An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging
Purpose: In this paper, the method for the creation of an anatomically and mechanically realistic brain phantom from polyvinyl alcohol cryogel (PVA-C) is proposed for validation of image processing methods such as segmentation, reconstruction, registration, and denoising. PVA-C is material widely us...
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| Veröffentlicht in: | Medical physics (Lancaster) 2012-01, Vol.39 (1), p.554-561 |
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| creator | Chen, Sean Jy-Shyang Hellier, Pierre Marchal, Maud Gauvrit, Jean-Yves Carpentier, Romain Morandi, Xavier Collins, D. Louis |
| description | Purpose:
In this paper, the method for the creation of an anatomically and mechanically realistic brain phantom from polyvinyl alcohol cryogel (PVA-C) is proposed for validation of image processing methods such as segmentation, reconstruction, registration, and denoising. PVA-C is material widely used in medical imaging phantoms because of its mechanical similarities to soft tissues.
Methods:
The phantom was cast in a mold designed using the left hemisphere of the Colin27 brain dataset [C. Holmeset al., “Enhancement of MR images using registration for signal averaging,” J. Comput. Assist. Tomogr. 22(2), 324 (1998)]. Marker spheres and inflatable catheters were also implanted to enable good registration comparisons and to simulate tissue deformation, respectively.
Results:
The phantom contained deep sulci, a complete insular region, and an anatomically accurate left ventricle. It was found to provide good contrast in triple modality imaging, consisting of computed tomography, ultrasound, and magnetic resonance imaging. Multiple sets of multimodal data were acquired from this phantom.
Conclusions:
The methods for building the anatomically accurate, multimodality phantom were described in this work. All multimodal data are made available freely to the image processing community (http://pvabrain.inria.fr). We believe the phantom images could allow for the validation and further aid in the development of novel medical image processing techniques. |
| doi_str_mv | 10.1118/1.3673069 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmed_primary_22225325</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>915039986</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5139-75e5e8862b43e0f777814c303233dfc8b5483de77fa1c4b5715296171b2de8e03</originalsourceid><addsrcrecordid>eNqN0UFr2zAUB3AxNta066FfoOg2OnD7JFmSfRmE0LWDjPWwnoVsy7WGLLmWnZJvX4VkpQw6pssD6af_E3oInRG4JIQUV-SSCclAlO_QguaSZTmF8j1aAJR5RnPgR-g4xt8AIBiHj-iIpsUZ5Quklx5rP3VjGEIfxqGzNR6C226s3zqsXR264HA1auvx0CUZelzpaBocPF4FZz2VuA0jnqPByfSzm2wfGu2w7fWD9Q-f0IdWu2hOD_UE3X-7_rW6zdY_b76vluus5oSVmeSGm6IQtMqZgVZKWZC8ZsAoY01bFxXPC9YYKVtN6rziknBaCiJJRRtTGGAn6GKf22mnhjF1H7cqaKtul2u12wOQQnAhNyTZz3s7jOFxNnFSvY21cU57E-aoSsKBlWUhkjw_yLnqTfMS_OcHE8j24Mk6s305J6B2o1FEHUajftztSvJf9z7WdtKTDf7tO0uv_pqNGlLAl_8O-BfehPHV64amZc9Na6-u</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>915039986</pqid></control><display><type>article</type><title>An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging</title><source>Wiley Online Library - AutoHoldings Journals</source><source>MEDLINE</source><source>Alma/SFX Local Collection</source><creator>Chen, Sean Jy-Shyang ; Hellier, Pierre ; Marchal, Maud ; Gauvrit, Jean-Yves ; Carpentier, Romain ; Morandi, Xavier ; Collins, D. Louis</creator><creatorcontrib>Chen, Sean Jy-Shyang ; Hellier, Pierre ; Marchal, Maud ; Gauvrit, Jean-Yves ; Carpentier, Romain ; Morandi, Xavier ; Collins, D. Louis</creatorcontrib><description>Purpose:
In this paper, the method for the creation of an anatomically and mechanically realistic brain phantom from polyvinyl alcohol cryogel (PVA-C) is proposed for validation of image processing methods such as segmentation, reconstruction, registration, and denoising. PVA-C is material widely used in medical imaging phantoms because of its mechanical similarities to soft tissues.
Methods:
The phantom was cast in a mold designed using the left hemisphere of the Colin27 brain dataset [C. Holmeset al., “Enhancement of MR images using registration for signal averaging,” J. Comput. Assist. Tomogr. 22(2), 324 (1998)]. Marker spheres and inflatable catheters were also implanted to enable good registration comparisons and to simulate tissue deformation, respectively.
