The complete mitochondrial genome of Mactra quadrangularis (Mactridae)
The whole mitochondrial genome sequence of Mactra quadrangularis (Reeve, 1854) was determined. It had a total length of 16,848 bp and it contained 12 protein coding genes, 2 ribosome RNA genes, and 22 transfer RNA genes. The base composition was 25.75% A, 20.82% G, 11.53% C, and 41.90% T, respective...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-08, Vol.6 (8), p.2305-2306 |
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| description | The whole mitochondrial genome sequence of Mactra quadrangularis (Reeve, 1854) was determined. It had a total length of 16,848 bp and it contained 12 protein coding genes, 2 ribosome RNA genes, and 22 transfer RNA genes. The base composition was 25.75% A, 20.82% G, 11.53% C, and 41.90% T, respectively. Furthermore, state codon of ND4 was ATT; ND1 and CYTB were ATA; COX1 was GTG; ND5, COX2, ND4L, ND6, ND2, COX3, ATP6, and ND3 were ATG. Phylogenetic analysis demonstrated that M. quadrangularis was most closely related to Mactra chinensis. The mitochondrial genome will provide reference for the further investigation and research of M. quadrangularis. |
| doi_str_mv | 10.1080/23802359.2021.1948365 |
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It had a total length of 16,848 bp and it contained 12 protein coding genes, 2 ribosome RNA genes, and 22 transfer RNA genes. The base composition was 25.75% A, 20.82% G, 11.53% C, and 41.90% T, respectively. Furthermore, state codon of ND4 was ATT; ND1 and CYTB were ATA; COX1 was GTG; ND5, COX2, ND4L, ND6, ND2, COX3, ATP6, and ND3 were ATG. Phylogenetic analysis demonstrated that M. quadrangularis was most closely related to Mactra chinensis. The mitochondrial genome will provide reference for the further investigation and research of M. quadrangularis.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2021.1948365</identifier><identifier>PMID: 34345685</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Base composition ; Bivalvia ; Cyclooxygenase-2 ; Genomes ; Mactra quadrangularis ; Mitochondria ; Mitogenome Announcement ; Nucleotide sequence ; phylogenetic analysis ; Phylogeny ; Transfer RNA ; Venerida</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-08, Vol.6 (8), p.2305-2306</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2021 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-8bfaf2ca4788ba7f2455832206f25f6922d910b58afe8c2cd617cbb42b3a715f3</citedby><cites>FETCH-LOGICAL-c562t-8bfaf2ca4788ba7f2455832206f25f6922d910b58afe8c2cd617cbb42b3a715f3</cites><orcidid>0000-0001-9860-3923 ; 0000-0001-9585-4727 ; 0000-0002-9940-7606</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284122/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8284122/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2100,27500,27922,27923,53789,53791,59141,59142</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34345685$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Guan, Chen</creatorcontrib><creatorcontrib>Zhao, Xin-Yu</creatorcontrib><creatorcontrib>Zhang, Huan-Xin</creatorcontrib><creatorcontrib>Chen, Jun</creatorcontrib><creatorcontrib>Qu, Tong-Fei</creatorcontrib><creatorcontrib>Hou, Cheng-Zong</creatorcontrib><creatorcontrib>Tang, Xue-Xi</creatorcontrib><creatorcontrib>Wang, Ying</creatorcontrib><title>The complete mitochondrial genome of Mactra quadrangularis (Mactridae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>The whole mitochondrial genome sequence of Mactra quadrangularis (Reeve, 1854) was determined. It had a total length of 16,848 bp and it contained 12 protein coding genes, 2 ribosome RNA genes, and 22 transfer RNA genes. The base composition was 25.75% A, 20.82% G, 11.53% C, and 41.90% T, respectively. Furthermore, state codon of ND4 was ATT; ND1 and CYTB were ATA; COX1 was GTG; ND5, COX2, ND4L, ND6, ND2, COX3, ATP6, and ND3 were ATG. Phylogenetic analysis demonstrated that M. quadrangularis was most closely related to Mactra chinensis. The mitochondrial genome will provide reference for the further investigation and research of M. quadrangularis.