Quantifying Complex Shapes: Elliptical Fourier Analysis of Octocoral Sclerites
Species descriptions of most alcyonacean octocorals rely heavily on the morphology of sclerites, the calcium carbonate spicules embedded in the soft tissue. Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing...
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Veröffentlicht in: | The Biological bulletin (Lancaster) 2011-06, Vol.220 (3), p.224-237 |
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description | Species descriptions of most alcyonacean octocorals rely heavily on the morphology of sclerites, the calcium carbonate spicules embedded in the soft tissue. Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing morphological features. Elliptical Fourier analysis of the outline of sclerites was used to quantify the morphology of eight species of gorgoniid octocoral in the genus Pseudopterogorgia. Sclerites from one to seven colonies of each species were compared. Scaphoids and spindles were examined separately; rods and octoradiates were excluded from the analyses because of their morphologic similarity across all species. Discriminant analysis of elliptical Fourier descriptors (EFDs) was used to determine whether the elliptical Fourier analysis could be used to identify the specimens. Sclerites were highly variable even within a single colony. Correct species assignments of individual sclerites were greater than 50% for both scaphoids and spindles. Species assignments based on averages of the EFDs for each colony approached 90%. Elliptical Fourier analysis quantifies morphological differences between species and measures colony variance in sclerite size and shape among colonies and species. Phylogenetic analysis based on EFDs did not capture monophyletic groups. The quantification of complex shapes such as sclerites provides an important tool in alpha taxonomy but may be less useful in phylogenetic analyses. |
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Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing morphological features. Elliptical Fourier analysis of the outline of sclerites was used to quantify the morphology of eight species of gorgoniid octocoral in the genus Pseudopterogorgia. Sclerites from one to seven colonies of each species were compared. Scaphoids and spindles were examined separately; rods and octoradiates were excluded from the analyses because of their morphologic similarity across all species. Discriminant analysis of elliptical Fourier descriptors (EFDs) was used to determine whether the elliptical Fourier analysis could be used to identify the specimens. Sclerites were highly variable even within a single colony. Correct species assignments of individual sclerites were greater than 50% for both scaphoids and spindles. Species assignments based on averages of the EFDs for each colony approached 90%. Elliptical Fourier analysis quantifies morphological differences between species and measures colony variance in sclerite size and shape among colonies and species. Phylogenetic analysis based on EFDs did not capture monophyletic groups. The quantification of complex shapes such as sclerites provides an important tool in alpha taxonomy but may be less useful in phylogenetic analyses.</description><identifier>ISSN: 0006-3185</identifier><identifier>EISSN: 1939-8697</identifier><identifier>DOI: 10.1086/BBLv220n3p224</identifier><identifier>PMID: 21712230</identifier><language>eng</language><publisher>United States: Marine Biological Laboratory</publisher><subject>Animals ; Anthozoa - classification ; Anthozoa - ultrastructure ; Biological taxonomies ; Calcium carbonate ; Calcium Carbonate - chemistry ; Caribbean Region ; Coral reefs ; Discriminant Analysis ; Discriminants ; Fourier Analysis ; Genetic variation ; Holotypes ; Keys ; Marine ; Morphology ; Phylogenetics ; Phylogeny ; Pseudopterogorgia ; Soft corals ; Species ; Specimens ; SYSTEMATICS ; Tissues</subject><ispartof>The Biological bulletin (Lancaster), 2011-06, Vol.220 (3), p.224-237</ispartof><rights>Copyright © 2011 Marine Biological Laboratory</rights><rights>COPYRIGHT 2011 University of Chicago Press</rights><rights>COPYRIGHT 2011 University of Chicago