Semantic-Powered Explainable Model-Free Few-Shot Learning Scheme of Diagnosing COVID-19 on Chest X-Ray
Chest X-ray (CXR) is commonly performed as an initial investigation in COVID-19, whose fast and accurate diagnosis is critical. Recently, deep learning has a great potential in detecting people who are suspected to be infected with COVID-19. However, deep learning resulting with black-box models, wh...
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Veröffentlicht in: | IEEE journal of biomedical and health informatics 2022-12, Vol.26 (12), p.5870-5882 |
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creator | Wang, Yihang Jiang, Chunjuan Wu, Youqing Lv, Tianxu Sun, Heng Liu, Yuan Li, Lihua Pan, Xiang |
description | Chest X-ray (CXR) is commonly performed as an initial investigation in COVID-19, whose fast and accurate diagnosis is critical. Recently, deep learning has a great potential in detecting people who are suspected to be infected with COVID-19. However, deep learning resulting with black-box models, which often breaks down when forced to make predictions about data for which limited supervised information is available and lack inter-pretability, still is a major barrier for clinical integration. In this work, we hereby propose a semantic-powered explainable model-free few-shot learning scheme to quickly and precisely diagnose COVID-19 with higher reliability and transparency. Specifically, we design a Report Image Explanation Cell (RIEC) to exploit clinically indicators derived from radiology reports as interpretable driver to introduce prior knowledge at training. Meanwhile, multi-task collaborative diagnosis strategy (MCDS) is developed to construct {\boldsymbol{N}}-way {\boldsymbol{K}}-shot tasks, which adopts a cyclic and collaborative training approach for producing better generalization performance on new tasks. Extensive experiments demonstrate that the proposed scheme achieves competitive results (accuracy of 98.91%, precision of 98.95%, recall of 97.94% and F1-score of 98.57%) to diagnose COVID-19 and other pneumonia infected categories, even with only 200 paired CXR images and radiology reports for training. Furthermore, statistical results of comparative experiments show that our scheme provides an interpretable window into the COVID-19 diagnosis to improve the performance of the small sample size, the reliability and transparency of black-box deep learning models. Our source codes will be released on https://github.com/AI-medical-diagnosis-team-of-JNU/SPEMFSL-Diagnosis-COVID-19 . |
doi_str_mv | 10.1109/JBHI.2022.3205167 |
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Recently, deep learning has a great potential in detecting people who are suspected to be infected with COVID-19. However, deep learning resulting with black-box models, which often breaks down when forced to make predictions about data for which limited supervised information is available and lack inter-pretability, still is a major barrier for clinical integration. In this work, we hereby propose a semantic-powered explainable model-free few-shot learning scheme to quickly and precisely diagnose COVID-19 with higher reliability and transparency. Specifically, we design a Report Image Explanation Cell (RIEC) to exploit clinically indicators derived from radiology reports as interpretable driver to introduce prior knowledge at training. Meanwhile, multi-task collaborative diagnosis strategy (MCDS) is developed to construct <inline-formula><tex-math notation="LaTeX">{\boldsymbol{N}}</tex-math></inline-formula>-way <inline-formula><tex-math notation="LaTeX">{\boldsymbol{K}}</tex-math></inline-formula>-shot tasks, which adopts a cyclic and collaborative training approach for producing better generalization performance on new tasks. Extensive experiments demonstrate that the proposed scheme achieves competitive results (accuracy of 98.91%, precision of 98.95%, recall of 97.94% and F1-score of 98.57%) to diagnose COVID-19 and other pneumonia infected categories, even with only 200 paired CXR images and radiology reports for training. Furthermore, statistical results of comparative experiments show that our scheme provides an interpretable window into the COVID-19 diagnosis to improve the performance of the small sample size, the reliability and transparency of black-box deep learning models. Our source codes will be released on https://github.com/AI-medical-diagnosis-team-of-JNU/SPEMFSL-Diagnosis-COVID-19 .]]