Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed

Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, As...

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Veröffentlicht in:Cell genomics 2022-01, Vol.2 (1), p.100084
Hauptverfasser: Taub, Margaret A, Conomos, Matthew P, Keener, Rebecca, Iyer, Kruthika R, Weinstock, Joshua S, Yanek, Lisa R, Lane, John, Miller-Fleming, Tyne W, Brody, Jennifer A, Raffield, Laura M, McHugh, Caitlin P, Jain, Deepti, Gogarten, Stephanie M, Laurie, Cecelia A, Keramati, Ali, Arvanitis, Marios, Smith, Albert V, Heavner, Benjamin, Barwick, Lucas, Becker, Lewis C, Bis, Joshua C, Blangero, John, Bleecker, Eugene R, Burchard, Esteban G, Celedón, Juan C, Chang, Yen Pei C, Custer, Brian, Darbar, Dawood, de Las Fuentes, Lisa, DeMeo, Dawn L, Freedman, Barry I, Garrett, Melanie E, Gladwin, Mark T, Heckbert, Susan R, Hidalgo, Bertha A, Irvin, Marguerite R, Islam, Talat, Johnson, W Craig, Kaab, Stefan, Launer, Lenore, Lee, Jiwon, Liu, Simin, Moscati, Arden, North, Kari E, Peyser, Patricia A, Rafaels, Nicholas, Seidman, Christine, Weeks, Daniel E, Wen, Fayun, Wheeler, Marsha M, Williams, L Keoki, Yang, Ivana V, Zhao, Wei, Aslibekyan, Stella, Auer, Paul L, Bowden, Donald W, Cade, Brian E, Chen, Zhanghua, Cho, Michael H, Cupples, L Adrienne, Curran, Joanne E, Daya, Michelle, Deka, Ranjan, Eng, Celeste, Fingerlin, Tasha E, Guo, Xiuqing, Hou, Lifang, Hwang, Shih-Jen, Johnsen, Jill M, Kenny, Eimear E, Levin, Albert M, Liu, Chunyu, Minster, Ryan L, Naseri, Take, Nouraie, Mehdi, Reupena, Muagututi'a Sefuiva, Sabino, Ester C, Smith, Jennifer A, Smith, Nicholas L, Lasky-Su, Jessica, Taylor, 6th, James G, Telen, Marilyn J, Tiwari, Hemant K, Tracy, Russell P, White, Marquitta J, Zhang, Yingze, Wiggins, Kerri L, Weiss, Scott T, Vasan, Ramachandran S, Taylor, Kent D, Sinner, Moritz F, Silverman, Edwin K, Shoemaker, M Benjamin, Sheu, Wayne H-H, Sciurba, Frank, Schwartz, David A, Rotter, Jerome I, Roden, Daniel, Redline, Susan, Raby, Benjamin A
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container_title Cell genomics
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creator Taub, Margaret A
Conomos, Matthew P
Keener, Rebecca
Iyer, Kruthika R
Weinstock, Joshua S
Yanek, Lisa R
Lane, John
Miller-Fleming, Tyne W
Brody, Jennifer A
Raffield, Laura M
McHugh, Caitlin P
Jain, Deepti
Gogarten, Stephanie M
Laurie, Cecelia A
Keramati, Ali
Arvanitis, Marios
Smith, Albert V
Heavner, Benjamin
Barwick, Lucas
Becker, Lewis C
Bis, Joshua C
Blangero, John
Bleecker, Eugene R
Burchard, Esteban G
Celedón, Juan C
Chang, Yen Pei C
Custer, Brian
Darbar, Dawood
de Las Fuentes, Lisa
DeMeo, Dawn L
Freedman, Barry I
Garrett, Melanie E
Gladwin, Mark T
Heckbert, Susan R
Hidalgo, Bertha A
Irvin, Marguerite R
Islam, Talat
Johnson, W Craig
Kaab, Stefan
Launer, Lenore
Lee, Jiwon
Liu, Simin
Moscati, Arden
North, Kari E
Peyser, Patricia A
Rafaels, Nicholas
Seidman, Christine
Weeks, Daniel E
Wen, Fayun
Wheeler, Marsha M
Williams, L Keoki
Yang, Ivana V
Zhao, Wei
Aslibekyan, Stella
Auer, Paul L
Bowden, Donald W
Cade, Brian E
Chen, Zhanghua
Cho, Michael H
Cupples, L Adrienne
Curran, Joanne E
Daya, Michelle
Deka, Ranjan
Eng, Celeste
Fingerlin, Tasha E
Guo, Xiuqing
Hou, Lifang
Hwang, Shih-Jen
Johnsen, Jill M
Kenny, Eimear E
Levin, Albert M
Liu, Chunyu
Minster, Ryan L
Naseri, Take
Nouraie, Mehdi
Reupena, Muagututi'a Sefuiva
Sabino, Ester C
Smith, Jennifer A
Smith, Nicholas L
Lasky-Su, Jessica
Taylor, 6th, James G
Telen, Marilyn J
Tiwari, Hemant K
