Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae
Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088 and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2019-02, Vol.69 (2), p.434 |
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| container_title | International journal of systematic and evolutionary microbiology |
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| creator | Ding, Yi-Ping Khan, Inam Ullah Li, Meng-Meng Xian, Wen-Dong Liu, Lan Zhou, En-Min Salam, Nimaichand Li, Wen-Jun |
| description | Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088
and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family Comamonadaceae, sharing highest pairwise sequence identity with type strains of Piscinibacter defluvii SH-1
(97.8 and 97.7 %, respectively). They were able to grow in the temperature range of 37-50 °C, pH 5.0-9.0 and in the presence of up to 0.5 % (w/v) NaCl. Both strains were positive for catalase and oxidase reactions. Cells of the novel isolates were short-rods and motile by means of a polar flagellum. The chemotaxonomic features of the two strains include ubiquinone 8 as the respiratory isoprenologue, diphosphatidylglycerol, phosphatidylethanolamine and phoshatidylglycerol as the known polar lipids, and C16 : 0 and C17 : 0cyclo as major fatty acids. The genomic DNA of strains SYSU G00088
and YIM 73032 had G+C contents of 71.8 and 71.9%, respectively. Based on the analyses of the phylogenetic, chemotaxonomic, morphological and genomic data, the two isolates are considered to represent a novel species of a new genus, for which the name Calidifontimicrobium sediminis gen. nov., sp. nov. is proposed. The type strain of Calidifontimicrobium sediminis is SYSU G00088
(=KCTC 52671
=CGMCC 1.13597
). |
| doi_str_mv | 10.1099/ijsem.0.003167 |
| format | Article |
| fullrecord | <record><control><sourceid>pubmed</sourceid><recordid>TN_cdi_pubmed_primary_30648940</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>30648940</sourcerecordid><originalsourceid>FETCH-LOGICAL-p108t-54e8b536a769eebe32c29c65ece97d446855671e908577123027b01eb7e1e9f43</originalsourceid><addsrcrecordid>eNo1j01LxDAURYMgzji6dSn5Aba-NF_NUoqOwoAbXcqQtK-aoUlK01Hm3zugs7rnnsWFS8gNg5KBMfd-lzGUUAJwpvQZWTKhVCGBiwW5zHkHcBQAF2TBQYnaCFiSj8YOvvN9irMPvp2S8_tAM3bHFn2mnxhLGtN3eUfzeCJLI_7QgMHhRFNP5y-kvQ1-ONAmBRtStJ1t0eIVOe_tkPH6P1fk_enxrXkuNq_rl-ZhU4wM6rmQAmsnubJaGUSHvGor0yqJLRrdCaFqKZVmaKCWWrOKQ6UdMHQaj7IXfEVu_3bHvQvYbcfJBzsdtqef_BdVGFKS</addsrcrecordid><sourcetype>Index Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae</title><source>MEDLINE</source><source>Microbiology Society</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Ding, Yi-Ping ; Khan, Inam Ullah ; Li, Meng-Meng ; Xian, Wen-Dong ; Liu, Lan ; Zhou, En-Min ; Salam, Nimaichand ; Li, Wen-Jun</creator><creatorcontrib>Ding, Yi-Ping ; Khan, Inam Ullah ; Li, Meng-Meng ; Xian, Wen-Dong ; Liu, Lan ; Zhou, En-Min ; Salam, Nimaichand ; Li, Wen-Jun</creatorcontrib><description>Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088
and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family Comamonadaceae, sharing highest pairwise sequence identity with type strains of Piscinibacter defluvii SH-1
(97.8 and 97.7 %, respectively). They were able to grow in the temperature range of 37-50 °C, pH 5.0-9.0 and in the presence of up to 0.5 % (w/v) NaCl. Both strains were positive for catalase and oxidase reactions. Cells of the novel isolates were short-rods and motile by means of a polar flagellum. The chemotaxonomic features of the two strains include ubiquinone 8 as the respiratory isoprenologue, diphosphatidylglycerol, phosphatidylethanolamine and phoshatidylglycerol as the known polar lipids, and C16 : 0 and C17 : 0cyclo as major fatty acids. The genomic DNA of strains SYSU G00088
