Genome-wide identification and functional analysis of mRNA m 6 A writers in soybean under abiotic stress
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