Tracy, Russell P
White, Marquitta J
Zhang, Yingze
Wiggins, Kerri L
Weiss, Scott T
Vasan, Ramachandran S
Taylor, Kent D
Sinner, Moritz F
Silverman, Edwin K
Shoemaker, M Benjamin
Sheu, Wayne H-H
Sciurba, Frank
Schwartz, David A
Rotter, Jerome I
Roden, Daniel
Redline, Susan
Raby, Benjamin A
description Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, Asian, and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole-genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n = 109,122 individuals. We identified 59 sentinel variants (p < 5 × 10 ) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated that the independent signals colocalized with cell-type-specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated that our TL polygenic trait scores (PTSs) were associated with an increased risk of cancer-related phenotypes.
doi_str_mv 10.1016/j.xgen.2021.100084
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Martinez on behalf of the NHLBI CARE Network ; TOPMed Structural Variation Working Group ; NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium</creatorcontrib><description>Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, Asian, and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole-genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n = 109,122 individuals. We identified 59 sentinel variants (p &lt; 5 × 10 ) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated that the independent signals colocalized with cell-type-specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated that our TL polygenic trait scores (PTSs) were associated with an increased risk of cancer-related phenotypes.</description><identifier>EISSN: 2666-979X</identifier><identifier>DOI: 10.1016/j.xgen.2021.100084</identifier><identifier>PMID: 38170873</identifier><language>eng</language><publisher>United States</publisher><ispartof>Cell genomics, 2022-01, Vol.2 (1), p.100084</ispartof><rights>Copyright © 2021. 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Martinez on behalf of the NHLBI CARE Network</creatorcontrib><creatorcontrib>TOPMed Structural Variation Working Group</creatorcontrib><creatorcontrib>NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium</creatorcontrib><title>Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed</title><title>Cell genomics</title><addtitle>Cell Genom</addtitle><description>Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, Asian, and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole-genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n = 109,122 individuals. We identified 59 sentinel variants (p &lt; 5 × 10 ) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated that the independent signals colocalized with cell-type-specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. 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Garrett, Melanie E ; Gladwin, Mark T ; Heckbert, Susan R ; Hidalgo, Bertha A ; Irvin, Marguerite R ; Islam, Talat ; Johnson, W Craig ; Kaab, Stefan ; Launer, Lenore ; Lee, Jiwon ; Liu, Simin ; Moscati, Arden ; North, Kari E ; Peyser, Patricia A ; Rafaels, Nicholas ; Seidman, Christine ; Weeks, Daniel E ; Wen, Fayun ; Wheeler, Marsha M ; Williams, L Keoki ; Yang, Ivana V ; Zhao, Wei ; Aslibekyan, Stella ; Auer, Paul L ; Bowden, Donald W ; Cade, Brian E ; Chen, Zhanghua ; Cho, Michael H ; Cupples, L Adrienne ; Curran, Joanne E ; Daya, Michelle ; Deka, Ranjan ; Eng, Celeste ; Fingerlin, Tasha E ; Guo, Xiuqing ; Hou, Lifang ; Hwang, Shih-Jen ; Johnsen, Jill