Genotype replacement of dengue virus type 3 and clade replacement of dengue virus type 2 genotype Cosmopolitan in Dhaka, Bangladesh in 2017
Dengue is a mosquito-borne disease that has spread to >100 countries and is caused by the dengue virus (DENV), which belongs to the Flavivirus genus of the family Flaviviridae. DENV comprises 4 serotypes (DENV-1 to -4), and each serotype is further divided into distinct genotypes. In India, it is...
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| Veröffentlicht in: | Infection, genetics and evolution genetics and evolution, 2019-11, Vol.75, p.103977, Article 103977 |
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| creator | Suzuki, Keita Phadungsombat, Juthamas Nakayama, Emi E. Saito, Akatsuki Egawa, Akio Sato, Tairyu Rahim, Rummana Hasan, Abu Lin, Marco Yung-Cheng Takasaki, Tomohiko Rahman, Mizanur Shioda, Tatsuo |
| description | Dengue is a mosquito-borne disease that has spread to >100 countries and is caused by the dengue virus (DENV), which belongs to the Flavivirus genus of the family Flaviviridae. DENV comprises 4 serotypes (DENV-1 to -4), and each serotype is further divided into distinct genotypes. In India, it is reported that all 4 serotypes of DENV co-circulate. Although Bangladesh is a neighboring country of India, very few reports have published DENV sequence data for the country, especially after 2012. To understand the current distribution of DENV genotypes in Bangladesh, we determined the nucleotide sequences of envelope regions obtained from 58 DENV-positive patients diagnosed at Apollo Hospitals Dhaka during the period between September 2017 and February 2018. We found 5 DENV-1, 47 DENV-2, and 6 DENV-3 serotypes. A phylogenetic analysis of the obtained viral sequences revealed that DENV-3 genotype I was present instead of DENV-3 genotype II, which was predominant in Bangladesh between 2000 and 2009. Furthermore, we found two distinct lineages of the Cosmopolitan genotype of DENV-2, one of which was closely related to strains from Southeast Asia and has never been reported previously in Bangladesh. These results indicated that DENVs in Bangladesh have increased in genotypic diversity and suggest that the DENV genotypic shift observed in other Asian countries also might have been taking place in Bangladesh.
•In 2017, dengue virus type 2 genotype Cosmopolitan dominated in Dhaka, Bangladesh.•Two distinct lineages of Cosmopolitan viruses from Malaysia and India were found.•Genotype shift of dengue virus type 3 from genotype II to I was observed. |
| doi_str_mv | 10.1016/j.meegid.2019.103977 |
| format | Article |
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•In 2017, dengue virus type 2 genotype Cosmopolitan dominated in Dhaka, Bangladesh.•Two distinct lineages of Cosmopolitan viruses from Malaysia and India were found.•Genotype shift of dengue virus type 3 from genotype II to I was observed.</description><identifier>ISSN: 1567-1348</identifier><identifier>EISSN: 1567-7257</identifier><identifier>DOI: 10.1016/j.meegid.2019.103977</identifier><identifier>PMID: 31351235</identifier><language>eng</language><publisher>Netherlands: Elsevier B.V</publisher><subject>Bangladesh ; Dengue ; Dengue - virology ; Dengue Virus - classification ; Dengue Virus - genetics ; DENV ; Evolution, Molecular ; Genotype ; High-Throughput Nucleotide Sequencing ; Humans ; India ; Phylogeny ; Sequence Analysis, RNA ; Serogroup ; Viral Envelope Proteins - genetics</subject><ispartof>Infection, genetics and evolution, 2019-11, Vol.75, p.103977, Article 103977</ispartof><rights>2019 The Author(s)</rights><rights>Copyright © 2019 The Author(s). Published by Elsevier B.V. All rights reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-0477-0980 ; 0000-0001-6739-0144</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S1567134819301959$$EHTML$$P50$$Gelsevier$$Hfree_for_read</linktohtml><link.rule.ids>314,776,780,3537,27901,27902,65306</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31351235$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Suzuki, Keita</creatorcontrib><creatorcontrib>Phadungsombat, Juthamas</creatorcontrib><creatorcontrib>Nakayama, Emi E.