Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany
carrying IncK- plasmids mediating resistance to extended-spectrum cephalosporins (ESC) has been frequently described in food-producing animals and in humans. This study aimed to characterize IncK- -positive ESC-resistant isolates from poultry production systems in Denmark, Finland, and Germany, as w...
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Veröffentlicht in: | Antibiotics (Basel) 2024-04, Vol.13 (4) |
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creator | Che, Meiyao Fresno, Ana Herrero Calvo-Fernandez, Cristina Hasman, Henrik Kurittu, Paula E Heikinheimo, Annamari Hansen, Lisbeth Truelstrup |
description | carrying IncK-
plasmids mediating resistance to extended-spectrum cephalosporins (ESC) has been frequently described in food-producing animals and in humans. This study aimed to characterize IncK-
-positive ESC-resistant
isolates from poultry production systems in Denmark, Finland, and Germany, as well as from Danish human blood infections, and further compare their plasmids. Whole-genome sequencing (Illumina) of all isolates (
= 46) confirmed the presence of the
gene. Minimum inhibitory concentration (MIC) testing revealed a resistant phenotype to cefotaxime as well as resistance to ≥3 antibiotic classes. Conjugative transfer of the
gene confirmed the resistance being on mobile plasmids. Pangenome analysis showed only one-third of the genes being in the core with the remainder being in the large accessory gene pool. Single nucleotide polymorphism (SNP) analysis on sequence type (ST) 429 and 1286 isolates showed between 0-60 and 13-90 SNP differences, respectively, indicating vertical transmission of closely related clones in the poultry production, including among Danish, Finnish, and German ST429 isolates. A comparison of 22 ST429 isolates from this study with 80 ST429 isolates in Enterobase revealed the widespread geographical occurrence of related isolates associated with poultry production. Long-read sequencing of a representative subset of isolates (
= 28) allowed further characterization and comparison of the IncK-
plasmids with publicly available plasmid sequences. This analysis revealed the presence of highly similar plasmids in ESC-resistant
from Denmark, Finland, and Germany pointing to the existence of common sources. Moreover, the analysis presented evidence of global plasmid transmission and evolution. Lastly, our results indicate that IncK-
plasmids and their carriers had been circulating in the Danish production chain with an associated risk of spreading to humans, as exemplified by the similarity of the clinical ST429 isolate to poultry isolates. Its persistence may be driven by co-selection since most IncK-
plasmids harbor resistance factors to drugs used in veterinary medicine. |
doi_str_mv | 10.3390/antibiotics13040349 |
format | Article |
fullrecord | <record><control><sourceid>pubmed</sourceid><recordid>TN_cdi_pubmed_primary_38667025</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>38667025</sourcerecordid><originalsourceid>FETCH-pubmed_primary_386670253</originalsourceid><addsrcrecordid>eNqFj91Kw0AQhRdRbNE-gSDzAI1usjVNrmNqiwhFvfGqbDYbMrp_7G7AvJDPaSgK3nlu5sD5ZphDyFVKbxgr6S03ERu0EUVIGV1RtipPyDyj6zLJWZGd_vEzsgjhnU4qU1bQ4pzMWJHna5rdzclXZbXjHoM1YDvYGfGYQKM4VE9vSQZ7xYPGNgAaqD-jNK1skxcnRfSDhkq6nisbnPVokmcZMMTpMaiD6KVH0SMHYRXCLljFo2yh81bD3g4q-hG4aWE7aG6O5--l0dx_LGGDRk3R8pg_SD8B4yU567gKcvEzL8j1pn6ttokbGi3bg_M4LY-H32LsX-AbHmVk-g</addsrcrecordid><sourcetype>Index Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central Open Access</source><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><creator>Che, Meiyao ; Fresno, Ana Herrero ; Calvo-Fernandez, Cristina ; Hasman, Henrik ; Kurittu, Paula E ; Heikinheimo, Annamari ; Hansen, Lisbeth Truelstrup</creator><creatorcontrib>Che, Meiyao ; Fresno, Ana Herrero ; Calvo-Fernandez, Cristina ; Hasman, Henrik ; Kurittu, Paula E ; Heikinheimo, Annamari ; Hansen, Lisbeth Truelstrup</creatorcontrib><description>carrying IncK-
plasmids mediating resistance to extended-spectrum cephalosporins (ESC) has been frequently described in food-producing animals and in humans. This study aimed to characterize IncK-
-positive ESC-resistant
isolates from poultry production systems in Denmark, Finland, and Germany, as well as from Danish human blood infections, and further compare their plasmids. Whole-genome sequencing (Illumina) of all isolates (
= 46) confirmed the presence of the
gene. Minimum inhibitory concentration (MIC) testing revealed a resistant phenotype to cefotaxime as well as resistance to ≥3 antibiotic classes. Conjugative transfer of the