M ; Kenny, Eimear E ; Levin, Albert M ; Liu, Chunyu ; Minster, Ryan L ; Naseri, Take ; Nouraie, Mehdi ; Reupena, Muagututi'a Sefuiva ; Sabino, Ester C ; Smith, Jennifer A ; Smith, Nicholas L ; Lasky-Su, Jessica ; Taylor, 6th, James G ; Telen, Marilyn J ; Tiwari, Hemant K ; Tracy, Russell P ; White, Marquitta J ; Zhang, Yingze ; Wiggins, Kerri L ; Weiss, Scott T ; Vasan, Ramachandran S ; Taylor, Kent D ; Sinner, Moritz F ; Silverman, Edwin K ; Shoemaker, M Benjamin ; Sheu, Wayne H-H ; Sciurba, Frank ; Schwartz, David A ; Rotter, Jerome I ; Roden, Daniel ; Redline, Susan ; Raby, Benjamin A</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p108t-d3cd2f2c26c08e9e5c89c905f9f57022a4447b059462514c4e9cdc04422080ba3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Taub, Margaret A</creatorcontrib><creatorcontrib>Conomos, Matthew P</creatorcontrib><creatorcontrib>Keener, Rebecca</creatorcontrib><creatorcontrib>Iyer, Kruthika R</creatorcontrib><creatorcontrib>Weinstock, Joshua S</creatorcontrib><creatorcontrib>Yanek, Lisa R</creatorcontrib><creatorcontrib>Lane, John</creatorcontrib><creatorcontrib>Miller-Fleming, Tyne W</creatorcontrib><creatorcontrib>Brody, Jennifer A</creatorcontrib><creatorcontrib>Raffield, Laura M</creatorcontrib><creatorcontrib>McHugh, Caitlin P</creatorcontrib><creatorcontrib>Jain, Deepti</creatorcontrib><creatorcontrib>Gogarten, Stephanie M</creatorcontrib><creatorcontrib>Laurie, Cecelia A</creatorcontrib><creatorcontrib>Keramati, Ali</creatorcontrib><creatorcontrib>Arvanitis, Marios</creatorcontrib><creatorcontrib>Smith, Albert V</creatorcontrib><creatorcontrib>Heavner, Benjamin</creatorcontrib><creatorcontrib>Barwick, Lucas</creatorcontrib><creatorcontrib>Becker, Lewis C</creatorcontrib><creatorcontrib>Bis, Joshua C</creatorcontrib><creatorcontrib>Blangero, John</creatorcontrib><creatorcontrib>Bleecker, Eugene R</creatorcontrib><creatorcontrib>Burchard, Esteban G</creatorcontrib><creatorcontrib>Celedón, Juan C</creatorcontrib><creatorcontrib>Chang, Yen Pei C</creatorcontrib><creatorcontrib>Custer, Brian</creatorcontrib><creatorcontrib>Darbar, Dawood</creatorcontrib><creatorcontrib>de Las Fuentes, Lisa</creatorcontrib><creatorcontrib>DeMeo, Dawn L</creatorcontrib><creatorcontrib>Freedman, Barry I</creatorcontrib><creatorcontrib>Garrett, Melanie E</creatorcontrib><creatorcontrib>Gladwin, Mark T</creatorcontrib><creatorcontrib>Heckbert, Susan R</creatorcontrib><creatorcontrib>Hidalgo, Bertha A</creatorcontrib><creatorcontrib>Irvin, Marguerite R</creatorcontrib><creatorcontrib>Islam, Talat</creatorcontrib><creatorcontrib>Johnson, W Craig</creatorcontrib><creatorcontrib>Kaab, Stefan</creatorcontrib><creatorcontrib>Launer, Lenore</creatorcontrib><creatorcontrib>Lee, Jiwon</creatorcontrib><creatorcontrib>Liu, Simin</creatorcontrib><creatorcontrib>Moscati, Arden</creatorcontrib><creatorcontrib>North, Kari E</creatorcontrib><creatorcontrib>Peyser, Patricia A</creatorcontrib><creatorcontrib>Rafaels, Nicholas</creatorcontrib><creatorcontrib>Seidman, Christine</creatorcontrib><creatorcontrib>Weeks, Daniel E</creatorcontrib><creatorcontrib>Wen, Fayun</creatorcontrib><creatorcontrib>Wheeler, Marsha M</creatorcontrib><creatorcontrib>Williams, L Keoki</creatorcontrib><creatorcontrib>Yang, Ivana V</creatorcontrib><creatorcontrib>Zhao, Wei</creatorcontrib><creatorcontrib>Aslibekyan, Stella</creatorcontrib><creatorcontrib>Auer, Paul L</creatorcontrib><creatorcontrib>Bowden, Donald W</creatorcontrib><creatorcontrib>Cade, Brian