Simulation of chlorophyll fluorescence rise and decay kinetics, and P 700 -related absorbance changes by using a rule-based kinetic Monte-Carlo method
A model of primary photosynthetic reactions in the thylakoid membrane was developed and its validity was tested by simulating three types of experimental kinetic curves: (1) the light-induced chlorophyll a fluorescence rise (OJIP transients) reflecting the stepwise transition of the photosynthetic e...
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| Veröffentlicht in: | Photosynthesis research 2018-11, Vol.138 (2), p.191 |
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| creator | Antal, T K Maslakov, A Yakovleva, O V Krendeleva, T E Riznichenko, G Yu Rubin, A B |
| description | A model of primary photosynthetic reactions in the thylakoid membrane was developed and its validity was tested by simulating three types of experimental kinetic curves: (1) the light-induced chlorophyll a fluorescence rise (OJIP transients) reflecting the stepwise transition of the photosynthetic electron transport chain from the oxidized to the fully reduced state; (2) the dark relaxation of the flash-induced fluorescence yield attributed to the Q
oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P
in PSI. A model was implemented by using a rule-based kinetic Monte-Carlo method and verified by simulating experimental curves under different treatments including photosynthetic inhibitors, heat stress, anaerobic conditions, and very high light intensity. |
| doi_str_mv | 10.1007/s11120-018-0564-2 |
| format | Article |
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oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P
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oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P
in PSI. A model was implemented by using a rule-based kinetic Monte-Carlo method and verified by simulating experimental curves under different treatments including photosynthetic inhibitors, heat stress, anaerobic conditions, and very high light intensity.</description><subject>Chlorophyll - physiology</subject><subject>Computer Simulation</subject><subject>Electron Transport</subject><subject>Fluorescence</subject><subject>Kinetics</subject><subject>Models, Biological</subject><subject>Monte Carlo Method</subject><subject>Photosystem I Protein Complex</subject><subject>Photosystem II Protein Complex</subject><subject>Phototaxis - physiology</subject><subject>Thylakoids - physiology</subject><issn>1573-5079</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo1kMtKxDAYhYMgzjj6AG4kD2D0z61NlzJ4gxEFdT3k1mk1bUrSLvoiPq-3cXXgcL5vcRA6o3BJAcqrTCllQIAqArIQhB2gJZUlJxLKaoGOc34HAFVQfoQWHKBgkrMl-nxpuynosY09jjW2TYgpDs0cAq7DFJPP1vfW49Rmj3XvsPNWz_ij7f3Y2nzx2z3jEgCT5L9F3mFtckxG_2C20f3OZ2xmPOW232GN0xQ8MTp_D_cW_Bj70ZO1TiHizo9NdCfosNYh-9N9rtDb7c3r-p5snu4e1tcbMlBQI2GF4E5JqQzVlRFGKFFZUMxIZ62RtGZGCKs9o8paJpyFUirPSq4qobiu-Aqd_3mHyXTebYfUdjrN2_-D-Bct2Ges</recordid><startdate>201811</startdate><enddate>201811</enddate><creator>Antal, T K</creator><creator>Maslakov, A</creator><creator>Yakovleva, O V</creator><creator>Krendeleva, T E</creator><creator>Riznichenko, G Yu</creator><creator>Rubin, A B</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><orcidid>https://orcid.org/0000-0002-9690-8034</orcidid></search><sort><creationdate>201811</creationdate><title>Simulation of chlorophyll fluorescence rise and decay kinetics, and P 700 -related absorbance changes by using a rule-based kinetic Monte-Carlo method</title><author>Antal, T K ; Maslakov, A ; Yakovleva, O V ; Krendeleva, T E ; Riznichenko, G Yu ; Rubin, A B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-p108t-2643d8558b1a9b4b4849c082b5dccb51f2b44cae218cc24dc0758e27389483a93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Chlorophyll - physiology</topic><topic>Computer Simulation</topic><topic>Electron Transport</topic><topic>Fluorescence</topic><topic>Kinetics</topic><topic>Models, Biological</topic><topic>Monte Carlo Method</topic><topic>Photosystem I Protein Complex</topic><topic>Photosystem II Protein Complex</topic><topic>Phototaxis - physiology</topic><topic>Thylakoids - physiology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Antal, T K</creatorcontrib><creatorcontrib>Maslakov, A</creatorcontrib><creatorcontrib>Yakovleva, O V</creatorcontrib><creatorcontrib>Krendeleva, T E</creatorcontrib><creatorcontrib>Riznichenko, G Yu</creatorcontrib><creatorcontrib>Rubin, A B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><jtitle>Photosynthesis research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Antal, T K</au><au>Maslakov, A</au><au>Yakovleva, O V</au><au>Krendeleva, T E</au><au>Riznichenko, G Yu</au><au>Rubin, A B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Simulation of chlorophyll fluorescence rise and decay kinetics, and P 700 -related absorbance changes by using a rule-based kinetic Monte-Carlo method</atitle><jtitle>Photosynthesis research</jtitle><addtitle>Photosynth Res</addtitle><date>2018-11</date><risdate>2018</risdate><volume>138</volume><issue>2</issue><spage>191</spage><pages>191-</pages><eissn>1573-5079</eissn><abstract>A model of primary photosynthetic reactions in the thylakoid membrane was developed and its validity was tested by simulating three types of experimental kinetic curves: (1) the light-induced chlorophyll a fluorescence rise (OJIP transients) reflecting the stepwise transition of the photosynthetic electron transport chain from the oxidized to the fully reduced state; (2) the dark relaxation of the flash-induced fluorescence yield attributed to the Q
oxidation kinetics in PSII; and (3) the light-induced absorbance changes near 820 or 705 nm assigned to the redox transitions of P
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| ispartof | Photosynthesis research, 2018-11, Vol.138 (2), p.191 |
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| language | eng |
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| source | MEDLINE; SpringerNature Journals |
| subjects | Chlorophyll - physiology Computer Simulation Electron Transport Fluorescence Kinetics Models, Biological Monte Carlo Method Photosystem I Protein Complex Photosystem II Protein Complex Phototaxis - physiology Thylakoids - physiology |
| title | Simulation of chlorophyll fluorescence rise and decay kinetics, and P 700 -related absorbance changes by using a rule-based kinetic Monte-Carlo method |
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