gene confirmed the resistance being on mobile plasmids. Pangenome analysis showed only one-third of the genes being in the core with the remainder being in the large accessory gene pool. Single nucleotide polymorphism (SNP) analysis on sequence type (ST) 429 and 1286 isolates showed between 0-60 and 13-90 SNP differences, respectively, indicating vertical transmission of closely related clones in the poultry production, including among Danish, Finnish, and German ST429 isolates. A comparison of 22 ST429 isolates from this study with 80 ST429 isolates in Enterobase revealed the widespread geographical occurrence of related isolates associated with poultry production. Long-read sequencing of a representative subset of isolates (
= 28) allowed further characterization and comparison of the IncK-
plasmids with publicly available plasmid sequences. This analysis revealed the presence of highly similar plasmids in ESC-resistant
from Denmark, Finland, and Germany pointing to the existence of common sources. Moreover, the analysis presented evidence of global plasmid transmission and evolution. Lastly, our results indicate that IncK-
plasmids and their carriers had been circulating in the Danish production chain with an associated risk of spreading to humans, as exemplified by the similarity of the clinical ST429 isolate to poultry isolates. Its persistence may be driven by co-selection since most IncK-
plasmids harbor resistance factors to drugs used in veterinary medicine.</description><identifier>ISSN: 2079-6382</identifier><identifier>EISSN: 2079-6382</identifier><identifier>DOI: 10.3390/antibiotics13040349</identifier><identifier>PMID: 38667025</identifier><language>eng</language><publisher>Switzerland</publisher><ispartof>Antibiotics (Basel), 2024-04, Vol.13 (4)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0009-0006-5284-3589 ; 0009-0007-4471-7897 ; 0000-0003-0485-5252</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,778,782,862,27907,27908</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/38667025$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Che, Meiyao</creatorcontrib><creatorcontrib>Fresno, Ana Herrero</creatorcontrib><creatorcontrib>Calvo-Fernandez, Cristina</creatorcontrib><creatorcontrib>Hasman, Henrik</creatorcontrib><creatorcontrib>Kurittu, Paula E</creatorcontrib><creatorcontrib>Heikinheimo, Annamari</creatorcontrib><creatorcontrib>Hansen, Lisbeth Truelstrup</creatorcontrib><title>Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany</title><title>Antibiotics (Basel)</title><addtitle>Antibiotics (Basel)</addtitle><description>carrying IncK-
plasmids mediating resistance to extended-spectrum cephalosporins (ESC) has been frequently described in food-producing animals and in humans. This study aimed to characterize IncK-
-positive ESC-resistant
isolates from poultry production systems in Denmark, Finland, and Germany, as well as from Danish human blood infections, and further compare their plasmids. Whole-genome sequencing (Illumina) of all isolates (
= 46) confirmed the presence of the
gene. Minimum inhibitory concentration (MIC) testing revealed a resistant phenotype to cefotaxime as well as resistance to ≥3 antibiotic classes. Conjugative transfer of the
gene confirmed the resistance being on mobile plasmids. Pangenome analysis showed only one-third of the genes being in the core with the remainder being in the large accessory gene pool. Single nucleotide polymorphism (SNP) analysis on sequence type (ST) 429 and 1286 isolates showed between 0-60 and 13-90 SNP differences, respectively, indicating vertical transmission of closely related clones in the poultry production, including among Danish, Finnish, and German ST429 isolates. A comparison of 22 ST429 isolates from this study with 80 ST429 isolates in Enterobase revealed the widespread geographical occurrence of related isolates associated with poultry production. Long-read sequencing of a representative subset of isolates (
= 28) allowed further characterization and comparison of the IncK-
plasmids with publicly available plasmid sequences. This analysis revealed the presence of highly similar plasmids in ESC-resistant
from Denmark, Finland, and Germany pointing to the existence of common sources. Moreover, the analysis presented evidence of global plasmid transmission and evolution. Lastly, our results indicate that IncK-
plasmids and their carriers had been circulating in the Danish production chain with an associated risk of spreading to humans, as exemplified by the similarity of the clinical ST429 isolate to poultry isolates. Its persistence may be driven by co-selection since most IncK-