Press</rights><rights>Copyright Marine Biological Laboratory Jun 1, 2011</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c620t-55213328a201eb606ecd3d1afecf534e29af0e59f939463486853179cbc2b4a3</citedby><cites>FETCH-LOGICAL-c620t-55213328a201eb606ecd3d1afecf534e29af0e59f939463486853179cbc2b4a3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/23046947$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/23046947$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>314,780,784,803,27923,27924,58016,58249</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21712230$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>CARLO, JOSEPH M.</creatorcontrib><creatorcontrib>BARBEITOS, MARCOS S.</creatorcontrib><creatorcontrib>LASKER, HOWARD R.</creatorcontrib><title>Quantifying Complex Shapes: Elliptical Fourier Analysis of Octocoral Sclerites</title><title>The Biological bulletin (Lancaster)</title><addtitle>Biol Bull</addtitle><description>Species descriptions of most alcyonacean octocorals rely heavily on the morphology of sclerites, the calcium carbonate spicules embedded in the soft tissue. Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing morphological features. Elliptical Fourier analysis of the outline of sclerites was used to quantify the morphology of eight species of gorgoniid octocoral in the genus Pseudopterogorgia. Sclerites from one to seven colonies of each species were compared. Scaphoids and spindles were examined separately; rods and octoradiates were excluded from the analyses because of their morphologic similarity across all species. Discriminant analysis of elliptical Fourier descriptors (EFDs) was used to determine whether the elliptical Fourier analysis could be used to identify the specimens. Sclerites were highly variable even within a single colony. Correct species assignments of individual sclerites were greater than 50% for both scaphoids and spindles. Species assignments based on averages of the EFDs for each colony approached 90%. Elliptical Fourier analysis quantifies morphological differences between species and measures colony variance in sclerite size and shape among colonies and species. Phylogenetic analysis based on EFDs did not capture monophyletic groups. The quantification of complex shapes such as sclerites provides an important tool in alpha taxonomy but may be less useful in phylogenetic analyses.</description><subject>Animals</subject><subject>Anthozoa - classification</subject><subject>Anthozoa - ultrastructure</subject><subject>Biological taxonomies</subject><subject>Calcium carbonate</subject><subject>Calcium Carbonate - chemistry</subject><subject>Caribbean Region</subject><subject>Coral reefs</subject><subject>Discriminant Analysis</subject><subject>Discriminants</subject><subject>Fourier Analysis</subject><subject>Genetic variation</subject><subject>Holotypes</subject><subject>Keys</subject><subject>Marine</subject><subject>Morphology</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pseudopterogorgia</subject><subject>Soft corals</subject><subject>Species</subject><subject>Specimens</subject><subject>SYSTEMATICS</subject><subject>Tissues</subject><issn>0006-3185</issn><issn>1939-8697</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqN0s1v0zAUAPAIgVgZHDmCIjgghDL8Fcfm1lXbmFStQt09ct2XzJUbZ7aD1v8eVy1DnSpAPli2f356z35Z9hajM4wE_3p-Pv1JCOpoTwh7lo2wpLIQXFbPsxFCiBcUi_IkexXCKi0RwexldkJwhQmhaJTd_BhUF02zMV2bT9y6t_CQz-9UD-FbfmGt6aPRyuaXbvAGfD7ulN0EE3LX5DMdnXY-nc61BW8ihNfZi0bZAG_282l2e3lxO_leTGdX15PxtNCcoFiUJcGUEqEIwrDgiINe0iVWDeimpAyIVA2CUjapGMYpE1yUFFdSLzRZMEVPs0-7sL139wOEWK9N0GCt6sANoZaIsapEQvxTiooRKTgnSX54Ilep5lTuFnFUSYpwQh93qFUWatM1LnqltyHrMeFYVFhKmlRxRLXQQXos10Fj0vaBPzvi01jC2uijFz4fXEgmwkNs1RBCfT2_-W8rrqZ_S3xvtbMWWqjTF05mR732LgQPTd17s1Z-U2NUb9uzPmjP5N_v33hYrGH5qH_3YwJfdmDQd6nvWtd7SGk-_sTTcO92ehWi83-iUcS4ZBX9BcKd8sY</recordid><startdate>20110601</startdate><enddate>20110601</enddate><creator>CARLO, JOSEPH M.</creator><creator>BARBEITOS, MARCOS S.</creator><creator>LASKER, HOWARD R.</creator><general>Marine Biological Laboratory</general><general>University of Chicago Press</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>8GL</scope><scope>ISN</scope><scope>7QG</scope><scope>7QP</scope><scope>7QR</scope><scope>7TK</scope><scope>7TN</scope><scope>8FD</scope><scope>F1W</scope><scope>FR3</scope><scope>H95</scope><scope>K9.