Clinical Interpretable Deep Learning Model for Glaucoma Diagnosis
Despite the potential to revolutionise disease diagnosis by performing data-driven classification, clinical interpretability of ConvNet remains challenging. In this paper, a novel clinical interpretable ConvNet architecture is proposed not only for accurate glaucoma diagnosis but also for the more t...
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description | Despite the potential to revolutionise disease diagnosis by performing data-driven classification, clinical interpretability of ConvNet remains challenging. In this paper, a novel clinical interpretable ConvNet architecture is proposed not only for accurate glaucoma diagnosis but also for the more transparent interpretation by highlighting the distinct regions recognised by the network. To the best of our knowledge, this is the first work of providing the interpretable diagnosis of glaucoma with the popular deep learning model. We propose a novel scheme for aggregating features from different scales to promote the performance of glaucoma diagnosis, which we refer to as M-LAP. Moreover, by modelling the correspondence from binary diagnosis information to the spatial pixels, the proposed scheme generates glaucoma activations, which bridge the gap between global semantical diagnosis and precise location. In contrast to previous works, it can discover the distinguish local regions in fundus images as evidence for clinical interpretable glaucoma diagnosis. Experimental results, performed on the challenging ORIGA datasets, show that our method on glaucoma diagnosis outperforms state-of-the-art methods with the highest AUC (0.88). Remarkably, the extensive results, optic disc segmentation (dice of 0.9) and local disease focus localization based on the evidence map, demonstrate the effectiveness of our methods on clinical interpretability. |
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In this paper, a novel clinical interpretable ConvNet architecture is proposed not only for accurate glaucoma diagnosis but also for the more transparent interpretation by highlighting the distinct regions recognised by the network. To the best of our knowledge, this is the first work of providing the interpretable diagnosis of glaucoma with the popular deep learning model. We propose a novel scheme for aggregating features from different scales to promote the performance of glaucoma diagnosis, which we refer to as M-LAP. Moreover, by modelling the correspondence from binary diagnosis information to the spatial pixels, the proposed scheme generates glaucoma activations, which bridge the gap between global semantical diagnosis and precise location. In contrast to previous works, it can discover the distinguish local regions in fundus images as evidence for clinical interpretable glaucoma diagnosis. Experimental results, performed on the challenging ORIGA datasets, show that our method on glaucoma diagnosis outperforms state-of-the-art methods with the highest AUC (0.88). Remarkably, the extensive results, optic disc segmentation (dice of 0.9) and local disease focus localization based on the evidence map, demonstrate the effectiveness of our methods on clinical interpretability.</description><identifier>ISSN: 2168-2194</identifier><identifier>EISSN: 2168-2208</identifier><identifier>DOI: 10.1109/JBHI.2019.2949075</identifier><identifier>PMID: 31647449</identifier><identifier>CODEN: IJBHA9</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Biomedical optical imaging ; clinical interpreta-tion ; Computer architecture ; Convolution ; Deep Learning ; Diagnosis ; Feature extraction ; Glaucoma ; Glaucoma - diagnostic imaging ; Glaucoma diagnosis ; Humans ; Image Interpretation, Computer-Assisted - methods ; Image segmentation ; Lesions ; Localization ; Machine learning ; Medical diagnosis ; medical image processing ; Optic Disk - diagnostic imaging ; Optical imaging ; ROC Curve ; Semantics</subject><ispartof>IEEE journal of biomedical and health informatics, 2020-05, Vol.24 (5), p.1405-1412</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2020</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c349t-b88351dfc6c35a3837e45aecd751cddb65cf9d3a0c627ad83e896d275822bb493</citedby><cites>FETCH-LOGICAL-c349t-b88351dfc6c35a3837e45aecd751cddb65cf9d3a0c627ad83e896d275822bb493</cites><orcidid>0000-0002-9889-8853 ; 0000-0002-5714-8861 ; 0000-0002-5171-4121</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/8880490$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>314,777,781,793,27905,27906,54739</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/8880490$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31647449$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Liao, WangMin</creatorcontrib><creatorcontrib>Zou, BeiJi</creatorcontrib><creatorcontrib>Zhao, RongChang</creatorcontrib><creatorcontrib>Chen, YuanQiong</creatorcontrib><creatorcontrib>He, ZhiYou</creatorcontrib><creatorcontrib>Zhou, MengJie</creatorcontrib><title>Clinical Interpretable Deep Learning Model for Glaucoma Diagnosis</title><title>IEEE journal of biomedical and health informatics</title><addtitle>JBHI</addtitle><addtitle>IEEE J Biomed Health Inform</addtitle><description>Despite the potential to revolutionise disease diagnosis