La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates
La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also...
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Veröffentlicht in: | RNA biology 2021-02, Vol.18 (2), p.168-177 |
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description | La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3ʹOH recognition. Since the publication of La-UUU-3ʹOH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3ʹOH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3ʹOH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins. |
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La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3ʹOH recognition. Since the publication of La-UUU-3ʹOH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3ʹOH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3ʹOH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins.</description><identifier>ISSN: 1547-6286</identifier><identifier>EISSN: 1555-8584</identifier><identifier>DOI: 10.1080/15476286.2019.1582955</identifier><identifier>PMID: 30777481</identifier><language>eng</language><publisher>United States: Taylor & Francis</publisher><subject>Animals ; Autoantigens - chemistry ; Autoantigens - genetics ; Autoantigens - metabolism ; Binding Sites ; Humans ; La -related protein ; La protein ; Nucleic Acid Conformation ; Poly A ; precursor tRNA ; Protein Binding ; protein domain ; Protein Interaction Domains and Motifs ; Review ; Ribonucleoproteins - chemistry ; Ribonucleoproteins - genetics ; Ribonucleoproteins - metabolism ; Ribonucleoside Diphosphate Reductase - chemistry ; Ribonucleoside Diphosphate Reductase - genetics ; Ribonucleoside Diphosphate Reductase - metabolism ; RNA - chemistry ; RNA - genetics ; RNA - metabolism ; RNA binding protein ; RNA chaperone ; RNA Cleavage ; RNA processing ; RNA-Binding Proteins - chemistry ; RNA-Binding Proteins - metabolism ; RNA-protein interaction ; SS-B Antigen ; Structure-Activity Relationship ; Substrate Specificity ; translational control</subject><ispartof>RNA biology, 2021-02, Vol.18 (2), p.168-177</ispartof><rights>2019 Informa UK Limited, trading as Taylor & Francis Group 2019</rights><rights>2019 Informa UK Limited, trading as Taylor & Francis Group 2019 Informa UK Limited, trading as Taylor & Francis Group</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c468t-d69b7f4ec86b63cd07dc70d6c249c06a71b5c01600d248a72c179e8fb3c895233</citedby><cites>FETCH-LOGICAL-c468t-d69b7f4ec86b63cd07dc70d6c249c06a71b5c01600d248a72c179e8fb3c895233</cites><orcidid>0000-0002-8971-7598</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928037/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7928037/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30777481$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Bayfield, Mark A.</creatorcontrib><creatorcontrib>Vinayak, Jyotsna</creatorcontrib><creatorcontrib>Kerkhofs, Kyra</creatorcontrib><creatorcontrib>Mansouri-Noori, Farnaz</creatorcontrib><title>La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates</title><title>RNA biology</title><addtitle>RNA Biol</addtitle><description>La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3ʹOH recognition. Since the publication of La-UUU-3ʹOH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3ʹOH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3ʹOH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins.</description><subject>Animals</subject><subject>Autoantigens - chemistry</subject><subject>Autoantigens - genetics</subject><subject>Autoantigens - metabolism</subject><subject>Binding Sites</subject><subject>Humans</subject><subject>La -related protein</subject><subject>La protein</subject><subject>Nucleic Acid Conformation</subject><subject>Poly A</subject><subject>precursor tRNA</subject><subject>Protein Binding</subject><subject>protein domain</subject><subject>Protein Interaction Domains and Motifs</subject><subject>Review</subject><subject>Ribonucleoproteins - chemistry</subject><subject>Ribonucleoproteins - genetics</subject><subject>Ribonucleoproteins - metabolism</subject><subject>Ribonucleoside Diphosphate Reductase - chemistry</subject><subject>Ribonucleoside Diphosphate Reductase - genetics</subject><subject>Ribonucleoside Diphosphate Reductase - metabolism</subject><subject>RNA - chemistry</subject><subject>RNA - genetics</subject><subject>RNA - metabolism</subject><subject>RNA binding protein</subject><subject>RNA chaperone</subject><subject>RNA Cleavage</subject><subject>RNA processing</subject><subject>RNA-Binding Proteins - chemistry</subject><subject>RNA-Binding Proteins - metabolism</subject><subject>RNA-protein interaction</subject><subject>SS-B Antigen</subject><subject>Structure-Activity Relationship</subject><subject>Substrate Specificity</subject><subject>translational control</subject><issn>1547-6286</issn><issn>1555-8584</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kcuO1DAQRSMEYh7wCSAv2aTxI35kgxiNgEFqgYRgbTnlSmOU2MFOBs3fk6h7BtiwKqt8694qnap6weiOUUNfM9loxY3accraHZOGt1I-qs6ZlLI20jSPt3ej6010Vl2U8oNSoUwrn1ZngmqtG8POK9g7MuU0Y4iFQFqmAclSkKSeFPy5YASsy4QQ-gDERU9iin8aXYg-xAMZk8dC5kQwHtwByZdPV6QsXZmzm7E8q570bij4_FQvq2_v3329vqn3nz98vL7a19AoM9detZ3uGwSjOiXAU-1BU6-ANy1Q5TTrJFCmKPW8MU5zYLpF03cC1qu4EJfVm6PvtHQjesC45g92ymF0-c4mF-y_PzF8t4d0a3XLDRV6NXh1Mshpvb3MdgwFcBhcxLQUy5kRSlLdblnyKIWcSsnYP8QwajdA9h6Q3QDZE6B17uXfOz5M3RNZBW-PghD7lEf3K-XB29ndDSn32UUIxYr_Z_wGobOhiQ</recordid><startdate>20210201</startdate><enddate>20210201</enddate><creator>Bayfield, Mark A.