ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m 6 A modification
Previous studies have demonstrated the role of N6-methyladenosine (m A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipogenesis in poultry. The 6 100-day-old female chickens were categorized into high (n = 3)...
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Veröffentlicht in: | BMC genomics 2024-06, Vol.25 (1), p.634 |
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creator | Chao, Xiaohuan Guo, Lijin Ye, Chutian Liu, Aijun Wang, Xiaomeng Ye, Mao Fan, Zhexia Luan, Kang Chen, Jiahao Zhang, Chunlei Liu, Manqing Zhou, Bo Zhang, Xiquan Li, Zhenhui Luo, Qingbin |
description | Previous studies have demonstrated the role of N6-methyladenosine (m
A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipogenesis in poultry.
The 6 100-day-old female chickens were categorized into high (n = 3) and low-fat chickens (n = 3) based on their abdominal fat ratios, and their abdominal fat tissues were processed for MeRIP-seq and RNA-seq. An integrated analysis of MeRIP-seq and RNA-seq omics data revealed 16 differentially expressed genes associated with to differential m
A modifications. Among them, ELOVL fatty acid elongase 2 (ELOVL2), pyruvate dehydrogenase kinase 4 (PDK4), fatty acid binding protein 9 (PMP2), fatty acid binding protein 1 (FABP1), lysosomal associated membrane protein 3 (LAMP3), lecithin-cholesterol acyltransferase (LCAT) and solute carrier family 2 member 1 (SLC2A1) have ever been reported to be associated with adipogenesis. Interestingly, LCAT was down-regulated and expressed along with decreased levels of mRNA methylation methylation in the low-fat group. Mechanistically, the highly expressed ALKBH5 gene regulates LCAT RNA demethylation and affects LCAT mRNA stability. In addition, LCAT inhibits preadipocyte proliferation and promotes preadipocyte differentiation, and plays a key role in adipogenesis.
In conclusion, ALKBH5 mediates RNA stability of LCAT through demethylation and affects chicken adipogenesis. This study provides a theoretical basis for further understanding of RNA methylation regulation in chicken adipogenesis. |
doi_str_mv | 10.1186/s12864-024-10537-2 |
format | Article |
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A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipogenesis in poultry.
The 6 100-day-old female chickens were categorized into high (n = 3) and low-fat chickens (n = 3) based on their abdominal fat ratios, and their abdominal fat tissues were processed for MeRIP-seq and RNA-seq. An integrated analysis of MeRIP-seq and RNA-seq omics data revealed 16 differentially expressed genes associated with to differential m
A modifications. Among them, ELOVL fatty acid elongase 2 (ELOVL2), pyruvate dehydrogenase kinase 4 (PDK4), fatty acid binding protein 9 (PMP2), fatty acid binding protein 1 (FABP1), lysosomal associated membrane protein 3 (LAMP3), lecithin-cholesterol acyltransferase (LCAT) and solute carrier family 2 member 1 (SLC2A1) have ever been reported to be associated with adipogenesis. Interestingly, LCAT was down-regulated and expressed along with decreased levels of mRNA methylation methylation in the low-fat group. Mechanistically, the highly expressed ALKBH5 gene regulates LCAT RNA demethylation and affects LCAT mRNA stability. In addition, LCAT inhibits preadipocyte proliferation and promotes preadipocyte differentiation, and plays a key role in adipogenesis.
In conclusion, ALKBH5 mediates RNA stability of LCAT through demethylation and affects chicken adipogenesis. This study provides a theoretical basis for further understanding of RNA methylation regulation in chicken adipogenesis.</description><identifier>EISSN: 1471-2164</identifier><identifier>DOI: 10.1186/s12864-024-10537-2</identifier><identifier>PMID: 38918701</identifier><language>eng</language><publisher>England</publisher><subject>Adenosine - analogs & derivatives ; Adenosine - metabolism ; Adipogenesis - genetics ; AlkB Homolog 5, RNA Demethylase - genetics ; AlkB Homolog 5, RNA Demethylase - metabolism ; Animals ; Chickens - genetics ; Chickens - metabolism ; Female ; Methylation ; Phosphatidylcholine-Sterol O-Acyltransferase - genetics ; Phosphatidylcholine-Sterol O-Acyltransferase - metabolism ; RNA Stability ; RNA, Messenger - genetics ; RNA, Messenger - metabolism</subject><ispartof>BMC genomics, 2024-06, Vol.25 (1), p.634</ispartof><rights>2024. The Author(s).</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,864,27923,27924</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38918701$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Chao, Xiaohuan</creatorcontrib><creatorcontrib>Guo, Lijin</creatorcontrib><creatorcontrib>Ye, Chutian</creatorcontrib><creatorcontrib>Liu, Aijun</creatorcontrib><creatorcontrib>Wang, Xiaomeng</creatorcontrib><creatorcontrib>Ye, Mao</creatorcontrib><creatorcontrib>Fan, Zhexia</creatorcontrib><creatorcontrib>Luan, Kang</creatorcontrib><creatorcontrib>Chen, Jiahao</creatorcontrib><creatorcontrib>Zhang, Chunlei</creatorcontrib><creatorcontrib>Liu, Manqing</creatorcontrib><creatorcontrib>Zhou, Bo</creatorcontrib><creatorcontrib>Zhang, Xiquan</creatorcontrib><creatorcontrib>Li, Zhenhui</creatorcontrib><creatorcontrib>Luo, Qingbin</creatorcontrib><title>ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m 6 A modification</title><title>BMC genomics</title><addtitle>BMC Genomics</addtitle><description>Previous studies have demonstrated the role of N6-methyladenosine (m
A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipogenesis in poultry.