Results:
The phantom contained deep sulci, a complete insular region, and an anatomically accurate left ventricle. It was found to provide good contrast in triple modality imaging, consisting of computed tomography, ultrasound, and magnetic resonance imaging. Multiple sets of multimodal data were acquired from this phantom.
Conclusions:
The methods for building the anatomically accurate, multimodality phantom were described in this work. All multimodal data are made available freely to the image processing community (http://pvabrain.inria.fr). We believe the phantom images could allow for the validation and further aid in the development of novel medical image processing techniques.</description><identifier>ISSN: 0094-2405</identifier><identifier>EISSN: 2473-4209</identifier><identifier>DOI: 10.1118/1.3673069</identifier><identifier>PMID: 22225325</identifier><identifier>CODEN: MPHYA6</identifier><language>eng</language><publisher>United States: American Association of Physicists in Medicine</publisher><subject>anthropomorphic ; biological tissues ; Biomaterials ; Biomechanics ; biomedical materials ; biomedical MRI ; biomedical ultrasonics ; Biomimetic Materials ; brain ; Brain - anatomy & histology ; Brain - diagnostic imaging ; brain phantom ; Cell processes ; cellular biophysics ; Colin27 ; Computed tomography ; Computer Science ; Computerised tomographs ; computerised tomography ; deformation ; Diagnosis using ultrasonic, sonic or infrasonic waves ; Diagnostic Imaging - instrumentation ; Digital computing or data processing equipment or methods, specially adapted for specific applications ; Equipment Design ; Equipment Failure Analysis ; Humans ; Image data processing or generation, in general ; image datasets ; image denoising ; Image enhancement or restoration, e.g. from bit‐mapped to bit‐mapped creating a similar image ; Image processing ; image reconstruction ; image segmentation ; Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging ; Magnetic resonance imaging ; Medical image contrast ; medical image processing ; Medical image reconstruction ; Medical Imaging ; Medical magnetic resonance imaging ; neurophysiology ; organic compounds ; phantoms ; Phantoms, Imaging ; Polyvinyl Alcohol - chemistry ; PVA ; Radiography ; Solution processes ; Subtraction Technique - instrumentation ; Tissues ; Ultrasonography</subject><ispartof>Medical physics (Lancaster), 2012-01, Vol.39 (1), p.554-561</ispartof><rights>American Association of Physicists in Medicine</rights><rights>2012 American Association of Physicists in Medicine</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5139-75e5e8862b43e0f777814c303233dfc8b5483de77fa1c4b5715296171b2de8e03</citedby><cites>FETCH-LOGICAL-c5139-75e5e8862b43e0f777814c303233dfc8b5483de77fa1c4b5715296171b2de8e03</cites><orcidid>0000-0003-3603-2381 ; 0000-0002-8057-6004</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1118%2F1.3673069$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1118%2F1.3673069$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22225325$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://inria.hal.science/hal-00766567$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Chen, Sean Jy-Shyang</creatorcontrib><creatorcontrib>Hellier, Pierre</creatorcontrib><creatorcontrib>Marchal, Maud</creatorcontrib><creatorcontrib>Gauvrit, Jean-Yves</creatorcontrib><creatorcontrib>Carpentier, Romain</creatorcontrib><creatorcontrib>Morandi, Xavier</creatorcontrib><creatorcontrib>Collins, D. Louis</creatorcontrib><title>An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging</title><title>Medical physics (Lancaster)</title><addtitle>Med Phys</addtitle><description>Purpose:
In this paper, the method for the creation of an anatomically and mechanically realistic brain phantom from polyvinyl alcohol cryogel (PVA-C) is proposed for validation of image processing methods such as segmentation, reconstruction, registration, and denoising. PVA-C is material widely used in medical imaging phantoms because of its mechanical similarities to soft tissues.
Methods:
The phantom was cast in a mold designed using the left hemisphere of the Colin27 brain dataset [C. Holmeset al., “Enhancement of MR images using registration for signal averaging,” J. Comput. Assist. Tomogr. 22(2), 324 (1998)]. Marker spheres and inflatable catheters were also implanted to enable good registration comparisons and to simulate tissue deformation, respectively.
Results:
The phantom contained deep sulci, a complete insular region, and an anatomically accurate left ventricle. It was found to provide good contrast in triple modality imaging, consisting of computed tomography, ultrasound, and magnetic resonance imaging. Multiple sets of multimodal data were acquired from this phantom.
