Draft Genome Sequence of Daldinia eschscholzii Isolated from Blood Culture
Daldinia eschscholzii is an invasive endophyte that is most commonly found in plant tissues rich in secondary metabolites. We report the draft genome sequence of D. eschscholzii isolated from blood culture. The draft genome is 35,494,957 bp in length, with 42,898,665 reads, 61,449 contigs, and a G+C...
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| Veröffentlicht in: | Eukaryotic Cell 2012-05, Vol.11 (5), p.703-704 |
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| container_title | Eukaryotic Cell |
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| creator | Ng, Kee Peng Ngeow, Yun Fong Yew, Su Mei Hassan, Hamimah Soo-Hoo, Tuck Soon Na, Shiang Ling Chan, Chai Ling Hoh, Chee-Choong Lee, Kok-Wei Yee, Wai-Yan |
| description | Daldinia eschscholzii is an invasive endophyte that is most commonly found in plant tissues rich in secondary metabolites. We report the draft genome sequence of D. eschscholzii isolated from blood culture. The draft genome is 35,494,957 bp in length, with 42,898,665 reads, 61,449 contigs, and a G+C content of 46.8%. The genome was found to contain a high abundance of genes associated with plant cell wall degradation enzymes, mycotoxin production, and antifungal drug resistance. |
| doi_str_mv | 10.1128/EC.00074-12 |
| format | Article |
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We report the draft genome sequence of D. eschscholzii isolated from blood culture. The draft genome is 35,494,957 bp in length, with 42,898,665 reads, 61,449 contigs, and a G+C content of 46.8%. The genome was found to contain a high abundance of genes associated with plant cell wall degradation enzymes, mycotoxin production, and antifungal drug resistance.</description><identifier>ISSN: 1535-9778</identifier><identifier>ISSN: 1535-9786</identifier><identifier>EISSN: 1535-9786</identifier><identifier>DOI: 10.1128/EC.00074-12</identifier><identifier>PMID: 22544898</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>antifungal agents ; Ascomycota - genetics ; Ascomycota - isolation & purification ; Base Composition ; Base Sequence ; blood ; Blood culture ; cell walls ; Daldinia ; DNA, Fungal - analysis ; DNA, Fungal - genetics ; Drug resistance ; Endophytes ; Endophytes - genetics ; Endophytes - isolation & purification ; Enzymes ; genes ; Genome Announcements ; Genome Size ; Genome, Fungal ; Genomes ; Humans ; Mycoses - blood ; Mycoses - microbiology ; Mycotoxins ; Nucleotide sequence ; nucleotide sequences ; Plant cells ; plant tissues ; Secondary metabolites</subject><ispartof>Eukaryotic Cell, 2012-05, Vol.11 (5), p.703-704</ispartof><rights>Copyright © 2012, American Society for Microbiology. All Rights Reserved. 2012 American Society for Microbiology</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c467t-fb89471ecc8190148c586e62b202529f05459b16a7d628e77950807181f56cd13</citedby><cites>FETCH-LOGICAL-c467t-fb89471ecc8190148c586e62b202529f05459b16a7d628e77950807181f56cd13</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346430/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346430/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,315,728,781,785,886,3189,3190,27929,27930,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22544898$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ng, Kee Peng</creatorcontrib><creatorcontrib>Ngeow, Yun Fong</creatorcontrib><creatorcontrib>Yew, Su Mei</creatorcontrib><creatorcontrib>Hassan, Hamimah</creatorcontrib><creatorcontrib>Soo-Hoo, Tuck