></description><identifier>ISSN: 2168-2194</identifier><identifier>EISSN: 2168-2208</identifier><identifier>DOI: 10.1109/JBHI.2022.3205167</identifier><identifier>PMID: 36074872</identifier><identifier>CODEN: IJBHA9</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Artificial intelligence ; Chest ; Chest X-ray ; Collaboration ; Coronaviruses ; COVID-19 ; COVID-19 - diagnostic imaging ; COVID-19 Testing ; Deep Learning ; Diagnosis ; explainable AI ; few-shot learning ; Humans ; Mathematical models ; Medical diagnosis ; Medical diagnostic imaging ; Medical imaging ; Neural Networks, Computer ; Performance enhancement ; Pulmonary diseases ; Radiography, Thoracic - methods ; Radiology ; Reliability ; Reproducibility of Results ; SARS-CoV-2 ; semantic-powered ; Semantics ; Training ; X-Rays</subject><ispartof>IEEE journal of biomedical and health informatics, 2022-12, Vol.26 (12), p.5870-5882</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. 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Recently, deep learning has a great potential in detecting people who are suspected to be infected with COVID-19. However, deep learning resulting with black-box models, which often breaks down when forced to make predictions about data for which limited supervised information is available and lack inter-pretability, still is a major barrier for clinical integration. In this work, we hereby propose a semantic-powered explainable model-free few-shot learning scheme to quickly and precisely diagnose COVID-19 with higher reliability and transparency. Specifically, we design a Report Image Explanation Cell (RIEC) to exploit clinically indicators derived from radiology reports as interpretable driver to introduce prior knowledge at training. Meanwhile, multi-task collaborative diagnosis strategy (MCDS) is developed to construct <inline-formula><tex-math notation="LaTeX">{\boldsymbol{N}}</tex-math></inline-formula>-way <inline-formula><tex-math notation="LaTeX">{\boldsymbol{K}}</tex-math></inline-formula>-shot tasks, which adopts a cyclic and collaborative training approach for producing better generalization performance on new tasks. Extensive experiments demonstrate that the proposed scheme achieves competitive results (accuracy of 98.91%, precision of 98.95%, recall of 97.94% and F1-score of 98.57%) to diagnose COVID-19 and other pneumonia infected categories, even with only 200 paired CXR images and radiology reports for training. Furthermore, statistical results of comparative experiments show that our scheme provides an interpretable window into the COVID-19 diagnosis to improve the performance of the small sample size, the reliability and transparency of black-box deep learning models. Our source codes will be released on https://github.com/AI-medical-diagnosis-team-of-JNU/SPEMFSL-Diagnosis-COVID-19 .]]></description><subject>Artificial intelligence</subject><subject>Chest</subject><subject>Chest X-ray</subject><subject>Collaboration</subject><subject>Coronaviruses</subject><subject>COVID-19</subject><subject>COVID-19 - diagnostic imaging</subject><subject>COVID-19 Testing</subject><subject>Deep Learning</subject><subject>Diagnosis</subject><subject>explainable AI</subject><subject>few-shot learning</subject><subject>Humans</subject><subject>Mathematical models</subject><subject>Medical diagnosis</subject><subject>Medical diagnostic imaging</subject><subject>Medical imaging</subject><subject>Neural Networks, Computer</subject><subject>Performance enhancement</subject><subject>Pulmonary diseases</subject><subject>Radiography, Thoracic - methods</subject><subject>Radiology</subject><subject>Reliability</subject><subject>Reproducibility of Results</subject><subject>SARS-CoV-2</subject><subject>semantic-powered</subject><subject>Semantics</subject><subject>Training</subject><subject>X-Rays</subject><issn>2168-2194</issn><issn>2168-2208</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNpdkU1PwzAMhiMEggn4AQgJReLCJSNJk7Q5wmBsaAjEAHGr0tZlndpmJJtg_55M-zjgiy378Yf8InTGaJcxqq8fbwfDLqecdyNOJVPxHupwphLCOU32tzHT4gidej-lwZKQ0uoQHUWKxiKJeQeVY2hMO69y8mJ_wEGB739ntalak9WAn2wBNek7ANyHHzKe2DkegXFt1X7hcT6BBrAt8V1lvlrrV8ne88fwjjCNbYt7E_Bz_ElezfIEHZSm9nC68cfovX__1huQ0fPDsHczInkk9JxIZTIoyiw3QlDFC0WZgUjKLC64kDICnWvQMUgoM1EKLYsMEm1YqKvMsCI6RlfruTNnvxdhfdpUPoe6Ni3YhU95zHgiw4NUQC__oVO7cG24LlAiVlQLRQPF1lTurPcOynTmqsa4ZcpoutIhXemQrnRINzqEnovN5EXWQLHr2H49AOdroAKAXVknCYs1j_4AKXGKCA</recordid><startdate>20221201</startdate><enddate>20221201</enddate><creator>Wang, Yihang</creator><creator>Jiang, Chunjuan</creator><creator>Wu, Youqing</creator><creator>Lv, Tianxu</creator><creator>Sun, Heng</creator><creator>Liu, Yuan</creator><creator>Li, Lihua</creator><creator>Pan, Xiang</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. 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Recently, deep learning has a great potential in detecting people who are suspected to be infected with COVID-19. However, deep learning resulting with black-box models, which often breaks down when forced to make predictions about data for which limited supervised information is available and lack inter-pretability, still is a major barrier for clinical integration. In this work, we hereby propose a semantic-powered explainable model-free few-shot learning scheme to quickly and precisely diagnose COVID-19 with higher reliability and transparency. Specifically, we design a Report Image Explanation Cell (RIEC) to exploit clinically indicators derived from radiology reports as interpretable driver to introduce prior knowledge at training. Meanwhile, multi-task collaborative diagnosis strategy (MCDS) is developed to construct <inline-formula><tex-math notation="LaTeX">{\boldsymbol{N}}</tex-math></inline-formula>-way <inline-formula><tex-math notation="LaTeX">{\boldsymbol{K}}</tex-math></inline-formula>-shot tasks, which adopts a cyclic and collaborative training approach for producing better generalization performance on new tasks. Extensive experiments demonstrate that the proposed scheme achieves competitive results (accuracy of 98.91%, precision of 98.95%, recall of 97.94% and F1-score of 98.57%) to diagnose COVID-19 and other pneumonia infected categories, even with only 200 paired CXR images and radiology reports for training. Furthermore, statistical results of comparative experiments show that our scheme provides an interpretable window into the COVID-19 diagnosis to improve the performance of the small sample size, the reliability and transparency of black-box deep learning models. Our source codes will be released on https://github.com/AI-medical-diagnosis-team-of-JNU/SPEMFSL-Diagnosis-COVID-19 .]]></abstract><cop>United States</cop><pub>IEEE</pub><pmid>36074872</pmid><doi>10.1109/JBHI.2022.3205167</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0003-0435-6453</orcidid><orcidid>https://orcid.org/0000-0001-7682-2463</orcidid></addata></record> |
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subjects | Artificial intelligence Chest Chest X-ray Collaboration Coronaviruses COVID-19 COVID-19 - diagnostic imaging COVID-19 Testing Deep Learning Diagnosis explainable AI few-shot learning Humans Mathematical models Medical diagnosis Medical diagnostic imaging Medical imaging Neural Networks, Computer Performance enhancement Pulmonary diseases Radiography, Thoracic - methods Radiology Reliability Reproducibility of Results SARS-CoV-2 semantic-powered Semantics Training X-Rays |
title | Semantic-Powered Explainable Model-Free Few-Shot Learning Scheme of Diagnosing COVID-19 on Chest X-Ray |
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