</description><subject>Base composition</subject><subject>Bivalvia</subject><subject>Cyclooxygenase-2</subject><subject>Genomes</subject><subject>Mactra quadrangularis</subject><subject>Mitochondria</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Transfer RNA</subject><subject>Venerida</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU9vEzEQxS0EolXoRwCtxKUcEuzx-t8FgSoKlYq4lLPl9dqJI-86tXdB_fY4TVq1HDjZmvnNs988hN4SvCJY4o9AJQbK1AowkBVRraScvUCn-_py33j55H6CzkrZYowJp0Io8Rqd0Ja2jEt2ii5vNq6xadhFN7lmCFOymzT2OZjYrN2YBtck3_wwdsqmuZ1Nn824nqPJoTTn9-XQG_fhDXrlTSzu7Hgu0K_LrzcX35fXP79dXXy5XlrGYVrKzhsP1rRCys4IDy1jkgJg7oF5rgB6RXDHpPFOWrA9J8J2XQsdNYIwTxfo6qDbJ7PVuxwGk-90MkHfF1Jea5OnYKPThPfCE6cEVaIFoqQjQCkXbeeBd3UDC_TpoLWbu8H11o3VY3wm-rwzho1ep99agmwJQBU4PwrkdDu7MukhFOtiNKNLc9FQzWGplMAVff8Puk1zHuuqKsUBK8aUrBQ7UDanUrLzj58hWO-D1w_B633w-hh8nXv31Mnj1EPMFfh8AMLoUx7Mn5RjrydzF1P2NVEbiqb_f-Mv6e67WQ</recordid><startdate>20210803</startdate><enddate>20210803</enddate><creator>Guan, Chen</creator><creator>Zhao, Xin-Yu</creator><creator>Zhang, Huan-Xin</creator><creator>Chen, Jun</creator><creator>Qu, Tong-Fei</creator><creator>Hou, Cheng-Zong</creator><creator>Tang, Xue-Xi</creator><creator>Wang, Ying</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-9860-3923</orcidid><orcidid>https://orcid.org/0000-0001-9585-4727</orcidid><orcidid>https://orcid.org/0000-0002-9940-7606</orcidid></search><sort><creationdate>20210803</creationdate><title>The complete mitochondrial genome of Mactra quadrangularis (Mactridae)</title><author>Guan, Chen ; 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Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guan, Chen</au><au>Zhao, Xin-Yu</au><au>Zhang, Huan-Xin</au><au>Chen, Jun</au><au>Qu, Tong-Fei</au><au>Hou, Cheng-Zong</au><au>Tang, Xue-Xi</au><au>Wang, Ying</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete mitochondrial genome of Mactra quadrangularis (Mactridae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2021-08-03</date><risdate>2021</risdate><volume>6</volume><issue>8</issue><spage>2305</spage><epage>2306</epage><pages>2305-2306</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>The whole mitochondrial genome sequence of Mactra quadrangularis (Reeve, 1854) was determined. It had a total length of 16,848 bp and it contained 12 protein coding genes, 2 ribosome RNA genes, and 22 transfer RNA genes. The base composition was 25.75% A, 20.82% G, 11.53% C, and 41.90% T, respectively. Furthermore, state codon of ND4 was ATT; ND1 and CYTB were ATA; COX1 was GTG; ND5, COX2, ND4L, ND6, ND2, COX3, ATP6, and ND3 were ATG. Phylogenetic analysis demonstrated that M. quadrangularis was most closely related to Mactra chinensis. The mitochondrial genome will provide reference for the further investigation and research of M. quadrangularis.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>34345685</pmid><doi>10.1080/23802359.2021.1948365</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0001-9860-3923</orcidid><orcidid>https://orcid.org/0000-0001-9585-4727</orcidid><orcidid>https://orcid.org/0000-0002-9940-7606</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Base composition Bivalvia Cyclooxygenase-2 Genomes Mactra quadrangularis Mitochondria Mitogenome Announcement Nucleotide sequence phylogenetic analysis Phylogeny Transfer RNA Venerida |
| title | The complete mitochondrial genome of Mactra quadrangularis (Mactridae) |
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