by performing data-driven classification, clinical interpretability of ConvNet remains challenging. In this paper, a novel clinical interpretable ConvNet architecture is proposed not only for accurate glaucoma diagnosis but also for the more transparent interpretation by highlighting the distinct regions recognised by the network. To the best of our knowledge, this is the first work of providing the interpretable diagnosis of glaucoma with the popular deep learning model. We propose a novel scheme for aggregating features from different scales to promote the performance of glaucoma diagnosis, which we refer to as M-LAP. Moreover, by modelling the correspondence from binary diagnosis information to the spatial pixels, the proposed scheme generates glaucoma activations, which bridge the gap between global semantical diagnosis and precise location. In contrast to previous works, it can discover the distinguish local regions in fundus images as evidence for clinical interpretable glaucoma diagnosis. Experimental results, performed on the challenging ORIGA datasets, show that our method on glaucoma diagnosis outperforms state-of-the-art methods with the highest AUC (0.88). Remarkably, the extensive results, optic disc segmentation (dice of 0.9) and local disease focus localization based on the evidence map, demonstrate the effectiveness of our methods on clinical interpretability.</description><subject>Biomedical optical imaging</subject><subject>clinical interpreta-tion</subject><subject>Computer architecture</subject><subject>Convolution</subject><subject>Deep Learning</subject><subject>Diagnosis</subject><subject>Feature extraction</subject><subject>Glaucoma</subject><subject>Glaucoma - diagnostic imaging</subject><subject>Glaucoma diagnosis</subject><subject>Humans</subject><subject>Image Interpretation, Computer-Assisted - methods</subject><subject>Image segmentation</subject><subject>Lesions</subject><subject>Localization</subject><subject>Machine learning</subject><subject>Medical diagnosis</subject><subject>medical image processing</subject><subject>Optic Disk - diagnostic imaging</subject><subject>Optical imaging</subject><subject>ROC Curve</subject><subject>Semantics</subject><issn>2168-2194</issn><issn>2168-2208</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNpdkE1LAzEQhoMoVmp_gAiy4MVLaz53k2Ntta1UvOg5ZJPZsmU_arJ78N-b0o-DuUyYeeZleBC6I3hCCFbP7y_L1YRioiZUcYUzcYFuKEnlmFIsL09_ovgAjULY4vhkbKn0Gg0YSXnGubpB01lVNqU1VbJqOvA7D53JK0jmALtkDcY3ZbNJPloHVVK0PllUprdtbZJ5aTZNG8pwi64KUwUYHesQfb-9fs2W4_XnYjWbrseWcdWNcymZIK6wqWXCMMky4MKAdZkg1rk8FbZQjhlsU5oZJxnEUx3NhKQ0z7liQ_R0yN359qeH0Om6DBaqyjTQ9kFThqUgEossoo__0G3b-yZepynHmGCOFY4UOVDWtyF4KPTOl7Xxv5pgvVes94r1XrE-Ko47D8fkPq_BnTdOQiNwfwBKADiPpZQ4BrA_oNJ9ug</recordid><startdate>20200501</startdate><enddate>20200501</enddate><creator>Liao, WangMin</creator><creator>Zou, BeiJi</creator><creator>Zhao, RongChang</creator><creator>Chen, YuanQiong</creator><creator>He, ZhiYou</creator><creator>Zhou, MengJie</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. 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In this paper, a novel clinical interpretable ConvNet architecture is proposed not only for accurate glaucoma diagnosis but also for the more transparent interpretation by highlighting the distinct regions recognised by the network. To the best of our knowledge, this is the first work of providing the interpretable diagnosis of glaucoma with the popular deep learning model. We propose a novel scheme for aggregating features from different scales to promote the performance of glaucoma diagnosis, which we refer to as M-LAP. Moreover, by modelling the correspondence from binary diagnosis information to the spatial pixels, the proposed scheme generates glaucoma activations, which bridge the gap between global semantical diagnosis and precise location. In contrast to previous works, it can discover the distinguish local regions in fundus images as evidence for clinical interpretable glaucoma diagnosis. Experimental results, performed on the challenging ORIGA datasets, show that our method on glaucoma diagnosis outperforms state-of-the-art methods with the highest AUC (0.88). Remarkably, the extensive results, optic disc segmentation (dice of 0.9) and local disease focus localization based on the evidence map, demonstrate the effectiveness of our methods on clinical interpretability.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>31647449</pmid><doi>10.1109/JBHI.2019.2949075</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-9889-8853</orcidid><orcidid>https://orcid.org/0000-0002-5714-8861</orcidid><orcidid>https://orcid.org/0000-0002-5171-4121</orcidid></addata></record> |
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subjects | Biomedical optical imaging clinical interpreta-tion Computer architecture Convolution Deep Learning Diagnosis Feature extraction Glaucoma Glaucoma - diagnostic imaging Glaucoma diagnosis Humans Image Interpretation, Computer-Assisted - methods Image segmentation Lesions Localization Machine learning Medical diagnosis medical image processing Optic Disk - diagnostic imaging Optical imaging ROC Curve Semantics |
title | Clinical Interpretable Deep Learning Model for Glaucoma Diagnosis |
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