Soon</creatorcontrib><creatorcontrib>Na, Shiang Ling</creatorcontrib><creatorcontrib>Chan, Chai Ling</creatorcontrib><creatorcontrib>Hoh, Chee-Choong</creatorcontrib><creatorcontrib>Lee, Kok-Wei</creatorcontrib><creatorcontrib>Yee, Wai-Yan</creatorcontrib><title>Draft Genome Sequence of Daldinia eschscholzii Isolated from Blood Culture</title><title>Eukaryotic Cell</title><addtitle>Eukaryot Cell</addtitle><description>Daldinia eschscholzii is an invasive endophyte that is most commonly found in plant tissues rich in secondary metabolites. We report the draft genome sequence of D. eschscholzii isolated from blood culture. The draft genome is 35,494,957 bp in length, with 42,898,665 reads, 61,449 contigs, and a G+C content of 46.8%. The genome was found to contain a high abundance of genes associated with plant cell wall degradation enzymes, mycotoxin production, and antifungal drug resistance.</description><subject>antifungal agents</subject><subject>Ascomycota - genetics</subject><subject>Ascomycota - isolation & purification</subject><subject>Base Composition</subject><subject>Base Sequence</subject><subject>blood</subject><subject>Blood culture</subject><subject>cell walls</subject><subject>Daldinia</subject><subject>DNA, Fungal - analysis</subject><subject>DNA, Fungal - genetics</subject><subject>Drug resistance</subject><subject>Endophytes</subject><subject>Endophytes - genetics</subject><subject>Endophytes - isolation & purification</subject><subject>Enzymes</subject><subject>genes</subject><subject>Genome Announcements</subject><subject>Genome Size</subject><subject>Genome, Fungal</subject><subject>Genomes</subject><subject>Humans</subject><subject>Mycoses - blood</subject><subject>Mycoses - microbiology</subject><subject>Mycotoxins</subject><subject>Nucleotide sequence</subject><subject>nucleotide sequences</subject><subject>Plant cells</subject><subject>plant tissues</subject><subject>Secondary metabolites</subject><issn>1535-9778</issn><issn>1535-9786</issn><issn>1535-9786</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqNkU1v1DAQhi0EoqVw4g4-cEBCKWPHju0LEqRLKarEofRseZ3JriGJWztpBb8ely0ruCGNNCPNo3c-XkKeMzhmjOu3q_YYAJSoGH9ADpmsZWWUbh7ua6UPyJOcvwEwaVT9mBxwLoXQRh-SzyfJ9TM9xSmOSC_wesHJI409PXFDF6bgKGa_LRGHnyHQsxwHN2NH-xRH-mGIsaPtMsxLwqfkUe-GjM_u8xG5_Lj62n6qzr-cnrXvzysvGjVX_VoboRh6r5kBJrSXusGGrzlwyU0PUkizZo1TXcM1KmUkaFBMs142vmP1EXm3071a1iN2Hqc5ucFepTC69MNGF-y_nSls7Sbe2LoWjaihCLy-F0ix3JtnO4bscRjchHHJlgEHLcBo8x8oA2Ek17qgb3aoTzHnhP1-Iwb2zii7au1voyzjhX7x9xF79o8zBXi1A7Zhs70NCa3Lo8Xl-930omelVVAX7OUO6120bpNCtpcXvLy1mK1Bgqx_AZD8ofQ</recordid><startdate>20120501</startdate><enddate>20120501</enddate><creator>Ng, Kee Peng</creator><creator>Ngeow, Yun Fong</creator><creator>Yew, Su Mei</creator><creator>Hassan, Hamimah</creator><creator>Soo-Hoo, Tuck Soon</creator><creator>Na, Shiang Ling</creator><creator>Chan, Chai Ling</creator><creator>Hoh, Chee-Choong</creator><creator>Lee, Kok-Wei</creator><creator>Yee, Wai-Yan</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>M7N</scope><scope>5PM</scope></search><sort><creationdate>20120501</creationdate><title>Draft Genome Sequence of Daldinia eschscholzii Isolated from Blood Culture</title><author>Ng, Kee Peng ; Ngeow, Yun Fong ; Yew, Su Mei ; Hassan, Hamimah ; Soo-Hoo, Tuck Soon ; Na, Shiang Ling ; Chan, Chai Ling ; Hoh, Chee-Choong ; Lee, Kok-Wei ; Yee, Wai-Yan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c467t-fb89471ecc8190148c586e62b202529f05459b16a7d628e77950807181f56cd13</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>antifungal