Conclusions:
The methods for building the anatomically accurate, multimodality phantom were described in this work. All multimodal data are made available freely to the image processing community (http://pvabrain.inria.fr). We believe the phantom images could allow for the validation and further aid in the development of novel medical image processing techniques.</description><subject>anthropomorphic</subject><subject>biological tissues</subject><subject>Biomaterials</subject><subject>Biomechanics</subject><subject>biomedical materials</subject><subject>biomedical MRI</subject><subject>biomedical ultrasonics</subject><subject>Biomimetic Materials</subject><subject>brain</subject><subject>Brain - anatomy & histology</subject><subject>Brain - diagnostic imaging</subject><subject>brain phantom</subject><subject>Cell processes</subject><subject>cellular biophysics</subject><subject>Colin27</subject><subject>Computed tomography</subject><subject>Computer Science</subject><subject>Computerised tomographs</subject><subject>computerised tomography</subject><subject>deformation</subject><subject>Diagnosis using ultrasonic, sonic or infrasonic waves</subject><subject>Diagnostic Imaging - instrumentation</subject><subject>Digital computing or data processing equipment or methods, specially adapted for specific applications</subject><subject>Equipment Design</subject><subject>Equipment Failure Analysis</subject><subject>Humans</subject><subject>Image data processing or generation, in general</subject><subject>image datasets</subject><subject>image denoising</subject><subject>Image enhancement or restoration, e.g. from bit‐mapped to bit‐mapped creating a similar image</subject><subject>Image processing</subject><subject>image reconstruction</subject><subject>image segmentation</subject><subject>Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging</subject><subject>Magnetic resonance imaging</subject><subject>Medical image contrast</subject><subject>medical image processing</subject><subject>Medical image reconstruction</subject><subject>Medical Imaging</subject><subject>Medical magnetic resonance imaging</subject><subject>neurophysiology</subject><subject>organic compounds</subject><subject>phantoms</subject><subject>Phantoms, Imaging</subject><subject>Polyvinyl Alcohol - chemistry</subject><subject>PVA</subject><subject>Radiography</subject><subject>Solution processes</subject><subject>Subtraction Technique - instrumentation</subject><subject>Tissues</subject><subject>Ultrasonography</subject><issn>0094-2405</issn><issn>2473-4209</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0UFr2zAUB3AxNta066FfoOg2OnD7JFmSfRmE0LWDjPWwnoVsy7WGLLmWnZJvX4VkpQw6pssD6af_E3oInRG4JIQUV-SSCclAlO_QguaSZTmF8j1aAJR5RnPgR-g4xt8AIBiHj-iIpsUZ5Quklx5rP3VjGEIfxqGzNR6C226s3zqsXR264HA1auvx0CUZelzpaBocPF4FZz2VuA0jnqPByfSzm2wfGu2w7fWD9Q-f0IdWu2hOD_UE3X-7_rW6zdY_b76vluus5oSVmeSGm6IQtMqZgVZKWZC8ZsAoY01bFxXPC9YYKVtN6rziknBaCiJJRRtTGGAn6GKf22mnhjF1H7cqaKtul2u12wOQQnAhNyTZz3s7jOFxNnFSvY21cU57E-aoSsKBlWUhkjw_yLnqTfMS_OcHE8j24Mk6s305J6B2o1FEHUajftztSvJf9z7WdtKTDf7tO0uv_pqNGlLAl_8O-BfehPHV64amZc9Na6-u</recordid><startdate>201201</startdate><enddate>201201</enddate><creator>Chen, Sean Jy-Shyang</creator><creator>Hellier, Pierre</creator><creator>Marchal, Maud</creator><creator>Gauvrit, Jean-Yves</creator><creator>Carpentier, Romain</creator><creator>Morandi, Xavier</creator><creator>Collins, D. Louis</creator><general>American Association of Physicists in Medicine</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0003-3603-2381</orcidid><orcidid>https://orcid.org/0000-0002-8057-6004</orcidid></search><sort><creationdate>201201</creationdate><title>An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging</title><author>Chen, Sean Jy-Shyang ; Hellier, Pierre ; Marchal, Maud ; Gauvrit, Jean-Yves ; Carpentier, Romain ; Morandi, Xavier ; Collins, D. Louis</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5139-75e5e8862b43e0f777814c303233dfc8b5483de77fa1c4b5715296171b2de8e03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>anthropomorphic</topic><topic>biological tissues</topic><topic>Biomaterials</topic><topic>Biomechanics</topic><topic>biomedical materials</topic><topic>biomedical MRI</topic><topic>biomedical ultrasonics</topic><topic>Biomimetic Materials</topic><topic>brain</topic><topic>Brain - anatomy & histology</topic><topic>Brain - diagnostic imaging</topic><topic>brain phantom</topic><topic>Cell processes</topic><topic>cellular biophysics</topic><topic>Colin27</topic><topic>Computed tomography</topic><topic>Computer Science</topic><topic>Computerised tomographs</topic><topic>computerised tomography</topic><topic>deformation</topic><topic>Diagnosis using ultrasonic, sonic or infrasonic waves</topic><topic>Diagnostic Imaging - instrumentation</topic><topic>Digital computing or data processing equipment or methods, specially adapted for specific applications</topic><topic>Equipment Design</topic><topic>Equipment Failure Analysis</topic><topic>Humans</topic><topic>Image data processing or