The complete chloroplast genome of Eclipta prostrata L. (Asteraceae)
Eclipta prostrata is an herbal medicinal plant belonging to the Asteraceae family. In this study, complete chloroplast genome sequence of the E. prostrata was characterized by de novo assembly using whole genome sequence data. The genome of E. prostrata was 151,757 bp in length, which was composed o...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2016-01, Vol.1 (1), p.414-415 |
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| container_title | Mitochondrial DNA. Part B. Resources |
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| creator | Park, Jee Young Lee, Yun Sun Kim, Jin-Kyung Lee, Hyun Oh Park, Hyun-Seung Lee, Sang-Choon Kang, Jung Hwa Lee, Taek Joo Sung, Sang Hyun Yang, Tae-Jin |
| description | Eclipta prostrata is an herbal medicinal plant belonging to the Asteraceae family. In this study, complete chloroplast genome sequence of the E. prostrata was characterized by de novo assembly using whole genome sequence data. The genome of E. prostrata was 151,757 bp in length, which was composed of large single copy region of 83,285 bp, small single copy region of 18,346 bp and a pair of inverted repeat regions of 25,063 bp. The genome harboured 80 protein coding sequences, 30 tRNA genes and 4 rRNA genes. We confirmed close taxonomic relationship between E. prostrata and Helianthus annuus through phylogenetic analysis with chloroplast protein-coding genes. |
| doi_str_mv | 10.1080/23802359.2016.1176882 |
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(Asteraceae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>PubMed Central</source><creator>Park, Jee Young ; Lee, Yun Sun ; Kim, Jin-Kyung ; Lee, Hyun Oh ; Park, Hyun-Seung ; Lee, Sang-Choon ; Kang, Jung Hwa ; Lee, Taek Joo ; Sung, Sang Hyun ; Yang, Tae-Jin</creator><creatorcontrib>Park, Jee Young ; Lee, Yun Sun ; Kim, Jin-Kyung ; Lee, Hyun Oh ; Park, Hyun-Seung ; Lee, Sang-Choon ; Kang, Jung Hwa ; Lee, Taek Joo ; Sung, Sang Hyun ; Yang, Tae-Jin</creatorcontrib><description>Eclipta prostrata is an herbal medicinal plant belonging to the Asteraceae family. In this study, complete chloroplast genome sequence of the E. prostrata was characterized by de novo assembly using whole genome sequence data. The genome of E. prostrata was 151,757 bp in length, which was composed of large single copy region of 83,285 bp, small single copy region of 18,346 bp and a pair of inverted repeat regions of 25,063 bp. The genome harboured 80 protein coding sequences, 30 tRNA genes and 4 rRNA genes. We confirmed close taxonomic relationship between E. prostrata and Helianthus annuus through phylogenetic analysis with chloroplast protein-coding genes.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2016.1176882</identifier><identifier>PMID: 33473502</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Asteraceae ; Chloroplast ; Chloroplasts ; Eclipta prostrata ; genome sequence ; Genomes ; Herbal medicine ; Inverted repeat ; Medicinal plants ; Mitogenome Announcement ; Nucleotide sequence ; Phylogeny ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2016 The Author(s).</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c496t-ff1d8e99d08a3514808a2f9c4bbc712076f35b037a1a53e731211480430746f83</citedby><cites>FETCH-LOGICAL-c496t-ff1d8e99d08a3514808a2f9c4bbc712076f35b037a1a53e731211480430746f83</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799467/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7799467/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,27501,27923,27924,53790,53792,59142,59143</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33473502$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Park, Jee Young</creatorcontrib><creatorcontrib>Lee, Yun Sun</creatorcontrib><creatorcontrib>Kim, Jin-Kyung</creatorcontrib><creatorcontrib>Lee, Hyun Oh</creatorcontrib><creatorcontrib>Park, Hyun-Seung</creatorcontrib><creatorcontrib>Lee, Sang-Choon</creatorcontrib><creatorcontrib>Kang, Jung Hwa</creatorcontrib><creatorcontrib>Lee, Taek Joo</creatorcontrib><creatorcontrib>Sung, Sang Hyun</creatorcontrib><creatorcontrib>Yang, Tae-Jin</creatorcontrib><title>The complete chloroplast genome of Eclipta prostrata L. 