agents</topic><topic>Ascomycota - genetics</topic><topic>Ascomycota - isolation & purification</topic><topic>Base Composition</topic><topic>Base Sequence</topic><topic>blood</topic><topic>Blood culture</topic><topic>cell walls</topic><topic>Daldinia</topic><topic>DNA, Fungal - analysis</topic><topic>DNA, Fungal - genetics</topic><topic>Drug resistance</topic><topic>Endophytes</topic><topic>Endophytes - genetics</topic><topic>Endophytes - isolation & purification</topic><topic>Enzymes</topic><topic>genes</topic><topic>Genome Announcements</topic><topic>Genome Size</topic><topic>Genome, Fungal</topic><topic>Genomes</topic><topic>Humans</topic><topic>Mycoses - blood</topic><topic>Mycoses - microbiology</topic><topic>Mycotoxins</topic><topic>Nucleotide sequence</topic><topic>nucleotide sequences</topic><topic>Plant cells</topic><topic>plant tissues</topic><topic>Secondary metabolites</topic><toplevel>online_resources</toplevel><creatorcontrib>Ng, Kee Peng</creatorcontrib><creatorcontrib>Ngeow, Yun Fong</creatorcontrib><creatorcontrib>Yew, Su Mei</creatorcontrib><creatorcontrib>Hassan, Hamimah</creatorcontrib><creatorcontrib>Soo-Hoo, Tuck Soon</creatorcontrib><creatorcontrib>Na, Shiang Ling</creatorcontrib><creatorcontrib>Chan, Chai Ling</creatorcontrib><creatorcontrib>Hoh, Chee-Choong</creatorcontrib><creatorcontrib>Lee, Kok-Wei</creatorcontrib><creatorcontrib>Yee, Wai-Yan</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Eukaryotic Cell</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ng, Kee Peng</au><au>Ngeow, Yun Fong</au><au>Yew, Su Mei</au><au>Hassan, Hamimah</au><au>Soo-Hoo, Tuck Soon</au><au>Na, Shiang Ling</au><au>Chan, Chai Ling</au><au>Hoh, Chee-Choong</au><au>Lee, Kok-Wei</au><au>Yee, Wai-Yan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Draft Genome Sequence of Daldinia eschscholzii Isolated from Blood Culture</atitle><jtitle>Eukaryotic Cell</jtitle><addtitle>Eukaryot Cell</addtitle><date>2012-05-01</date><risdate>2012</risdate><volume>11</volume><issue>5</issue><spage>703</spage><epage>704</epage><pages>703-704</pages><issn>1535-9778</issn><issn>1535-9786</issn><eissn>1535-9786</eissn><abstract>Daldinia eschscholzii is an invasive endophyte that is most commonly found in plant tissues rich in secondary metabolites. We report the draft genome sequence of D. eschscholzii isolated from blood culture. The draft genome is 35,494,957 bp in length, with 42,898,665 reads, 61,449 contigs, and a G+C content of 46.8%. The genome was found to contain a high abundance of genes associated with plant cell wall degradation enzymes, mycotoxin production, and antifungal drug resistance.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>22544898</pmid><doi>10.1128/EC.00074-12</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| subjects | antifungal agents Ascomycota - genetics Ascomycota - isolation & purification Base Composition Base Sequence blood Blood culture cell walls Daldinia DNA, Fungal - analysis DNA, Fungal - genetics Drug resistance Endophytes Endophytes - genetics Endophytes - isolation & purification Enzymes genes Genome Announcements Genome Size Genome, Fungal Genomes Humans Mycoses - blood Mycoses - microbiology Mycotoxins Nucleotide sequence nucleotide sequences Plant cells plant tissues Secondary metabolites |
| title | Draft Genome Sequence of Daldinia eschscholzii Isolated from Blood Culture |
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