and YIM 73032 had G+C contents of 71.8 and 71.9%, respectively. Based on the analyses of the phylogenetic, chemotaxonomic, morphological and genomic data, the two isolates are considered to represent a novel species of a new genus, for which the name Calidifontimicrobium sediminis gen. nov., sp. nov. is proposed. The type strain of Calidifontimicrobium sediminis is SYSU G00088
(=KCTC 52671
=CGMCC 1.13597
).</description><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.003167</identifier><identifier>PMID: 30648940</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Comamonadaceae - classification ; Comamonadaceae - isolation & purification ; DNA, Bacterial - genetics ; Fatty Acids - chemistry ; Geologic Sediments - microbiology ; Hot Springs - microbiology ; Phospholipids - chemistry ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Tibet</subject><ispartof>International journal of systematic and evolutionary microbiology, 2019-02, Vol.69 (2), p.434</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/30648940$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ding, Yi-Ping</creatorcontrib><creatorcontrib>Khan, Inam Ullah</creatorcontrib><creatorcontrib>Li, Meng-Meng</creatorcontrib><creatorcontrib>Xian, Wen-Dong</creatorcontrib><creatorcontrib>Liu, Lan</creatorcontrib><creatorcontrib>Zhou, En-Min</creatorcontrib><creatorcontrib>Salam, Nimaichand</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><title>Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088
and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family Comamonadaceae, sharing highest pairwise sequence identity with type strains of Piscinibacter defluvii SH-1
(97.8 and 97.7 %, respectively). They were able to grow in the temperature range of 37-50 °C, pH 5.0-9.0 and in the presence of up to 0.5 % (w/v) NaCl. Both strains were positive for catalase and oxidase reactions. Cells of the novel isolates were short-rods and motile by means of a polar flagellum. The chemotaxonomic features of the two strains include ubiquinone 8 as the respiratory isoprenologue, diphosphatidylglycerol, phosphatidylethanolamine and phoshatidylglycerol as the known polar lipids, and C16 : 0 and C17 : 0cyclo as major fatty acids. The genomic DNA of strains SYSU G00088
and YIM 73032 had G+C contents of 71.8 and 71.9%, respectively. Based on the analyses of the phylogenetic, chemotaxonomic, morphological and genomic data, the two isolates are considered to represent a novel species of a new genus, for which the name Calidifontimicrobium sediminis gen. nov., sp. nov. is proposed. The type strain of Calidifontimicrobium sediminis is SYSU G00088
(=KCTC 52671
=CGMCC 1.13597
).</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Comamonadaceae - classification</subject><subject>Comamonadaceae - isolation & purification</subject><subject>DNA, Bacterial - genetics</subject><subject>Fatty Acids - chemistry</subject><subject>Geologic Sediments - microbiology</subject><subject>Hot Springs - microbiology</subject><subject>Phospholipids - chemistry</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Tibet</subject><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo1j01LxDAURYMgzji6dSn5Aba-NF_NUoqOwoAbXcqQtK-aoUlK01Hm3zugs7rnnsWFS8gNg5KBMfd-lzGUUAJwpvQZWTKhVCGBiwW5zHkHcBQAF2TBQYnaCFiSj8YOvvN9irMPvp2S8_tAM3bHFn2mnxhLGtN3eUfzeCJLI_7QgMHhRFNP5y-kvQ1-ONAmBRtStJ1t0eIVOe_tkPH6P1fk_enxrXkuNq_rl-ZhU4wM6rmQAmsnubJaGUSHvGor0yqJLRrdCaFqKZVmaKCWWrOKQ6UdMHQaj7IXfEVu_3bHvQvYbcfJBzsdtqef_BdVGFKS</recordid><startdate>201902</startdate><enddate>201902</enddate><creator>Ding, Yi-Ping</creator><creator>Khan, Inam Ullah</creator><creator>Li, Meng-Meng</creator><creator>Xian, Wen-Dong</creator><creator>Liu, Lan</creator><creator>Zhou, En-Min</creator><creator>Salam, Nimaichand</creator><creator>Li, Wen-Jun</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope></search><sort><creationdate>201902</creationdate><title>Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae</title><author>Ding, Yi-Ping ; Khan, Inam Ullah ; Li, Meng-Meng ; Xian, Wen-Dong ; Liu, Lan ; Zhou, En-Min ; Salam, Nimaichand ; Li, Wen-Jun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p108t-54e8b536a769eebe32c29c65ece97d446855671e908577123027b01eb7e1e9f43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Comamonadaceae - classification</topic><topic>Comamonadaceae - isolation & purification</topic><topic>DNA, Bacterial - genetics</topic><topic>Fatty Acids - chemistry</topic><topic>Geologic Sediments - microbiology</topic><topic>Hot Springs - microbiology</topic><topic>Phospholipids - chemistry</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Tibet</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ding, Yi-Ping</creatorcontrib><creatorcontrib>Khan, Inam Ullah</creatorcontrib><creatorcontrib>Li, Meng-Meng</creatorcontrib><creatorcontrib>Xian, Wen-Dong</creatorcontrib><creatorcontrib>Liu, Lan</creatorcontrib><creatorcontrib>Zhou, En-Min</creatorcontrib><creatorcontrib>Salam, Nimaichand</creatorcontrib><creatorcontrib>Li, Wen-Jun</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ding, Yi-Ping</au><au>Khan, Inam Ullah</au><au>Li, Meng-Meng</au><au>Xian, Wen-Dong</au><au>Liu, Lan</au><au>Zhou, En-Min</au><au>Salam, Nimaichand</au><au>Li, Wen-Jun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2019-02</date><risdate>2019</risdate><volume>69</volume><issue>2</issue><spage>434</spage><pages>434-</pages><eissn>1466-5034</eissn><abstract>Two Gram-stain-negative and facultative anaerobic bacteria, designated strains SYSU G00088
and YIM 73032, were isolated from sediment samples collected from hot springs in Tibet, China. Based on the analyses of the 16S rRNA gene sequences, the two isolates were observed to be a member of the family Comamonadaceae, sharing highest pairwise sequence identity with type strains of Piscinibacter defluvii SH-1
(97.8 and 97.7 %, respectively). They were able to grow in the temperature range of 37-50 °C, pH 5.0-9.0 and in the presence of up to 0.5 % (w/v) NaCl. Both strains were positive for catalase and oxidase reactions. Cells of the novel isolates were short-rods and motile by means of a polar flagellum. The chemotaxonomic features of the two strains include ubiquinone 8 as the respiratory isoprenologue, diphosphatidylglycerol, phosphatidylethanolamine and phoshatidylglycerol as the known polar lipids, and C16 : 0 and C17 : 0cyclo as major fatty acids. The genomic DNA of strains SYSU G00088
and YIM 73032 had G+C contents of 71.8 and 71.9%, respectively. Based on the analyses of the phylogenetic, chemotaxonomic, morphological and genomic data, the two isolates are considered to represent a novel species of a new genus, for which the name Calidifontimicrobium sediminis gen. nov., sp. nov. is proposed. The type strain of Calidifontimicrobium sediminis is SYSU G00088
(=KCTC 52671
=CGMCC 1.13597
).</abstract><cop>England</cop><pmid>30648940</pmid><doi>10.1099/ijsem.0.003167</doi></addata></record> |
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| language | eng |
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| source | MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection |
| subjects | Bacterial Typing Techniques Base Composition Comamonadaceae - classification Comamonadaceae - isolation & purification DNA, Bacterial - genetics Fatty Acids - chemistry Geologic Sediments - microbiology Hot Springs - microbiology Phospholipids - chemistry Phylogeny RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Tibet |
| title | Calidifontimicrobium sediminis gen. nov., sp. nov., a new member of the family Comamonadaceae |
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