The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae)
Ephedra sinica has been utilized by humans for over 5000 years as Chinese herbal medicine in China. In this study, we reported the complete chloroplast genome of E. sinica. The chloroplast genome of E. sinica is 109,550 bp in length as the circular, which harbors a large single-copy (LSC) region of...
Gespeichert in:
| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2019-07, Vol.4 (2), p.3894-3895 |
|---|---|
| Hauptverfasser: | , , |
| Format: | Artikel |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | 3895 |
|---|---|
| container_issue | 2 |
| container_start_page | 3894 |
| container_title | Mitochondrial DNA. Part B. Resources |
| container_volume | 4 |
| creator | Lin, Yifeng Cao, Tianyi Zhang, Quan |
| description | Ephedra sinica has been utilized by humans for over 5000 years as Chinese herbal medicine in China. In this study, we reported the complete chloroplast genome of E. sinica. The chloroplast genome of E. sinica is 109,550 bp in length as the circular, which harbors a large single-copy (LSC) region of 59,962 bp, a small single-copy (SSC) region of 8106 bp and separated by a pair of inverted-repeat (IR) regions of 20,742 bp each. The overall nucleotide content of the chloroplast genome: A of 31.2%, T of 32.1%, C of 18.4% G of 18.3%, and 36.7% GC content. This chloroplast genome contains 118 genes, which includes 74 protein-coding genes (PCGs), 36 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). Phylogenetic analysis result showed that E. sinica was most closely related to Ephedra equisetina in the family Ephedraceae using the Neighbor-Joining (NJ) method. |
| doi_str_mv | 10.1080/23802359.2019.1687355 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmed_primary_33366239</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><doaj_id>oai_doaj_org_article_b41276e785144100ae6f2fea63f3b542</doaj_id><sourcerecordid>2473417262</sourcerecordid><originalsourceid>FETCH-LOGICAL-c562t-8e1577b2fcc8e31bc94d67b01f86c7cd93e7eb186c03ed77fdddea83897f51303</originalsourceid><addsrcrecordid>eNp9kk1v1DAQhiMEolXpTwBF4lKk7uKPxONcUFFVoFIlhFTOlmOPN14ldrCzoP77Juy2ajlwsmfm9TO25y2Kt5SsKZHkI-OSMF43a0Zos6ZCAq_rF8Xxkl8thZdP9kfFac5bQggVHKCB18UR51wIxpvj4sdth6Xp-pji2Os8lRsMccAyulKH0g9jTJMOU9lhass8ovGYz8ursUObdJl98EaXZ4fYoMYPb4pXTvcZTw_rSfHzy9Xt5bfVzfev15efb1amFmxaSaQ1QMucMRI5bU1TWQEtoU4KA8Y2HAFbOgeEowVw1lrUkssGXE054SfF9Z5ro96qMflBpzsVtVd_EzFtlE6TNz2qtqIMBIKsaVVRQjQKxxxqwR1v64rNrE971rhrB7QGw5R0_wz6vBJ8pzbxtwIgAFDNgLMDIMVfO8yTGnw22Pc6YNxlxSrgFQUmll7v_5Fu4y6F-avUPC1GKlExOavqvcqkmHNC93gZStTiAfXgAbV4QB08MJ979_Qlj6ceJj4LLvYCH1xMg_4TU2_VpO9mC7ikg_FZ8f_3uAd-I7-w</addsrcrecordid><sourcetype>Open Website</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2352046428</pqid></control><display><type>article</type><title>The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae)</title><source>Taylor & Francis Open Access</source><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central</source><source>EZB Electronic Journals Library</source><creator>Lin, Yifeng ; Cao, Tianyi ; Zhang, Quan</creator><creatorcontrib>Lin, Yifeng ; Cao, Tianyi ; Zhang, Quan</creatorcontrib><description>Ephedra sinica has been utilized by humans for over 5000 years as Chinese herbal medicine in China. In this study, we reported the complete chloroplast genome of E. sinica. The chloroplast genome of E. sinica is 109,550 bp in length as the circular, which harbors a large single-copy (LSC) region of 59,962 bp, a small single-copy (SSC) region of 8106 bp and separated by a pair of inverted-repeat (IR) regions of 20,742 bp each. The overall nucleotide content of the chloroplast genome: A of 31.2%, T of 32.1%, C of 18.4% G of 18.3%, and 36.7% GC content. This chloroplast genome contains 118 genes, which includes 74 protein-coding genes (PCGs), 36 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). Phylogenetic analysis result showed that E. sinica was most closely related to Ephedra equisetina in the family Ephedraceae using the Neighbor-Joining (NJ) method.