Interoperable workflows by exchanging grid-based data between quantum-chemical program packages
Quantum-chemical subsystem and embedding methods require complex workflows that may involve multiple quantum-chemical program packages. Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our...
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Veröffentlicht in: | The Journal of chemical physics 2024-04, Vol.160 (16) |
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container_title | The Journal of chemical physics |
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creator | Focke, Kevin De Santis, Matteo Wolter, Mario Martinez B, Jessica A. Vallet, Valérie Pereira Gomes, André Severo Olejniczak, Małgorzata Jacob, Christoph R. |
description | Quantum-chemical subsystem and embedding methods require complex workflows that may involve multiple quantum-chemical program packages. Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our approach for addressing this interoperability challenge by exchanging electron densities and embedding potentials as grid-based data. We describe the approach that we have implemented to this end in a dedicated code, PyEmbed, currently part of a Python scripting framework. We discuss how it has facilitated the development of quantum-chemical subsystem and embedding methods and highlight several applications that have been enabled by PyEmbed, including wave-function theory (WFT) in density-functional theory (DFT) embedding schemes mixing non-relativistic and relativistic electronic structure methods, real-time time-dependent DFT-in-DFT approaches, the density-based many-body expansion, and workflows including real-space data analysis and visualization. Our approach demonstrates, in particular, the merits of exchanging (complex) grid-based data and, in general, the potential of modular software development in quantum chemistry, which hinges upon libraries that facilitate interoperability. |
doi_str_mv | 10.1063/5.0201701 |
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Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our approach for addressing this interoperability challenge by exchanging electron densities and embedding potentials as grid-based data. We describe the approach that we have implemented to this end in a dedicated code, PyEmbed, currently part of a Python scripting framework. We discuss how it has facilitated the development of quantum-chemical subsystem and embedding methods and highlight several applications that have been enabled by PyEmbed, including wave-function theory (WFT) in density-functional theory (DFT) embedding schemes mixing non-relativistic and relativistic electronic structure methods, real-time time-dependent DFT-in-DFT approaches, the density-based many-body expansion, and workflows including real-space data analysis and visualization. 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Moreover, such workflows require the exchange of voluminous data that go beyond simple quantities, such as molecular structures and energies. Here, we describe our approach for addressing this interoperability challenge by exchanging electron densities and embedding potentials as grid-based data. We describe the approach that we have implemented to this end in a dedicated code, PyEmbed, currently part of a Python scripting framework. We discuss how it has facilitated the development of quantum-chemical subsystem and embedding methods and highlight several applications that have been enabled by PyEmbed, including wave-function theory (WFT) in density-functional theory (DFT) embedding schemes mixing non-relativistic and relativistic electronic structure methods, real-time time-dependent DFT-in-DFT approaches, the density-based many-body expansion, and workflows including real-space data analysis and visualization. Our approach demonstrates, in particular, the merits of exchanging (complex) grid-based data and, in general, the potential of modular software development in quantum chemistry, which hinges upon libraries that facilitate interoperability.</description><subject>Chemical Sciences</subject><subject>Data analysis</subject><subject>Density functional theory</subject><subject>Electronic structure</subject><subject>Embedding</subject><subject>Exchanging</subject><subject>Interoperability</subject><subject>Molecular structure</subject><subject>or physical chemistry</subject><subject>Packages</subject><subject>Quantum chemistry</subject><subject>Relativistic effects</subject><subject>Software development</subject><subject>Subsystems</subject><subject>Theoretical and</subject><subject>Time dependence</subject><issn>0021-9606</issn><issn>1089-7690</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNp90ctKxDAUBuAgio6XhS8gATcqVHPpLUsRbzDgQvfhND3pVNtmTFpH396OMyq4kCwCycefE35CDjk75yyVF8k5E4xnjG-QCWe5irJUsU0yYUzwSKUs3SG7ITwzNiIRb5Mdmafj4vmE6PuuR-_m6KFokC6cf7GNWwRafFB8NzPoqrqraOXrMiogYElL6IEW2C8QO_o6QNcPbWRm2NYGGjr3rvLQ0jmYF6gw7JMtC03Ag_W-Rx5vrp-u7qLpw-391eU0MjHP-siatLS5SkxmlDIiyUHkUGY8G68txBZljtaCTQpAmVhTilQlSVEiFJhzuUdOV6kzaPTc1y34D-2g1neXU708Y3EsueLibWlPVnYc9XXA0Ou2DgabBjp0Q9CSxSoTXIhspMd_6LMbfDf-40sxriSXv48b70LwaH8m4Ewv-9GJXvcz2qN14lC0WP7I70JGcLYCwdQ99LXr_kn7BAuamFo</recordid><startdate>20240428</startdate><enddate>20240428</enddate><creator>Focke, Kevin</creator><creator>De Santis, Matteo</creator><creator>Wolter, Mario</creator><creator>Martinez B, Jessica A.</creator><creator>Vallet, Valérie</creator><creator>Pereira Gomes, André Severo</creator><creator>Olejniczak, Małgorzata</creator><creator>Jacob, Christoph R.</creator><general>American Institute of Physics</general><scope>AJDQP</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8FD</scope><scope>H8D</scope><scope>L7M</scope><scope>7X8</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-9577-3449</orcidid><orcidid>https://orcid.org/0009-0009-9079-1769</orcidid><orcidid>https://orcid.org/0000-0002-8370-9570</orcidid><orcidid>https://orcid.org/0000-0002-5437-2251</orcidid><orcidid>https://orcid.org/0000-0002-6227-8476</orcidid><orcidid>https://orcid.org/0000-0002-2202-3858</orcidid><orcidid>https://orcid.org/0000-0001-6948-6801</orcidid><orcidid>https://orcid.org/0000-0001-7366-1780</orcidid></search><sort><creationdate>20240428</creationdate><title>Interoperable workflows by exchanging grid-based data between quantum-chemical program packages</title><author>Focke, Kevin ; 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subjects | Chemical Sciences Data analysis Density functional theory Electronic structure Embedding Exchanging Interoperability Molecular structure or physical chemistry Packages Quantum chemistry Relativistic effects Software development Subsystems Theoretical and Time dependence |
title | Interoperable workflows by exchanging grid-based data between quantum-chemical program packages |
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