The 6 100-day-old female chickens were categorized into high (n = 3) and low-fat chickens (n = 3) based on their abdominal fat ratios, and their abdominal fat tissues were processed for MeRIP-seq and RNA-seq. An integrated analysis of MeRIP-seq and RNA-seq omics data revealed 16 differentially expressed genes associated with to differential m
A modifications. Among them, ELOVL fatty acid elongase 2 (ELOVL2), pyruvate dehydrogenase kinase 4 (PDK4), fatty acid binding protein 9 (PMP2), fatty acid binding protein 1 (FABP1), lysosomal associated membrane protein 3 (LAMP3), lecithin-cholesterol acyltransferase (LCAT) and solute carrier family 2 member 1 (SLC2A1) have ever been reported to be associated with adipogenesis. Interestingly, LCAT was down-regulated and expressed along with decreased levels of mRNA methylation methylation in the low-fat group. Mechanistically, the highly expressed ALKBH5 gene regulates LCAT RNA demethylation and affects LCAT mRNA stability. In addition, LCAT inhibits preadipocyte proliferation and promotes preadipocyte differentiation, and plays a key role in adipogenesis.
In conclusion, ALKBH5 mediates RNA stability of LCAT through demethylation and affects chicken adipogenesis. This study provides a theoretical basis for further understanding of RNA methylation regulation in chicken adipogenesis.</description><subject>Adenosine - analogs & derivatives</subject><subject>Adenosine - metabolism</subject><subject>Adipogenesis - genetics</subject><subject>AlkB Homolog 5, RNA Demethylase - genetics</subject><subject>AlkB Homolog 5, RNA Demethylase - metabolism</subject><subject>Animals</subject><subject>Chickens - genetics</subject><subject>Chickens - metabolism</subject><subject>Female</subject><subject>Methylation</subject><subject>Phosphatidylcholine-Sterol O-Acyltransferase - genetics</subject><subject>Phosphatidylcholine-Sterol O-Acyltransferase - metabolism</subject><subject>RNA Stability</subject><subject>RNA, Messenger - genetics</subject><subject>RNA, Messenger - metabolism</subject><issn>1471-2164</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFjs1OwzAQhC2kirbAC3BA-wIGr_NnjqECVaLigHqvnHgTto2dKE4PeXuKBGdOc5hvPo0Q96geEU3-FFGbPJVKpxJVlhRSX4kVpgVKjXm6FOsYj0phYXR2LZaJeUZTKFyJpty9v2wzGKk9d3aiCPUX1ycKYB0PfUuBIkeoZvDk2E4cWthtyj34z48S4mQr7niawdFAwf20fQAPOZTge8cN15dNH27ForFdpLvfvBEPb6_7zVYO5-oiPgwjezvOh79jyb_AN_4WSEE</recordid><startdate>20240625</startdate><enddate>20240625</enddate><creator>Chao, Xiaohuan</creator><creator>Guo, Lijin</creator><creator>Ye, Chutian</creator><creator>Liu, Aijun</creator><creator>Wang, Xiaomeng</creator><creator>Ye, Mao</creator><creator>Fan, Zhexia</creator><creator>Luan, Kang</creator><creator>Chen, Jiahao</creator><creator>Zhang, Chunlei</creator><creator>Liu, Manqing</creator><creator>Zhou, Bo</creator><creator>Zhang, Xiquan</creator><creator>Li, Zhenhui</creator><creator>Luo, Qingbin</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope></search><sort><creationdate>20240625</creationdate><title>ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m 6 A modification</title><author>Chao, Xiaohuan ; Guo, Lijin ; Ye, Chutian ; Liu, Aijun ; Wang, Xiaomeng ; Ye, Mao ; Fan, Zhexia ; Luan, Kang ; Chen, Jiahao ; Zhang, Chunlei ; Liu, Manqing ; Zhou, Bo ; Zhang, Xiquan ; Li, Zhenhui ; Luo, Qingbin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-pubmed_primary_389187013</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><topic>Adenosine - analogs & derivatives</topic><topic>Adenosine - metabolism</topic><topic>Adipogenesis - genetics</topic><topic>AlkB Homolog 5, RNA Demethylase - genetics</topic><topic>AlkB Homolog 5, RNA Demethylase - metabolism</topic><topic>Animals</topic><topic>Chickens - genetics</topic><topic>Chickens - metabolism</topic><topic>Female</topic><topic>Methylation</topic><topic>Phosphatidylcholine-Sterol O-Acyltransferase - genetics</topic><topic>Phosphatidylcholine-Sterol O-Acyltransferase - metabolism</topic><topic>RNA Stability</topic><topic>RNA, Messenger - genetics</topic><topic>RNA, Messenger - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chao, Xiaohuan</creatorcontrib><creatorcontrib>Guo, Lijin</creatorcontrib><creatorcontrib>Ye, Chutian</creatorcontrib><creatorcontrib>Liu, Aijun</creatorcontrib><creatorcontrib>Wang, Xiaomeng</creatorcontrib><creatorcontrib>Ye, Mao</creatorcontrib><creatorcontrib>Fan, Zhexia</creatorcontrib><creatorcontrib>Luan, Kang</creatorcontrib><creatorcontrib>Chen, Jiahao</creatorcontrib><creatorcontrib>Zhang, Chunlei</creatorcontrib><creatorcontrib>Liu, Manqing</creatorcontrib><creatorcontrib>Zhou, Bo</creatorcontrib><creatorcontrib>Zhang, Xiquan</creatorcontrib><creatorcontrib>Li, Zhenhui</creatorcontrib><creatorcontrib>Luo, Qingbin</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><jtitle>BMC genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chao, Xiaohuan</au><au>Guo, Lijin</au><au>Ye, Chutian</au><au>Liu, Aijun</au><au>Wang, Xiaomeng</au><au>Ye, Mao</au><au>Fan, Zhexia</au><au>Luan, Kang</au><au>Chen, Jiahao</au><au>Zhang, Chunlei</au><au>Liu, Manqing</au><au>Zhou, Bo</au><au>Zhang, Xiquan</au><au>Li, Zhenhui</au><au>Luo, Qingbin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m 6 A modification</atitle><jtitle>BMC genomics</jtitle><addtitle>BMC Genomics</addtitle><date>2024-06-25</date><risdate>2024</risdate><volume>25</volume><issue>1</issue><spage>634</spage><pages>634-</pages><eissn>1471-2164</eissn><abstract>Previous studies have demonstrated the role of N6-methyladenosine (m
A) RNA methylation in various biological processes, our research is the first to elucidate its specific impact on LCAT mRNA stability and adipogenesis in poultry.
The 6 100-day-old female chickens were categorized into high (n = 3) and low-fat chickens (n = 3) based on their abdominal fat ratios, and their abdominal fat tissues were processed for MeRIP-seq and RNA-seq. An integrated analysis of MeRIP-seq and RNA-seq omics data revealed 16 differentially expressed genes associated with to differential m
A modifications. Among them, ELOVL fatty acid elongase 2 (ELOVL2), pyruvate dehydrogenase kinase 4 (PDK4), fatty acid binding protein 9 (PMP2), fatty acid binding protein 1 (FABP1), lysosomal associated membrane protein 3 (LAMP3), lecithin-cholesterol acyltransferase (LCAT) and solute carrier family 2 member 1 (SLC2A1) have ever been reported to be associated with adipogenesis. Interestingly, LCAT was down-regulated and expressed along with decreased levels of mRNA methylation methylation in the low-fat group. Mechanistically, the highly expressed ALKBH5 gene regulates LCAT RNA demethylation and affects LCAT mRNA stability. In addition, LCAT inhibits preadipocyte proliferation and promotes preadipocyte differentiation, and plays a key role in adipogenesis.
In conclusion, ALKBH5 mediates RNA stability of LCAT through demethylation and affects chicken adipogenesis. This study provides a theoretical basis for further understanding of RNA methylation regulation in chicken adipogenesis.</abstract><cop>England</cop><pmid>38918701</pmid><doi>10.1186/s12864-024-10537-2</doi></addata></record> |
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subjects | Adenosine - analogs & derivatives Adenosine - metabolism Adipogenesis - genetics AlkB Homolog 5, RNA Demethylase - genetics AlkB Homolog 5, RNA Demethylase - metabolism Animals Chickens - genetics Chickens - metabolism Female Methylation Phosphatidylcholine-Sterol O-Acyltransferase - genetics Phosphatidylcholine-Sterol O-Acyltransferase - metabolism RNA Stability RNA, Messenger - genetics RNA, Messenger - metabolism |
title | ALKBH5 regulates chicken adipogenesis by mediating LCAT mRNA stability depending on m 6 A modification |
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