The complete chloroplast genome sequence of Santalum album
The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.406-407 |
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| creator | Yang, Dejun Qiu, Qiong Xu, Linhong Xu, Yumei Wang, Yi |
| description | The first complete chloroplast genome (cpDNA) sequence of Santalum album was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order. |
| doi_str_mv | 10.1080/23802359.2019.1704199 |
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The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2020 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-1d9211b968f46f988b95fdba7645f78d930b09538cbd261614592037823b3b6a3</cites><orcidid>0000-0003-3089-8184</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748440/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7748440/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2102,27502,27924,27925,53791,53793,59143,59144</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366578$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yang, Dejun</creatorcontrib><creatorcontrib>Qiu, Qiong</creatorcontrib><creatorcontrib>Xu, Linhong</creatorcontrib><creatorcontrib>Xu, Yumei</creatorcontrib><creatorcontrib>Wang, Yi</creatorcontrib><title>The complete chloroplast genome sequence of Santalum album</title><title>Mitochondrial DNA. 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Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order.</description><subject>chloroplast</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Illumina sequencing</subject><subject>Mitogenome Announcement</subject><subject>Nucleotide sequence</subject><subject>phylogenetic analysis</subject><subject>rRNA</subject><subject>Santalum album</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kU1vEzEQhi0EolXpTwCtxIVLgr8_OCBQRUulShwoZ8v22slGXjvYu6D-e7wkrVoOnDyaeeeZ8bwAvEZwjaCE7zGREBOm1hgitUYCUqTUM3C65FdL4fmj-ASc17qDECJOhFDiJTghhHDOhDwFH263vnN53Ec_tWAbc8n7aOrUbXzKo--q_zn75HyXQ_fdpMnEeexMtPP4CrwIJlZ_fnzPwI_LL7cXX1c3366uLz7frBxDcFqhXmGErOIyUB6UlFax0FsjOGVByF4RaKFiRDrbY444okxhSITExBLLDTkD1wdun81O78swmnKnsxn030QuG23KNLjoNQpEIMFku4ajVjJl8TKVCxyUYs411scDaz_b0ffOp6mY-AT6tJKGrd7kX1oIKimFDfDuCCi5HaZOehyq8zGa5PNcNaaCUCShIk369h_pLs8ltVNpTDhpbii-ANlB5UqutfjwsAyCejFb35utF7P10ezW9-bxTx667q1tgk8HwZBCLqP5nUvs9WTumsWhmOSGqsn_Z_wBhYy2KA</recordid><startdate>20200102</startdate><enddate>20200102</enddate><creator>Yang, Dejun</creator><creator>Qiu, Qiong</creator><creator>Xu, Linhong</creator><creator>Xu, Yumei</creator><creator>Wang, Yi</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-3089-8184</orcidid></search><sort><creationdate>20200102</creationdate><title>The complete chloroplast genome sequence of Santalum album</title><author>Yang, Dejun ; Qiu, Qiong ; Xu, Linhong ; Xu, Yumei ; Wang, Yi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-1d9211b968f46f988b95fdba7645f78d930b09538cbd261614592037823b3b6a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>chloroplast</topic><topic>Chloroplasts</topic><topic>Genomes</topic><topic>Illumina sequencing</topic><topic>Mitogenome Announcement</topic><topic>Nucleotide sequence</topic><topic>phylogenetic analysis</topic><topic>rRNA</topic><topic>Santalum album</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yang, Dejun</creatorcontrib><creatorcontrib>Qiu, Qiong</creatorcontrib><creatorcontrib>Xu, Linhong</creatorcontrib><creatorcontrib>Xu, Yumei</creatorcontrib><creatorcontrib>Wang, Yi</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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The cpDNA is 144,101 bp in length, contains a large single copy region (LSC) of 83,796 bp and a small single copy region (SSC) of 11,277 bp, which were separated by a pair of inverted repeats (IR) regions of 24,514 bp. The genome contains 123 genes, including 80 protein-coding genes, 8 ribosomal RNA genes, and 35 transfer RNA genes. The overall GC content of the whole genome is 38.0%, and the corresponding values of the LSC, SSC, and IR regions are 35.9%, 31.4%, and 43.1%, respectively. Further phylogenomic analysis showed that S. album and Osyris alba clustered in a clade in Santalales order.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33366578</pmid><doi>10.1080/23802359.2019.1704199</doi><tpages>2</tpages><orcidid>https://orcid.org/0000-0003-3089-8184</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | chloroplast Chloroplasts Genomes Illumina sequencing Mitogenome Announcement Nucleotide sequence phylogenetic analysis rRNA Santalum album Transfer RNA |
| title | The complete chloroplast genome sequence of Santalum album |
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