La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates

La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also...

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Veröffentlicht in:RNA biology 2021-02, Vol.18 (2), p.168-177
Hauptverfasser: Bayfield, Mark A., Vinayak, Jyotsna, Kerkhofs, Kyra, Mansouri-Noori, Farnaz
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container_end_page 177
container_issue 2
container_start_page 168
container_title RNA biology
container_volume 18
creator Bayfield, Mark A.
Vinayak, Jyotsna
Kerkhofs, Kyra
Mansouri-Noori, Farnaz
description La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3ʹOH recognition. Since the publication of La-UUU-3ʹOH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3ʹOH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3ʹOH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins.
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subjects Animals
Autoantigens - chemistry
Autoantigens - genetics
Autoantigens - metabolism
Binding Sites
Humans
La -related protein
La protein
Nucleic Acid Conformation
Poly A
precursor tRNA
Protein Binding
protein domain
Protein Interaction Domains and Motifs
Review
Ribonucleoproteins - chemistry
Ribonucleoproteins - genetics
Ribonucleoproteins - metabolism
Ribonucleoside Diphosphate Reductase - chemistry
Ribonucleoside Diphosphate Reductase - genetics
Ribonucleoside Diphosphate Reductase - metabolism
RNA - chemistry
RNA - genetics
RNA - metabolism
RNA binding protein
RNA chaperone
RNA Cleavage
RNA processing
RNA-Binding Proteins - chemistry
RNA-Binding Proteins - metabolism
RNA-protein interaction
SS-B Antigen
Structure-Activity Relationship
Substrate Specificity
translational control
title La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates
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