E</creatorcontrib><creatorcontrib>Chen, Zhanghua</creatorcontrib><creatorcontrib>Cho, Michael H</creatorcontrib><creatorcontrib>Cupples, L Adrienne</creatorcontrib><creatorcontrib>Curran, Joanne E</creatorcontrib><creatorcontrib>Daya, Michelle</creatorcontrib><creatorcontrib>Deka, Ranjan</creatorcontrib><creatorcontrib>Eng, Celeste</creatorcontrib><creatorcontrib>Fingerlin, Tasha E</creatorcontrib><creatorcontrib>Guo, Xiuqing</creatorcontrib><creatorcontrib>Hou, Lifang</creatorcontrib><creatorcontrib>Hwang, Shih-Jen</creatorcontrib><creatorcontrib>Johnsen, Jill M</creatorcontrib><creatorcontrib>Kenny, Eimear E</creatorcontrib><creatorcontrib>Levin, Albert M</creatorcontrib><creatorcontrib>Liu, Chunyu</creatorcontrib><creatorcontrib>Minster, Ryan L</creatorcontrib><creatorcontrib>Naseri, Take</creatorcontrib><creatorcontrib>Nouraie, Mehdi</creatorcontrib><creatorcontrib>Reupena, Muagututi'a Sefuiva</creatorcontrib><creatorcontrib>Sabino, Ester C</creatorcontrib><creatorcontrib>Smith, Jennifer A</creatorcontrib><creatorcontrib>Smith, Nicholas L</creatorcontrib><creatorcontrib>Lasky-Su, Jessica</creatorcontrib><creatorcontrib>Taylor, 6th, James G</creatorcontrib><creatorcontrib>Telen, Marilyn J</creatorcontrib><creatorcontrib>Tiwari, Hemant K</creatorcontrib><creatorcontrib>Tracy, Russell P</creatorcontrib><creatorcontrib>White, Marquitta J</creatorcontrib><creatorcontrib>Zhang, Yingze</creatorcontrib><creatorcontrib>Wiggins, Kerri L</creatorcontrib><creatorcontrib>Weiss, Scott T</creatorcontrib><creatorcontrib>Vasan, Ramachandran S</creatorcontrib><creatorcontrib>Taylor, Kent D</creatorcontrib><creatorcontrib>Sinner, Moritz F</creatorcontrib><creatorcontrib>Silverman, Edwin K</creatorcontrib><creatorcontrib>Shoemaker, M Benjamin</creatorcontrib><creatorcontrib>Sheu, Wayne H-H</creatorcontrib><creatorcontrib>Sciurba, Frank</creatorcontrib><creatorcontrib>Schwartz, David A</creatorcontrib><creatorcontrib>Rotter, Jerome I</creatorcontrib><creatorcontrib>Roden, Daniel</creatorcontrib><creatorcontrib>Redline, Susan</creatorcontrib><creatorcontrib>Raby, Benjamin A</creatorcontrib><creatorcontrib>TOPMed Hematology and Hemostasis Working Group</creatorcontrib><creatorcontrib>Fernando D. Martinez on behalf of the NHLBI CARE Network</creatorcontrib><creatorcontrib>TOPMed Structural Variation Working Group</creatorcontrib><creatorcontrib>NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium</creatorcontrib><collection>PubMed</collection><jtitle>Cell genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Taub, Margaret A</au><au>Conomos, Matthew P</au><au>Keener, Rebecca</au><au>Iyer, Kruthika R</au><au>Weinstock, Joshua S</au><au>Yanek, Lisa R</au><au>Lane, John</au><au>Miller-Fleming, Tyne W</au><au>Brody, Jennifer A</au><au>Raffield, Laura M</au><au>McHugh, Caitlin P</au><au>Jain, Deepti</au><au>Gogarten, Stephanie M</au><au>Laurie, Cecelia A</au><au>Keramati, Ali</au><au>Arvanitis, Marios</au><au>Smith, Albert V</au><au>Heavner, Benjamin</au><au>Barwick, Lucas</au><au>Becker, Lewis C</au><au>Bis, Joshua C</au><au>Blangero, John</au><au>Bleecker, Eugene R</au><au>Burchard, Esteban G</au><au>Celedón, Juan C</au><au>Chang, Yen Pei C</au><au>Custer, Brian</au><au>Darbar, Dawood</au><au>de Las Fuentes, Lisa</au><au>DeMeo, Dawn L</au><au>Freedman, Barry I</au><au>Garrett, Melanie E</au><au>Gladwin, Mark T</au><au>Heckbert, Susan R</au><au>Hidalgo, Bertha A</au><au>Irvin, Marguerite R</au><au>Islam, Talat</au><au>Johnson, W