</creatorcontrib><creatorcontrib>Saito, Akatsuki</creatorcontrib><creatorcontrib>Egawa, Akio</creatorcontrib><creatorcontrib>Sato, Tairyu</creatorcontrib><creatorcontrib>Rahim, Rummana</creatorcontrib><creatorcontrib>Hasan, Abu</creatorcontrib><creatorcontrib>Lin, Marco Yung-Cheng</creatorcontrib><creatorcontrib>Takasaki, Tomohiko</creatorcontrib><creatorcontrib>Rahman, Mizanur</creatorcontrib><creatorcontrib>Shioda, Tatsuo</creatorcontrib><title>Genotype replacement of dengue virus type 3 and clade replacement of dengue virus type 2 genotype Cosmopolitan in Dhaka, Bangladesh in 2017</title><title>Infection, genetics and evolution</title><addtitle>Infect Genet Evol</addtitle><description>Dengue is a mosquito-borne disease that has spread to >100 countries and is caused by the dengue virus (DENV), which belongs to the Flavivirus genus of the family Flaviviridae. DENV comprises 4 serotypes (DENV-1 to -4), and each serotype is further divided into distinct genotypes. In India, it is reported that all 4 serotypes of DENV co-circulate. Although Bangladesh is a neighboring country of India, very few reports have published DENV sequence data for the country, especially after 2012. To understand the current distribution of DENV genotypes in Bangladesh, we determined the nucleotide sequences of envelope regions obtained from 58 DENV-positive patients diagnosed at Apollo Hospitals Dhaka during the period between September 2017 and February 2018. We found 5 DENV-1, 47 DENV-2, and 6 DENV-3 serotypes. A phylogenetic analysis of the obtained viral sequences revealed that DENV-3 genotype I was present instead of DENV-3 genotype II, which was predominant in Bangladesh between 2000 and 2009. Furthermore, we found two distinct lineages of the Cosmopolitan genotype of DENV-2, one of which was closely related to strains from Southeast Asia and has never been reported previously in Bangladesh. These results indicated that DENVs in Bangladesh have increased in genotypic diversity and suggest that the DENV genotypic shift observed in other Asian countries also might have been taking place in Bangladesh.
•In 2017, dengue virus type 2 genotype Cosmopolitan dominated in Dhaka, Bangladesh.•Two distinct lineages of Cosmopolitan viruses from Malaysia and India were found.•Genotype shift of dengue virus type 3 from genotype II to I was observed.</description><subject>Bangladesh</subject><subject>Dengue</subject><subject>Dengue - virology</subject><subject>Dengue Virus - classification</subject><subject>Dengue Virus - genetics</subject><subject>DENV</subject><subject>Evolution, Molecular</subject><subject>Genotype</subject><subject>High-Throughput Nucleotide Sequencing</subject><subject>Humans</subject><subject>India</subject><subject>Phylogeny</subject><subject>Sequence Analysis, RNA</subject><subject>Serogroup</subject><subject>Viral Envelope Proteins - genetics</subject><issn>1567-1348</issn><issn>1567-7257</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1OwzAQRi0EolC4AUI-ACke24mTDRIUKEiV2MDacu1J6pI_JWmlnoFLk5B2z2pGo6dPM_MIuQE2AwbR_WZWIGbezTiDpB-JRKkTcgFhpALFQ3V66EHIeEIu23bDGCjG43MyESBC4CK8ID8LLKtuXyNtsM6NxQLLjlYpdVhmW6Q732xb-gcIakpHbW7cP2BOs2PwvGqLqq5y35mS-pI-r823uaNPpsyGrHY9DPsj1BU5S03e4vWhTsnX68vn_C1Yfize54_LAEHGXWCYspBKjGIAxWUYycSEMkLHwHHnLDJIV6llURIpzuNQqEjG4ISSHEJQRkzJ7Zhbb1cFOl03vjDNXh-_0gMPI4D9FjuPjW6tx9Ki8w3aTrvKa2B60KA3etSgBw161CB-Aaxqew8</recordid><startdate>201911</startdate><enddate>201911</enddate><creator>Suzuki, Keita</creator><creator>Phadungsombat, Juthamas</creator><creator>Nakayama, Emi E.</creator><creator>Saito, Akatsuki</creator><creator>Egawa, Akio</creator><creator>Sato, Tairyu</creator><creator>Rahim, Rummana</creator><creator>Hasan, Abu</creator><creator>Lin, Marco Yung-Cheng</creator><creator>Takasaki, Tomohiko</creator><creator>Rahman, Mizanur</creator><creator>Shioda, Tatsuo</creator><general>Elsevier B.V</general><scope>6I.</scope><scope>AAFTH</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><orcidid>https://orcid.org/0000-0002-0477-0980</orcidid><orcidid>https://orcid.org/0000-0001-6739-0144</orcidid></search><sort><creationdate>201911</creationdate><title>Genotype replacement of dengue virus type 3 and clade replacement of dengue virus type 2 genotype Cosmopolitan in Dhaka, Bangladesh in 2017</title><author>Suzuki, Keita ; Phadungsombat, Juthamas ; Nakayama, Emi E. ; Saito, Akatsuki ; Egawa, Akio ; Sato, Tairyu ; Rahim, Rummana ; Hasan, Abu ; Lin, Marco Yung-Cheng ; Takasaki, Tomohiko ; Rahman, Mizanur ; Shioda, Tatsuo</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-e148t-a07c1f4e68117245649a546ed01d2ddce01fbfc069672285376481d37421517a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Bangladesh</topic><topic>Dengue</topic><topic>Dengue - virology</topic><topic>Dengue Virus - classification</topic><topic>Dengue Virus - genetics</topic><topic>DENV</topic><topic>Evolution, Molecular</topic><topic>Genotype</topic><topic>High-Throughput Nucleotide Sequencing</topic><topic>Humans</topic><topic>India</topic><topic>Phylogeny</topic><topic>Sequence Analysis, RNA</topic><topic>Serogroup</topic><topic>Viral Envelope Proteins - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Suzuki, Keita</creatorcontrib><creatorcontrib>Phadungsombat, Juthamas</creatorcontrib><creatorcontrib>Nakayama, Emi E.