The laterally acquired GH5 Zg EngA GH5_4 from the marine bacterium Zobellia galactanivorans is dedicated to hemicellulose hydrolysis

Cell walls of marine macroalgae are composed of diverse polysaccharides that provide abundant carbon sources for marine heterotrophic bacteria. Among them, is considered as a model for studying algae-bacteria interactions. The degradation of typical algal polysaccharides, such as agars or alginate,...

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Veröffentlicht in:Biochemical journal 2018-11, Vol.475 (22), p.3609
Hauptverfasser: Dorival, Jonathan, Ruppert, Sophie, Gunnoo, Melissa, Orłowski, Adam, Chapelais-Baron, Maylis, Dabin, Jérôme, Labourel, Aurore, Thompson, Damien, Michel, Gurvan, Czjzek, Mirjam, Genicot, Sabine
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container_issue 22
container_start_page 3609
container_title Biochemical journal
container_volume 475
creator Dorival, Jonathan
Ruppert, Sophie
Gunnoo, Melissa
Orłowski, Adam
Chapelais-Baron, Maylis
Dabin, Jérôme
Labourel, Aurore
Thompson, Damien
Michel, Gurvan
Czjzek, Mirjam
Genicot, Sabine
description Cell walls of marine macroalgae are composed of diverse polysaccharides that provide abundant carbon sources for marine heterotrophic bacteria. Among them, is considered as a model for studying algae-bacteria interactions. The degradation of typical algal polysaccharides, such as agars or alginate, has been intensively studied in this model bacterium, but the catabolism of plant-like polysaccharides is essentially uncharacterized. Here, we identify a polysaccharide utilization locus in the genome of , induced by laminarin (β-1,3-glucans), and containing a putative GH5 subfamily 4 (GH5_4) enzyme, currently annotated as a endoglucanase ( EngA ). A phylogenetic analysis indicates that EngA was laterally acquired from an ancestral We performed the biochemical and structural characterization of EngA and demonstrated that this GH5 is, in fact, an endo-β-glucanase, most active on mixed-linked glucan (MLG). Although EngA and GH16 lichenases both hydrolyze MLG, these two types of enzymes release different series of oligosaccharides. Structural analyses of EngA reveal that all the amino acid residues involved in the catalytic triad and in the negative glucose-binding subsites are conserved, when compared with the closest relative, the cellulase EngD from , and some other GH5s. In contrast, the positive glucose-binding subsites of EngA are different and this could explain the preference for MLG, with respect to cellulose or laminarin. Molecular dynamics computer simulations using different hexaoses reveal that the specificity for MLG occurs through the +1 and +2 subsites of the binding pocket that display the most important differences when compared with the structures of other GH5_4 enzymes.
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subjects Amino Acid Sequence
Bacterial Proteins - chemistry
Bacterial Proteins - genetics
Bacterial Proteins - metabolism
Flavobacteriaceae - enzymology
Flavobacteriaceae - genetics
Gene Transfer, Horizontal
Glycoside Hydrolases - classification
Glycoside Hydrolases - genetics
Glycoside Hydrolases - metabolism
Hydrolysis
Models, Molecular
Molecular Dynamics Simulation
Mutation
Phylogeny
Polysaccharides - metabolism
Protein Conformation
Seawater - microbiology
Sequence Homology, Amino Acid
Substrate Specificity
title The laterally acquired GH5 Zg EngA GH5_4 from the marine bacterium Zobellia galactanivorans is dedicated to hemicellulose hydrolysis
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