</scope><scope>L.G</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20110601</creationdate><title>Quantifying Complex Shapes: Elliptical Fourier Analysis of Octocoral Sclerites</title><author>CARLO, JOSEPH M. ; BARBEITOS, MARCOS S. ; LASKER, HOWARD R.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c620t-55213328a201eb606ecd3d1afecf534e29af0e59f939463486853179cbc2b4a3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Animals</topic><topic>Anthozoa - classification</topic><topic>Anthozoa - ultrastructure</topic><topic>Biological taxonomies</topic><topic>Calcium carbonate</topic><topic>Calcium Carbonate - chemistry</topic><topic>Caribbean Region</topic><topic>Coral reefs</topic><topic>Discriminant Analysis</topic><topic>Discriminants</topic><topic>Fourier Analysis</topic><topic>Genetic variation</topic><topic>Holotypes</topic><topic>Keys</topic><topic>Marine</topic><topic>Morphology</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Pseudopterogorgia</topic><topic>Soft corals</topic><topic>Species</topic><topic>Specimens</topic><topic>SYSTEMATICS</topic><topic>Tissues</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>CARLO, JOSEPH M.</creatorcontrib><creatorcontrib>BARBEITOS, MARCOS S.</creatorcontrib><creatorcontrib>LASKER, HOWARD R.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Gale In Context: High School</collection><collection>Gale In Context: Canada</collection><collection>Animal Behavior Abstracts</collection><collection>Calcium & Calcified Tissue Abstracts</collection><collection>Chemoreception Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Oceanic Abstracts</collection><collection>Technology Research Database</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 1: Biological Sciences & Living Resources</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>The Biological bulletin (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>CARLO, JOSEPH M.</au><au>BARBEITOS, MARCOS S.</au><au>LASKER, HOWARD R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Quantifying Complex Shapes: Elliptical Fourier Analysis of Octocoral Sclerites</atitle><jtitle>The Biological bulletin (Lancaster)</jtitle><addtitle>Biol Bull</addtitle><date>2011-06-01</date><risdate>2011</risdate><volume>220</volume><issue>3</issue><spage>224</spage><epage>237</epage><pages>224-237</pages><issn>0006-3185</issn><eissn>1939-8697</eissn><abstract>Species descriptions of most alcyonacean octocorals rely heavily on the morphology of sclerites, the calcium carbonate spicules embedded in the soft tissue. Sclerites provide taxonomic characters for species delineation but require qualitative descriptions, which introduce ambiguities in recognizing morphological features. Elliptical Fourier analysis of the outline of sclerites was used to quantify the morphology of eight species of gorgoniid octocoral in the genus Pseudopterogorgia. Sclerites from one to seven colonies of each species were compared. Scaphoids and spindles were examined separately; rods and octoradiates were excluded from the analyses because of their morphologic similarity across all species. Discriminant analysis of elliptical Fourier descriptors (EFDs) was used to determine whether the elliptical Fourier analysis could be used to identify the specimens. Sclerites were highly variable even within a single colony. Correct species assignments of individual sclerites were greater than 50% for both scaphoids and spindles. Species assignments based on averages of the EFDs for each colony approached 90%. 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subjects | Animals Anthozoa - classification Anthozoa - ultrastructure Biological taxonomies Calcium carbonate Calcium Carbonate - chemistry Caribbean Region Coral reefs Discriminant Analysis Discriminants Fourier Analysis Genetic variation Holotypes Keys Marine Morphology Phylogenetics Phylogeny Pseudopterogorgia Soft corals Species Specimens SYSTEMATICS Tissues |
title | Quantifying Complex Shapes: Elliptical Fourier Analysis of Octocoral Sclerites |
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