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We confirmed close taxonomic relationship between E. prostrata and Helianthus annuus through phylogenetic analysis with chloroplast protein-coding genes.</description><subject>Asteraceae</subject><subject>Chloroplast</subject><subject>Chloroplasts</subject><subject>Eclipta prostrata</subject><subject>genome sequence</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Inverted repeat</subject><subject>Medicinal plants</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2016</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kU1LAzEQhoMoWmp_grLgpR5a87Wb7EUstX5AwUs9hzRN2pXsZk22Sv-9WfpB9eBpXjLPTGbmBeAKwSGCHN5hwiEmaT7EEGVDhFjGOT4BnfZ90CZOj_QF6IXwAWFECWM5OwcXhFBGUog74HG20olyZW11E8XKOu9qK0OTLHXlSp04k0yULepGJrV3ofEyqukw6Y9Co71UWurbS3BmpA26t4td8P40mY1fBtO359fxaDpQNM-agTFowXWeLyCXJEWUx4hNruh8rhjCkGWGpHNImEQyJZoRhFFLUQIZzQwnXXC_7Vuv56VeKF3FcayofVFKvxFOFuJ3pipWYum-RFw7pxmLDfq7Bt59rnVoRFkEpa2VlXbrIDCN94GcIRTRmz_oh1v7Kq4XKc4IhXkKI5VuKRVvE7w2h2EQFK1VYm-VaK0SO6ti3fXxJoeqvTEReNgCRWWcL-W383YhGrmJBhkvK1UEQf7_4wc74qC9</recordid><startdate>20160101</startdate><enddate>20160101</enddate><creator>Park, Jee Young</creator><creator>Lee, Yun Sun</creator><creator>Kim, Jin-Kyung</creator><creator>Lee, Hyun Oh</creator><creator>Park, Hyun-Seung</creator><creator>Lee, Sang-Choon</creator><creator>Kang, Jung Hwa</creator><creator>Lee, Taek Joo</creator><creator>Sung, Sang Hyun</creator><creator>Yang, Tae-Jin</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20160101</creationdate><title>The complete chloroplast genome of Eclipta prostrata L. (Asteraceae)</title><author>Park, Jee Young ; Lee, Yun Sun ; Kim, Jin-Kyung ; Lee, Hyun Oh ; Park, Hyun-Seung ; Lee, Sang-Choon ; Kang, Jung Hwa ; Lee, Taek Joo ; Sung, Sang Hyun ; Yang, Tae-Jin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c496t-ff1d8e99d08a3514808a2f9c4bbc712076f35b037a1a53e731211480430746f83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Asteraceae</topic><topic>Chloroplast</topic><topic>Chloroplasts</topic><topic>Eclipta prostrata</topic><topic>genome sequence</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Inverted repeat</topic><topic>Medicinal plants</topic><topic>Mitogenome Announcement</topic><topic>Nucleotide sequence</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>tRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Park, Jee Young</creatorcontrib><creatorcontrib>Lee, Yun Sun</creatorcontrib><creatorcontrib>Kim, Jin-Kyung</creatorcontrib><creatorcontrib>Lee, Hyun Oh</creatorcontrib><creatorcontrib>Park, Hyun-Seung</creatorcontrib><creatorcontrib>Lee, Sang-Choon</creatorcontrib><creatorcontrib>Kang, Jung Hwa</creatorcontrib><creatorcontrib>Lee, Taek Joo</creatorcontrib><creatorcontrib>Sung, Sang Hyun</creatorcontrib><creatorcontrib>Yang, Tae-Jin</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Mitochondrial DNA. 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In this study, complete chloroplast genome sequence of the E. prostrata was characterized by de novo assembly using whole genome sequence data. The genome of E. prostrata was 151,757 bp in length, which was composed of large single copy region of 83,285 bp, small single copy region of 18,346 bp and a pair of inverted repeat regions of 25,063 bp. The genome harboured 80 protein coding sequences, 30 tRNA genes and 4 rRNA genes. We confirmed close taxonomic relationship between E. prostrata and Helianthus annuus through phylogenetic analysis with chloroplast protein-coding genes.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33473502</pmid><doi>10.1080/23802359.2016.1176882</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | Asteraceae Chloroplast Chloroplasts Eclipta prostrata genome sequence Genomes Herbal medicine Inverted repeat Medicinal plants Mitogenome Announcement Nucleotide sequence Phylogeny rRNA tRNA |
| title | The complete chloroplast genome of Eclipta prostrata L. (Asteraceae) |
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