generation, in general</topic><topic>image datasets</topic><topic>image denoising</topic><topic>Image enhancement or restoration, e.g. from bit‐mapped to bit‐mapped creating a similar image</topic><topic>Image processing</topic><topic>image reconstruction</topic><topic>image segmentation</topic><topic>Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging</topic><topic>Magnetic resonance imaging</topic><topic>Medical image contrast</topic><topic>medical image processing</topic><topic>Medical image reconstruction</topic><topic>Medical Imaging</topic><topic>Medical magnetic resonance imaging</topic><topic>neurophysiology</topic><topic>organic compounds</topic><topic>phantoms</topic><topic>Phantoms, Imaging</topic><topic>Polyvinyl Alcohol - chemistry</topic><topic>PVA</topic><topic>Radiography</topic><topic>Solution processes</topic><topic>Subtraction Technique - instrumentation</topic><topic>Tissues</topic><topic>Ultrasonography</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Chen, Sean Jy-Shyang</creatorcontrib><creatorcontrib>Hellier, Pierre</creatorcontrib><creatorcontrib>Marchal, Maud</creatorcontrib><creatorcontrib>Gauvrit, Jean-Yves</creatorcontrib><creatorcontrib>Carpentier, Romain</creatorcontrib><creatorcontrib>Morandi, Xavier</creatorcontrib><creatorcontrib>Collins, D. Louis</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>Hyper Article en Ligne (HAL)</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Chen, Sean Jy-Shyang</au><au>Hellier, Pierre</au><au>Marchal, Maud</au><au>Gauvrit, Jean-Yves</au><au>Carpentier, Romain</au><au>Morandi, Xavier</au><au>Collins, D. Louis</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2012-01</date><risdate>2012</risdate><volume>39</volume><issue>1</issue><spage>554</spage><epage>561</epage><pages>554-561</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><coden>MPHYA6</coden><abstract>Purpose:
In this paper, the method for the creation of an anatomically and mechanically realistic brain phantom from polyvinyl alcohol cryogel (PVA-C) is proposed for validation of image processing methods such as segmentation, reconstruction, registration, and denoising. PVA-C is material widely used in medical imaging phantoms because of its mechanical similarities to soft tissues.
Methods:
The phantom was cast in a mold designed using the left hemisphere of the Colin27 brain dataset [C. Holmeset al., “Enhancement of MR images using registration for signal averaging,” J. Comput. Assist. Tomogr. 22(2), 324 (1998)]. Marker spheres and inflatable catheters were also implanted to enable good registration comparisons and to simulate tissue deformation, respectively.
Results:
The phantom contained deep sulci, a complete insular region, and an anatomically accurate left ventricle. It was found to provide good contrast in triple modality imaging, consisting of computed tomography, ultrasound, and magnetic resonance imaging. Multiple sets of multimodal data were acquired from this phantom.
Conclusions:
The methods for building the anatomically accurate, multimodality phantom were described in this work. All multimodal data are made available freely to the image processing community (http://pvabrain.inria.fr). We believe the phantom images could allow for the validation and further aid in the development of novel medical image processing techniques.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>22225325</pmid><doi>10.1118/1.3673069</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0003-3603-2381</orcidid><orcidid>https://orcid.org/0000-0002-8057-6004</orcidid></addata></record> |
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| subjects | anthropomorphic biological tissues Biomaterials Biomechanics biomedical materials biomedical MRI biomedical ultrasonics Biomimetic Materials brain Brain - anatomy & histology Brain - diagnostic imaging brain phantom Cell processes cellular biophysics Colin27 Computed tomography Computer Science Computerised tomographs computerised tomography deformation Diagnosis using ultrasonic, sonic or infrasonic waves Diagnostic Imaging - instrumentation Digital computing or data processing equipment or methods, specially adapted for specific applications Equipment Design Equipment Failure Analysis Humans Image data processing or generation, in general image datasets image denoising Image enhancement or restoration, e.g. from bit‐mapped to bit‐mapped creating a similar image Image processing image reconstruction image segmentation Involving electronic [emr] or nuclear [nmr] magnetic resonance, e.g. magnetic resonance imaging Magnetic resonance imaging Medical image contrast medical image processing Medical image reconstruction Medical Imaging Medical magnetic resonance imaging neurophysiology organic compounds phantoms Phantoms, Imaging Polyvinyl Alcohol - chemistry PVA Radiography Solution processes Subtraction Technique - instrumentation Tissues Ultrasonography |
| title | An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging |
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