Craig</au><au>Kaab, Stefan</au><au>Launer, Lenore</au><au>Lee, Jiwon</au><au>Liu, Simin</au><au>Moscati, Arden</au><au>North, Kari E</au><au>Peyser, Patricia A</au><au>Rafaels, Nicholas</au><au>Seidman, Christine</au><au>Weeks, Daniel E</au><au>Wen, Fayun</au><au>Wheeler, Marsha M</au><au>Williams, L Keoki</au><au>Yang, Ivana V</au><au>Zhao, Wei</au><au>Aslibekyan, Stella</au><au>Auer, Paul L</au><au>Bowden, Donald W</au><au>Cade, Brian E</au><au>Chen, Zhanghua</au><au>Cho, Michael H</au><au>Cupples, L Adrienne</au><au>Curran, Joanne E</au><au>Daya, Michelle</au><au>Deka, Ranjan</au><au>Eng, Celeste</au><au>Fingerlin, Tasha E</au><au>Guo, Xiuqing</au><au>Hou, Lifang</au><au>Hwang, Shih-Jen</au><au>Johnsen, Jill M</au><au>Kenny, Eimear E</au><au>Levin, Albert M</au><au>Liu, Chunyu</au><au>Minster, Ryan L</au><au>Naseri, Take</au><au>Nouraie, Mehdi</au><au>Reupena, Muagututi'a Sefuiva</au><au>Sabino, Ester C</au><au>Smith, Jennifer A</au><au>Smith, Nicholas L</au><au>Lasky-Su, Jessica</au><au>Taylor, 6th, James G</au><au>Telen, Marilyn J</au><au>Tiwari, Hemant K</au><au>Tracy, Russell P</au><au>White, Marquitta J</au><au>Zhang, Yingze</au><au>Wiggins, Kerri L</au><au>Weiss, Scott T</au><au>Vasan, Ramachandran S</au><au>Taylor, Kent D</au><au>Sinner, Moritz F</au><au>Silverman, Edwin K</au><au>Shoemaker, M Benjamin</au><au>Sheu, Wayne H-H</au><au>Sciurba, Frank</au><au>Schwartz, David A</au><au>Rotter, Jerome I</au><au>Roden, Daniel</au><au>Redline, Susan</au><au>Raby, Benjamin A</au><aucorp>TOPMed Hematology and Hemostasis Working Group</aucorp><aucorp>Fernando D. Martinez on behalf of the NHLBI CARE Network</aucorp><aucorp>TOPMed Structural Variation Working Group</aucorp><aucorp>NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed</atitle><jtitle>Cell genomics</jtitle><addtitle>Cell Genom</addtitle><date>2022-01-12</date><risdate>2022</risdate><volume>2</volume><issue>1</issue><spage>100084</spage><pages>100084-</pages><eissn>2666-979X</eissn><abstract>Genetic studies on telomere length are important for understanding age-related diseases. Prior GWASs for leukocyte TL have been limited to European and Asian populations. Here, we report the first sequencing-based association study for TL across ancestrally diverse individuals (European, African, Asian, and Hispanic/Latino) from the NHLBI Trans-Omics for Precision Medicine (TOPMed) program. We used whole-genome sequencing (WGS) of whole blood for variant genotype calling and the bioinformatic estimation of telomere length in n = 109,122 individuals. We identified 59 sentinel variants (p &lt; 5 × 10 ) in 36 loci associated with telomere length, including 20 newly associated loci (13 were replicated in external datasets). There was little evidence of effect size heterogeneity across populations. Fine-mapping at OBFC1 indicated that the independent signals colocalized with cell-type-specific eQTLs for OBFC1 (STN1). Using a multi-variant gene-based approach, we identified two genes newly implicated in telomere length, DCLRE1B (SNM1B) and PARN. In PheWAS, we demonstrated that our TL polygenic trait scores (PTSs) were associated with an increased risk of cancer-related phenotypes.</abstract><cop>United States</cop><pmid>38170873</pmid><doi>10.1016/j.xgen.2021.100084</doi><oa>free_for_read</oa></addata></record>
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title Genetic determinants of telomere length from 109,122 ancestrally diverse whole-genome sequences in TOPMed
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