Determination and phylogenetic analysis of the complete mitochondrial genome of Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi (Artiodactyla: Bovidae)

Determination and phylogenetic analysis of the complete mitochondrial genome of Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi (Artiodactyla: Bovidae)

Nili-Ravi buffalo (Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi, NRB) is a famous water buffalo breed in the world. It is the first time that the complete mitochondrial genome sequence of the NRB was reported. The total length of the mtDNA is 16,356 bp, It contains the typical structure, including...

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Veröffentlicht in:Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.461-462
Hauptverfasser: Lin, Qian, Li, Meng-Wei, Wang, Yan-Zhou, Qiu, Hua-Jiao
Format: Artikel
Sprache:eng
Schlagworte:
Bovidae
Bubalus bubalis
Computer applications
Genetic relationship
Genetics & Heredity
Genomes
Life Sciences & Biomedicine
Mitochondria
Mitochondrial DNA
mitochondrial genome
Mitogenome Announcement
Nili-Ravi buffalo
Nucleotide sequence
phylogenetic analyses
Phylogenetics
Phylogeny
rRNA
Science & Technology
Transfer RNA
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Wang, Yan-Zhou
Qiu, Hua-Jiao
description Nili-Ravi buffalo (Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi, NRB) is a famous water buffalo breed in the world. It is the first time that the complete mitochondrial genome sequence of the NRB was reported. The total length of the mtDNA is 16,356 bp, It contains the typical structure, including 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D-loop region). The overall composition of the mtDNA was estimated to be 33.11% for A, 26.45% for T, 26.55% for C, and 13.89% for G. Phylogenetic analyses using neighbor-joining (N-J) computational algorithms showed that the analyzed 18 Ruminantia species are divided into four major clades: Bovidae, Cervidae, Giraffidae, and Atilocapridae. In addition, our work confirmed that NRB has a close genetic relationship with B. bubalis isolate India 4.
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Wang, Yan-Zhou ; Qiu, Hua-Jiao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-9fd365c7ae74a8e0cdc8ed6835606d352043249e1484ec868db4c386f8507a6a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Bovidae</topic><topic>Bubalus bubalis</topic><topic>Computer applications</topic><topic>Genetic relationship</topic><topic>Genetics &amp; Heredity</topic><topic>Genomes</topic><topic>Life Sciences &amp; Biomedicine</topic><topic>Mitochondria</topic><topic>Mitochondrial DNA</topic><topic>mitochondrial genome</topic><topic>Mitogenome Announcement</topic><topic>Nili-Ravi buffalo</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analyses</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Science &amp; Technology</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lin, Qian</creatorcontrib><creatorcontrib>Li, Meng-Wei</creatorcontrib><creatorcontrib>Wang, Yan-Zhou</creatorcontrib><creatorcontrib>Qiu, Hua-Jiao</creatorcontrib><collection>Taylor &amp; 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Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lin, Qian</au><au>Li, Meng-Wei</au><au>Wang, Yan-Zhou</au><au>Qiu, Hua-Jiao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Determination and phylogenetic analysis of the complete mitochondrial genome of Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi (Artiodactyla: Bovidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><stitle>MITOCHONDRIAL DNA B</stitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2020-01-02</date><risdate>2020</risdate><volume>5</volume><issue>1</issue><spage>461</spage><epage>462</epage><pages>461-462</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Nili-Ravi buffalo (Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi, NRB) is a famous water buffalo breed in the world. It is the first time that the complete mitochondrial genome sequence of the NRB was reported. The total length of the mtDNA is 16,356 bp, It contains the typical structure, including 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes, and 1 non-coding control region (D-loop region). The overall composition of the mtDNA was estimated to be 33.11% for A, 26.45% for T, 26.55% for C, and 13.89% for G. Phylogenetic analyses using neighbor-joining (N-J) computational algorithms showed that the analyzed 18 Ruminantia species are divided into four major clades: Bovidae, Cervidae, Giraffidae, and Atilocapridae. In addition, our work confirmed that NRB has a close genetic relationship with B. bubalis isolate India 4.</abstract><cop>ABINGDON</cop><pub>Taylor &amp; Francis</pub><pmid>33366602</pmid><doi>10.1080/23802359.2019.1704182</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record>
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subjects Bovidae
Bubalus bubalis
Computer applications
Genetic relationship
Genetics & Heredity
Genomes
Life Sciences & Biomedicine
Mitochondria
Mitochondrial DNA
mitochondrial genome
Mitogenome Announcement
Nili-Ravi buffalo
Nucleotide sequence
phylogenetic analyses
Phylogenetics
Phylogeny
rRNA
Science & Technology
Transfer RNA
title Determination and phylogenetic analysis of the complete mitochondrial genome of Bubalus bubalis Linnaeus, 1758 breed Nili-Ravi (Artiodactyla: Bovidae)
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