</creator><creator>Vinayak, Jyotsna</creator><creator>Kerkhofs, Kyra</creator><creator>Mansouri-Noori, Farnaz</creator><general>Taylor & Francis</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-8971-7598</orcidid></search><sort><creationdate>20210201</creationdate><title>La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates</title><author>Bayfield, Mark A. ; Vinayak, Jyotsna ; Kerkhofs, Kyra ; Mansouri-Noori, Farnaz</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c468t-d69b7f4ec86b63cd07dc70d6c249c06a71b5c01600d248a72c179e8fb3c895233</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Animals</topic><topic>Autoantigens - chemistry</topic><topic>Autoantigens - genetics</topic><topic>Autoantigens - metabolism</topic><topic>Binding Sites</topic><topic>Humans</topic><topic>La -related protein</topic><topic>La protein</topic><topic>Nucleic Acid Conformation</topic><topic>Poly A</topic><topic>precursor tRNA</topic><topic>Protein Binding</topic><topic>protein domain</topic><topic>Protein Interaction Domains and Motifs</topic><topic>Review</topic><topic>Ribonucleoproteins - chemistry</topic><topic>Ribonucleoproteins - genetics</topic><topic>Ribonucleoproteins - metabolism</topic><topic>Ribonucleoside Diphosphate Reductase - chemistry</topic><topic>Ribonucleoside Diphosphate Reductase - genetics</topic><topic>Ribonucleoside Diphosphate Reductase - metabolism</topic><topic>RNA - chemistry</topic><topic>RNA - genetics</topic><topic>RNA - metabolism</topic><topic>RNA binding protein</topic><topic>RNA chaperone</topic><topic>RNA Cleavage</topic><topic>RNA processing</topic><topic>RNA-Binding Proteins - chemistry</topic><topic>RNA-Binding Proteins - metabolism</topic><topic>RNA-protein interaction</topic><topic>SS-B Antigen</topic><topic>Structure-Activity Relationship</topic><topic>Substrate Specificity</topic><topic>translational control</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Bayfield, Mark A.</creatorcontrib><creatorcontrib>Vinayak, Jyotsna</creatorcontrib><creatorcontrib>Kerkhofs, Kyra</creatorcontrib><creatorcontrib>Mansouri-Noori, Farnaz</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>RNA biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Bayfield, Mark A.</au><au>Vinayak, Jyotsna</au><au>Kerkhofs, Kyra</au><au>Mansouri-Noori, Farnaz</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates</atitle><jtitle>RNA biology</jtitle><addtitle>RNA Biol</addtitle><date>2021-02-01</date><risdate>2021</risdate><volume>18</volume><issue>2</issue><spage>168</spage><epage>177</epage><pages>168-177</pages><issn>1547-6286</issn><eissn>1555-8584</eissn><abstract>La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3ʹ end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3ʹOH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3ʹOH recognition. Since the publication of La-UUU-3ʹOH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3ʹOH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3ʹOH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins.</abstract><cop>United States</cop><pub>Taylor & Francis</pub><pmid>30777481</pmid><doi>10.1080/15476286.2019.1582955</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-8971-7598</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Animals Autoantigens - chemistry Autoantigens - genetics Autoantigens - metabolism Binding Sites Humans La -related protein La protein Nucleic Acid Conformation Poly A precursor tRNA Protein Binding protein domain Protein Interaction Domains and Motifs Review Ribonucleoproteins - chemistry Ribonucleoproteins - genetics Ribonucleoproteins - metabolism Ribonucleoside Diphosphate Reductase - chemistry Ribonucleoside Diphosphate Reductase - genetics Ribonucleoside Diphosphate Reductase - metabolism RNA - chemistry RNA - genetics RNA - metabolism RNA binding protein RNA chaperone RNA Cleavage RNA processing RNA-Binding Proteins - chemistry RNA-Binding Proteins - metabolism RNA-protein interaction SS-B Antigen Structure-Activity Relationship Substrate Specificity translational control |
title | La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates |
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