plasmids harbor resistance factors to drugs used in veterinary medicine.</description><issn>2079-6382</issn><issn>2079-6382</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2024</creationdate><recordtype>article</recordtype><recordid>eNqFj91Kw0AQhRdRbNE-gSDzAI1usjVNrmNqiwhFvfGqbDYbMrp_7G7AvJDPaSgK3nlu5sD5ZphDyFVKbxgr6S03ERu0EUVIGV1RtipPyDyj6zLJWZGd_vEzsgjhnU4qU1bQ4pzMWJHna5rdzclXZbXjHoM1YDvYGfGYQKM4VE9vSQZ7xYPGNgAaqD-jNK1skxcnRfSDhkq6nisbnPVokmcZMMTpMaiD6KVH0SMHYRXCLljFo2yh81bD3g4q-hG4aWE7aG6O5--l0dx_LGGDRk3R8pg_SD8B4yU567gKcvEzL8j1pn6ttokbGi3bg_M4LY-H32LsX-AbHmVk-g</recordid><startdate>20240410</startdate><enddate>20240410</enddate><creator>Che, Meiyao</creator><creator>Fresno, Ana Herrero</creator><creator>Calvo-Fernandez, Cristina</creator><creator>Hasman, Henrik</creator><creator>Kurittu, Paula E</creator><creator>Heikinheimo, Annamari</creator><creator>Hansen, Lisbeth Truelstrup</creator><scope>NPM</scope><orcidid>https://orcid.org/0009-0006-5284-3589</orcidid><orcidid>https://orcid.org/0009-0007-4471-7897</orcidid><orcidid>https://orcid.org/0000-0003-0485-5252</orcidid></search><sort><creationdate>20240410</creationdate><title>Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany</title><author>Che, Meiyao ; Fresno, Ana Herrero ; Calvo-Fernandez, Cristina ; Hasman, Henrik ; Kurittu, Paula E ; Heikinheimo, Annamari ; Hansen, Lisbeth Truelstrup</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-pubmed_primary_386670253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2024</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Che, Meiyao</creatorcontrib><creatorcontrib>Fresno, Ana Herrero</creatorcontrib><creatorcontrib>Calvo-Fernandez, Cristina</creatorcontrib><creatorcontrib>Hasman, Henrik</creatorcontrib><creatorcontrib>Kurittu, Paula E</creatorcontrib><creatorcontrib>Heikinheimo, Annamari</creatorcontrib><creatorcontrib>Hansen, Lisbeth Truelstrup</creatorcontrib><collection>PubMed</collection><jtitle>Antibiotics (Basel)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Che, Meiyao</au><au>Fresno, Ana Herrero</au><au>Calvo-Fernandez, Cristina</au><au>Hasman, Henrik</au><au>Kurittu, Paula E</au><au>Heikinheimo, Annamari</au><au>Hansen, Lisbeth Truelstrup</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany</atitle><jtitle>Antibiotics (Basel)</jtitle><addtitle>Antibiotics (Basel)</addtitle><date>2024-04-10</date><risdate>2024</risdate><volume>13</volume><issue>4</issue><issn>2079-6382</issn><eissn>2079-6382</eissn><abstract>carrying IncK-
plasmids mediating resistance to extended-spectrum cephalosporins (ESC) has been frequently described in food-producing animals and in humans. This study aimed to characterize IncK-
-positive ESC-resistant
isolates from poultry production systems in Denmark, Finland, and Germany, as well as from Danish human blood infections, and further compare their plasmids. Whole-genome sequencing (Illumina) of all isolates (
= 46) confirmed the presence of the
gene. Minimum inhibitory concentration (MIC) testing revealed a resistant phenotype to cefotaxime as well as resistance to ≥3 antibiotic classes. Conjugative transfer of the
gene confirmed the resistance being on mobile plasmids. Pangenome analysis showed only one-third of the genes being in the core with the remainder being in the large accessory gene pool. Single nucleotide polymorphism (SNP) analysis on sequence type (ST) 429 and 1286 isolates showed between 0-60 and 13-90 SNP differences, respectively, indicating vertical transmission of closely related clones in the poultry production, including among Danish, Finnish, and German ST429 isolates. A comparison of 22 ST429 isolates from this study with 80 ST429 isolates in Enterobase revealed the widespread geographical occurrence of related isolates associated with poultry production. Long-read sequencing of a representative subset of isolates (
= 28) allowed further characterization and comparison of the IncK-
plasmids with publicly available plasmid sequences. This analysis revealed the presence of highly similar plasmids in ESC-resistant
from Denmark, Finland, and Germany pointing to the existence of common sources. Moreover, the analysis presented evidence of global plasmid transmission and evolution. Lastly, our results indicate that IncK-
plasmids and their carriers had been circulating in the Danish production chain with an associated risk of spreading to humans, as exemplified by the similarity of the clinical ST429 isolate to poultry isolates. Its persistence may be driven by co-selection since most IncK-
plasmids harbor resistance factors to drugs used in veterinary medicine.</abstract><cop>Switzerland</cop><pmid>38667025</pmid><doi>10.3390/antibiotics13040349</doi><orcidid>https://orcid.org/0009-0006-5284-3589</orcidid><orcidid>https://orcid.org/0009-0007-4471-7897</orcidid><orcidid>https://orcid.org/0000-0003-0485-5252</orcidid></addata></record> |
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title | Comparison of IncK- bla CMY-2 Plasmids in Extended-Spectrum Cephalosporin-Resistant Escherichia coli Isolated from Poultry and Humans in Denmark, Finland, and Germany |
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