</creatorcontrib><creatorcontrib>Saito, Akatsuki</creatorcontrib><creatorcontrib>Egawa, Akio</creatorcontrib><creatorcontrib>Sato, Tairyu</creatorcontrib><creatorcontrib>Rahim, Rummana</creatorcontrib><creatorcontrib>Hasan, Abu</creatorcontrib><creatorcontrib>Lin, Marco Yung-Cheng</creatorcontrib><creatorcontrib>Takasaki, Tomohiko</creatorcontrib><creatorcontrib>Rahman, Mizanur</creatorcontrib><creatorcontrib>Shioda, Tatsuo</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><jtitle>Infection, genetics and evolution</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Suzuki, Keita</au><au>Phadungsombat, Juthamas</au><au>Nakayama, Emi E.</au><au>Saito, Akatsuki</au><au>Egawa, Akio</au><au>Sato, Tairyu</au><au>Rahim, Rummana</au><au>Hasan, Abu</au><au>Lin, Marco Yung-Cheng</au><au>Takasaki, Tomohiko</au><au>Rahman, Mizanur</au><au>Shioda, Tatsuo</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genotype replacement of dengue virus type 3 and clade replacement of dengue virus type 2 genotype Cosmopolitan in Dhaka, Bangladesh in 2017</atitle><jtitle>Infection, genetics and evolution</jtitle><addtitle>Infect Genet Evol</addtitle><date>2019-11</date><risdate>2019</risdate><volume>75</volume><spage>103977</spage><pages>103977-</pages><artnum>103977</artnum><issn>1567-1348</issn><eissn>1567-7257</eissn><abstract>Dengue is a mosquito-borne disease that has spread to >100 countries and is caused by the dengue virus (DENV), which belongs to the Flavivirus genus of the family Flaviviridae. DENV comprises 4 serotypes (DENV-1 to -4), and each serotype is further divided into distinct genotypes. In India, it is reported that all 4 serotypes of DENV co-circulate. Although Bangladesh is a neighboring country of India, very few reports have published DENV sequence data for the country, especially after 2012. To understand the current distribution of DENV genotypes in Bangladesh, we determined the nucleotide sequences of envelope regions obtained from 58 DENV-positive patients diagnosed at Apollo Hospitals Dhaka during the period between September 2017 and February 2018. We found 5 DENV-1, 47 DENV-2, and 6 DENV-3 serotypes. A phylogenetic analysis of the obtained viral sequences revealed that DENV-3 genotype I was present instead of DENV-3 genotype II, which was predominant in Bangladesh between 2000 and 2009. Furthermore, we found two distinct lineages of the Cosmopolitan genotype of DENV-2, one of which was closely related to strains from Southeast Asia and has never been reported previously in Bangladesh. These results indicated that DENVs in Bangladesh have increased in genotypic diversity and suggest that the DENV genotypic shift observed in other Asian countries also might have been taking place in Bangladesh.
•In 2017, dengue virus type 2 genotype Cosmopolitan dominated in Dhaka, Bangladesh.•Two distinct lineages of Cosmopolitan viruses from Malaysia and India were found.•Genotype shift of dengue virus type 3 from genotype II to I was observed.</abstract><cop>Netherlands</cop><pub>Elsevier B.V</pub><pmid>31351235</pmid><doi>10.1016/j.meegid.2019.103977</doi><orcidid>https://orcid.org/0000-0002-0477-0980</orcidid><orcidid>https://orcid.org/0000-0001-6739-0144</orcidid><oa>free_for_read</oa></addata></record> |
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| identifier | ISSN: 1567-1348 |
| ispartof | Infection, genetics and evolution, 2019-11, Vol.75, p.103977, Article 103977 |
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| language | eng |
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| source | MEDLINE; Elsevier ScienceDirect Journals |
| subjects | Bangladesh Dengue Dengue - virology Dengue Virus - classification Dengue Virus - genetics DENV Evolution, Molecular Genotype High-Throughput Nucleotide Sequencing Humans India Phylogeny Sequence Analysis, RNA Serogroup Viral Envelope Proteins - genetics |
| title | Genotype replacement of dengue virus type 3 and clade replacement of dengue virus type 2 genotype Cosmopolitan in Dhaka, Bangladesh in 2017 |
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