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2019.1687355</identifier><identifier>PMID: 33366239</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>chloroplast genome ; Chloroplasts ; Ephedra sinica ; Ephedraceae ; Genomes ; Herbal medicine ; Heredity ; Mitogenome Announcement ; phylogenetic analysis ; Phylogeny ; Ribonucleic acid ; RNA ; Transfer RNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2019-07, Vol.4 (2), p.3894-3895</ispartof><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2019 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2019 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c562t-8e1577b2fcc8e31bc94d67b01f86c7cd93e7eb186c03ed77fdddea83897f51303</citedby><cites>FETCH-LOGICAL-c562t-8e1577b2fcc8e31bc94d67b01f86c7cd93e7eb186c03ed77fdddea83897f51303</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707774/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7707774/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,864,885,2100,27501,27923,27924,53790,53792,59142,59143</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33366239$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lin, Yifeng</creatorcontrib><creatorcontrib>Cao, Tianyi</creatorcontrib><creatorcontrib>Zhang, Quan</creatorcontrib><title>The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Ephedra sinica has been utilized by humans for over 5000 years as Chinese herbal medicine in China. In this study, we reported the complete chloroplast genome of E. sinica. The chloroplast genome of E. sinica is 109,550 bp in length as the circular, which harbors a large single-copy (LSC) region of 59,962 bp, a small single-copy (SSC) region of 8106 bp and separated by a pair of inverted-repeat (IR) regions of 20,742 bp each. The overall nucleotide content of the chloroplast genome: A of 31.2%, T of 32.1%, C of 18.4% G of 18.3%, and 36.7% GC content. This chloroplast genome contains 118 genes, which includes 74 protein-coding genes (PCGs), 36 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). Phylogenetic analysis result showed that E. sinica was most closely related to Ephedra equisetina in the family Ephedraceae using the Neighbor-Joining (NJ) method.</description><subject>chloroplast genome</subject><subject>Chloroplasts</subject><subject>Ephedra sinica</subject><subject>Ephedraceae</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Heredity</subject><subject>Mitogenome Announcement</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>Transfer RNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kk1v1DAQhiMEolXpTwBF4lKk7uKPxONcUFFVoFIlhFTOlmOPN14ldrCzoP77Juy2ajlwsmfm9TO25y2Kt5SsKZHkI-OSMF43a0Zos6ZCAq_rF8Xxkl8thZdP9kfFac5bQggVHKCB18UR51wIxpvj4sdth6Xp-pji2Os8lRsMccAyulKH0g9jTJMOU9lhass8ovGYz8ursUObdJl98EaXZ4fYoMYPb4pXTvcZTw_rSfHzy9Xt5bfVzfev15efb1amFmxaSaQ1QMucMRI5bU1TWQEtoU4KA8Y2HAFbOgeEowVw1lrUkssGXE054SfF9Z5ro96qMflBpzsVtVd_EzFtlE6TNz2qtqIMBIKsaVVRQjQKxxxqwR1v64rNrE971rhrB7QGw5R0_wz6vBJ8pzbxtwIgAFDNgLMDIMVfO8yTGnw22Pc6YNxlxSrgFQUmll7v_5Fu4y6F-avUPC1GKlExOavqvcqkmHNC93gZStTiAfXgAbV4QB08MJ979_Qlj6ceJj4LLvYCH1xMg_4TU2_VpO9mC7ikg_FZ8f_3uAd-I7-w</recordid><startdate>20190703</startdate><enddate>20190703</enddate><creator>Lin, Yifeng</creator><creator>Cao, Tianyi</creator><creator>Zhang, Quan</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20190703</creationdate><title>The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae)</title><author>Lin, Yifeng ; Cao, Tianyi ; Zhang, Quan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c562t-8e1577b2fcc8e31bc94d67b01f86c7cd93e7eb186c03ed77fdddea83897f51303</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>chloroplast genome</topic><topic>Chloroplasts</topic><topic>Ephedra sinica</topic><topic>Ephedraceae</topic><topic>Genomes</topic><topic>Herbal medicine</topic><topic>Heredity</topic><topic>Mitogenome Announcement</topic><topic>phylogenetic analysis</topic><topic>Phylogeny</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lin, Yifeng</creatorcontrib><creatorcontrib>Cao, Tianyi</creatorcontrib><creatorcontrib>Zhang, Quan</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest research library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lin, Yifeng</au><au>Cao, Tianyi</au><au>Zhang, Quan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2019-07-03</date><risdate>2019</risdate><volume>4</volume><issue>2</issue><spage>3894</spage><epage>3895</epage><pages>3894-3895</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Ephedra sinica has been utilized by humans for over 5000 years as Chinese herbal medicine in China. In this study, we reported the complete chloroplast genome of E. sinica. The chloroplast genome of E. sinica is 109,550 bp in length as the circular, which harbors a large single-copy (LSC) region of 59,962 bp, a small single-copy (SSC) region of 8106 bp and separated by a pair of inverted-repeat (IR) regions of 20,742 bp each. The overall nucleotide content of the chloroplast genome: A of 31.2%, T of 32.1%, C of 18.4% G of 18.3%, and 36.7% GC content. This chloroplast genome contains 118 genes, which includes 74 protein-coding genes (PCGs), 36 transfer RNA (tRNAs) and 8 ribosome RNA (rRNAs). Phylogenetic analysis result showed that E. sinica was most closely related to Ephedra equisetina in the family Ephedraceae using the Neighbor-Joining (NJ) method.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33366239</pmid><doi>10.1080/23802359.2019.1687355</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 2380-2359 |
| ispartof | Mitochondrial DNA. Part B. Resources, 2019-07, Vol.4 (2), p.3894-3895 |
| issn | 2380-2359 2380-2359 |
| language | eng |
| recordid | cdi_pubmed_primary_33366239 |
| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; PubMed Central; EZB Electronic Journals Library |
| subjects | chloroplast genome Chloroplasts Ephedra sinica Ephedraceae Genomes Herbal medicine Heredity Mitogenome Announcement phylogenetic analysis Phylogeny Ribonucleic acid RNA Transfer RNA |
| title | The chloroplast genome of an important herb species, Ephedra sinica (Ephedraceae) |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-10T16%3A52%3A42IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=The%20chloroplast%20genome%20of%20an%20important%20herb%20species,%20Ephedra%20sinica%20(Ephedraceae)&rft.jtitle=Mitochondrial%20DNA.%20Part%20B.%20Resources&rft.au=Lin,%20Yifeng&rft.date=2019-07-03&rft.volume=4&rft.issue=2&rft.spage=3894&rft.epage=3895&rft.pages=3894-3895&rft.issn=2380-2359&rft.eissn=2380-2359&rft_id=info:doi/10.1080/23802359.2019.1687355&rft_dat=%3Cproquest_pubme%3E2473417262%3C/proquest_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2352046428&rft_id=info:pmid/33366239&rft_doaj_id=oai_doaj_org_article_b41276e785144100ae6f2fea63f3b542&rfr_iscdi=true |