The complete chloroplast genome of Crataegus hupehensis Sarg. (Rosaceae), a medicinal and edible plant in China
Crataegus hupehensis Sarg. is well-known for its medicinal and nutritive value. In this study, the complete chloroplast genome sequence of C. hupehensis was determined by using Illumina high-throughput sequencing approach. The complete chloroplast genome is 159,766 bp with 36.6% GC content. It conta...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-02, Vol.6 (2), p.315-317 |
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| description | Crataegus hupehensis Sarg. is well-known for its medicinal and nutritive value. In this study, the complete chloroplast genome sequence of C. hupehensis was determined by using Illumina high-throughput sequencing approach. The complete chloroplast genome is 159,766 bp with 36.6% GC content. It contained a pair of inverted repeat regions of 26,385 bp, a large single-copy region of 87,852 bp, and a small single-copy region of 19,144 bp. It contained 112 distinct genes, including 78 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis based on chloroplast genomes indicated that C. hupehensisis was closely related to C. kansuensis and C. marshallii in the subfamily Maloideae. This complete chloroplast genome will provide valuable insight into evolution, molecular breeding, and phylogenetic analysis of Crataegus species. |
| doi_str_mv | 10.1080/23802359.2020.1866464 |
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(Rosaceae), a medicinal and edible plant in China</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Hu, Guanglong ; Zheng, Shuqi ; Pan, Qinghua ; Dong, Ningguang</creator><creatorcontrib>Hu, Guanglong ; Zheng, Shuqi ; Pan, Qinghua ; Dong, Ningguang</creatorcontrib><description>Crataegus hupehensis Sarg. is well-known for its medicinal and nutritive value. In this study, the complete chloroplast genome sequence of C. hupehensis was determined by using Illumina high-throughput sequencing approach. The complete chloroplast genome is 159,766 bp with 36.6% GC content. It contained a pair of inverted repeat regions of 26,385 bp, a large single-copy region of 87,852 bp, and a small single-copy region of 19,144 bp. It contained 112 distinct genes, including 78 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis based on chloroplast genomes indicated that C. hupehensisis was closely related to C. kansuensis and C. marshallii in the subfamily Maloideae. This complete chloroplast genome will provide valuable insight into evolution, molecular breeding, and phylogenetic analysis of Crataegus species.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1866464</identifier><identifier>PMID: 33659661</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast genome sequence ; Chloroplasts ; Crataegus ; Crataegus hupehensis ; Genomes ; Inverted repeat ; Medicinal plants ; Mitogenome Announcement ; Next-generation sequencing ; Nucleotide sequence ; Nutritive value ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; rRNA ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-02, Vol.6 (2), p.315-317</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-b7f660507e8dfc195e52e2381360b4375e8b54d34d1be6605dead112368801d23</citedby><cites>FETCH-LOGICAL-c562t-b7f660507e8dfc195e52e2381360b4375e8b54d34d1be6605dead112368801d23</cites><orcidid>0000-0001-6060-1826</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872584/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7872584/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,861,882,2096,27483,27905,27906,53772,53774,59122,59123</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33659661$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hu, Guanglong</creatorcontrib><creatorcontrib>Zheng, Shuqi</creatorcontrib><creatorcontrib>Pan, Qinghua</creatorcontrib><creatorcontrib>Dong, Ningguang</creatorcontrib><title>The complete chloroplast genome of Crataegus hupehensis Sarg. (Rosaceae), a medicinal and edible plant in China</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Crataegus hupehensis Sarg. is well-known for its medicinal and nutritive value. In this study, the complete chloroplast genome sequence of C. hupehensis was determined by using Illumina high-throughput sequencing approach. The complete chloroplast genome is 159,766 bp with 36.6% GC content. It contained a pair of inverted repeat regions of 26,385 bp, a large single-copy region of 87,852 bp, and a small single-copy region of 19,144 bp. It contained 112 distinct genes, including 78 protein-coding genes, 4 ribosomal RNA genes, and 30 transfer RNA genes. Phylogenetic analysis based on chloroplast genomes indicated that C. hupehensisis was closely related to C. kansuensis and C. marshallii in the subfamily Maloideae. This complete chloroplast genome will provide valuable insight into evolution, molecular breeding, and phylogenetic analysis of Crataegus species.</description><subject>chloroplast genome sequence</subject><subject>Chloroplasts</subject><subject>Crataegus</subject><subject>Crataegus hupehensis</subject><subject>Genomes</subject><subject>Inverted repeat</subject><subject>Medicinal plants</subject><subject>Mitogenome Announcement</subject><subject>Next-generation sequencing</subject><subject>Nucleotide sequence</subject><subject>Nutritive value</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9Ul1rFDEUHUSxpfYnKAFfKrhrPiYf8yKVxY9CQdD6HDLJzU6WmcmazCj992bcbWl98Ck3556cm3M5VfWS4DXBCr-jTGHKeLOmmBZICVGL-kl1uuCrpfH0QX1Snee8wxgTwaRs5PPqhDHBGyHIaRVvOkA2DvseplJ0fUxx35s8oS2McQAUPdokMxnYzhl18x46GHPI6LtJ2zW6-BazsWDgzVtk0AAu2DCaHpnRoXJpe0BFbZxQGNGmK60X1TNv-gznx_Os-vHp483my-r66-erzYfrleWCTqtWeiEwxxKU85Y0HDiF4ogwgduaSQ6q5bVjtSMtLEwHxhFCmVAKE0fZWXV10HXR7PQ-hcGkWx1N0H-BmLbapCnYHnSjwGNlFaFG1thy5ZXA1kvvmoJQXLTeH7T2c1ssWhinZPpHoo87Y-j0Nv7SUknKVV0ELo4CKf6cIU96CNlCXzYDcc6a1o3Eitd4mfX6H-ouzqmstLA4l4zw4q-w-IFlU8w5gb__DMF6SYi-S4heEqKPCSnvXj10cv_qLg-FcHkghNHHNJjfMfVOT-a25MInM9qQNfv_jD9iZ8kR</recordid><startdate>20210201</startdate><enddate>20210201</enddate><creator>Hu, Guanglong</creator><creator>Zheng, Shuqi</creator><creator>Pan, Qinghua</creator><creator>Dong, Ningguang</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-6060-1826</orcidid></search><sort><creationdate>20210201</creationdate><title>The complete chloroplast genome of Crataegus hupehensis Sarg. 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| subjects | chloroplast genome sequence Chloroplasts Crataegus Crataegus hupehensis Genomes Inverted repeat Medicinal plants Mitogenome Announcement Next-generation sequencing Nucleotide sequence Nutritive value phylogenetic analysis Phylogenetics Phylogeny rRNA Transfer RNA |
| title | The complete chloroplast genome of Crataegus hupehensis Sarg. (Rosaceae), a medicinal and edible plant in China |
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