Semiautomated four-dimensional computed tomography segmentation using deformable models
The purpose of this work is to demonstrate a proof of feasibility of the application of a commercial prototype deformable model algorithm to the problem of delineation of anatomic structures on four-dimensional (4D) computed tomography (CT) image data sets. We acquired a 4D CT image data set of a pa...
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Veröffentlicht in: | Medical physics (Lancaster) 2005-07, Vol.32 (7), p.2254-2261 |
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description | The purpose of this work is to demonstrate a proof of feasibility of the application of a commercial prototype deformable model algorithm to the problem of delineation of anatomic structures on four-dimensional (4D) computed tomography (CT) image data sets. We acquired a 4D CT image data set of a patient’s thorax that consisted of three-dimensional (3D) image data sets from eight phases in the respiratory cycle. The contours of the right and left lungs, cord, heart, and esophagus were manually delineated on the end inspiration data set. An interactive deformable model algorithm, originally intended for deforming an atlas-based model surface to a 3D CT image data set, was applied in an automated fashion. Triangulations based on the contours generated on each phase were deformed to the CT data set on the succeeding phase to generate the contours on that phase. Deformation was propagated through the eight phases, and the contours obtained on the end inspiration data set were compared with the original manually delineated contours. Structures defined by high-density gradients, such as lungs, cord, and heart, were accurately reproduced, except in regions where other gradient boundaries may have confused the algorithm, such as near bronchi. The algorithm failed to accurately contour the esophagus, a soft-tissue structure completely surrounded by tissue of similar density, without manual interaction. This technique has the potential to facilitate contour delineation in 4D CT image data sets; and future evolution of the software is expected to improve the process. |
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We acquired a 4D CT image data set of a patient’s thorax that consisted of three-dimensional (3D) image data sets from eight phases in the respiratory cycle. The contours of the right and left lungs, cord, heart, and esophagus were manually delineated on the end inspiration data set. An interactive deformable model algorithm, originally intended for deforming an atlas-based model surface to a 3D CT image data set, was applied in an automated fashion. Triangulations based on the contours generated on each phase were deformed to the CT data set on the succeeding phase to generate the contours on that phase. Deformation was propagated through the eight phases, and the contours obtained on the end inspiration data set were compared with the original manually delineated contours. Structures defined by high-density gradients, such as lungs, cord, and heart, were accurately reproduced, except in regions where other gradient boundaries may have confused the algorithm, such as near bronchi. The algorithm failed to accurately contour the esophagus, a soft-tissue structure completely surrounded by tissue of similar density, without manual interaction. This technique has the potential to facilitate contour delineation in 4D CT image data sets; and future evolution of the software is expected to improve the process.</description><identifier>ISSN: 0094-2405</identifier><identifier>EISSN: 2473-4209</identifier><identifier>DOI: 10.1118/1.1929207</identifier><identifier>PMID: 16121580</identifier><identifier>CODEN: MPHYA6</identifier><language>eng</language><publisher>United States: American Association of Physicists in Medicine</publisher><subject>4D imaging ; ALGORITHMS ; Anatomy ; Artificial Intelligence ; biological organs ; biological tissues ; BRONCHI ; Cardiac dynamics ; cardiology ; CHEST ; Computed radiography ; Computed tomography ; COMPUTER CODES ; Computer Simulation ; Computer software ; computerised tomography ; COMPUTERIZED TOMOGRAPHY ; CT segmentation ; deformable models ; Elasticity ; ESOPHAGUS ; HEART ; Hemodynamics ; Humans ; IMAGE PROCESSING ; image segmentation ; Imaging, Three-Dimensional - methods ; Information Storage and Retrieval - methods ; lung ; LUNGS ; medical image processing ; Medical imaging ; Medical treatment planning ; Models, Biological ; Movement ; PATIENTS ; Pneumodyamics, respiration ; pneumodynamics ; Radiation treatment ; Radiographic Image Enhancement - methods ; Radiographic Image Interpretation, Computer-Assisted - methods ; Radiography, Thoracic - methods ; RADIOLOGY AND NUCLEAR MEDICINE ; Reproducibility of Results ; Respiration ; Sensitivity and Specificity ; Subtraction Technique ; Tissues ; Tomography, X-Ray Computed - methods</subject><ispartof>Medical physics (Lancaster), 2005-07, Vol.32 (7), p.2254-2261</ispartof><rights>American Association of Physicists in Medicine</rights><rights>2005 American Association of Physicists in Medicine</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c4547-415e41be3e5afbe3b594be0d1b96d5dc3017c0cad81630c93113c5438a9016a43</citedby><cites>FETCH-LOGICAL-c4547-415e41be3e5afbe3b594be0d1b96d5dc3017c0cad81630c93113c5438a9016a43</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1118%2F1.1929207$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1118%2F1.1929207$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,780,784,885,1417,27924,27925,45574,45575</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/16121580$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/20726087$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Ragan, Dustin</creatorcontrib><creatorcontrib>Starkschall, George</creatorcontrib><creatorcontrib>McNutt, Todd</creatorcontrib><creatorcontrib>Kaus, Michael</creatorcontrib><creatorcontrib>Guerrero, Thomas</creatorcontrib><creatorcontrib>Stevens, Craig W.</creatorcontrib><title>Semiautomated four-dimensional computed tomography segmentation using deformable models</title><title>Medical physics (Lancaster)</title><addtitle>Med Phys</addtitle><description>The purpose of this work is to demonstrate a proof of feasibility of the application of a commercial prototype deformable model algorithm to the problem of delineation of anatomic structures on four-dimensional (4D) computed tomography (CT) image data sets. We acquired a 4D CT image data set of a patient’s thorax that consisted of three-dimensional (3D) image data sets from eight phases in the respiratory cycle. The contours of the right and left lungs, cord, heart, and esophagus were manually delineated on the end inspiration data set. An interactive deformable model algorithm, originally intended for deforming an atlas-based model surface to a 3D CT image data set, was applied in an automated fashion. Triangulations based on the contours generated on each phase were deformed to the CT data set on the succeeding phase to generate the contours on that phase. Deformation was propagated through the eight phases, and the contours obtained on the end inspiration data set were compared with the original manually delineated contours. Structures defined by high-density gradients, such as lungs, cord, and heart, were accurately reproduced, except in regions where other gradient boundaries may have confused the algorithm, such as near bronchi. The algorithm failed to accurately contour the esophagus, a soft-tissue structure completely surrounded by tissue of similar density, without manual interaction. This technique has the potential to facilitate contour delineation in 4D CT image data sets; and future evolution of the software is expected to improve the process.</description><subject>4D imaging</subject><subject>ALGORITHMS</subject><subject>Anatomy</subject><subject>Artificial Intelligence</subject><subject>biological organs</subject><subject>biological tissues</subject><subject>BRONCHI</subject><subject>Cardiac dynamics</subject><subject>cardiology</subject><subject>CHEST</subject><subject>Computed radiography</subject><subject>Computed tomography</subject><subject>COMPUTER CODES</subject><subject>Computer Simulation</subject><subject>Computer software</subject><subject>computerised tomography</subject><subject>COMPUTERIZED TOMOGRAPHY</subject><subject>CT segmentation</subject><subject>deformable models</subject><subject>Elasticity</subject><subject>ESOPHAGUS</subject><subject>HEART</subject><subject>Hemodynamics</subject><subject>Humans</subject><subject>IMAGE PROCESSING</subject><subject>image segmentation</subject><subject>Imaging, Three-Dimensional - methods</subject><subject>Information Storage and Retrieval - methods</subject><subject>lung</subject><subject>LUNGS</subject><subject>medical image processing</subject><subject>Medical imaging</subject><subject>Medical treatment planning</subject><subject>Models, Biological</subject><subject>Movement</subject><subject>PATIENTS</subject><subject>Pneumodyamics, respiration</subject><subject>pneumodynamics</subject><subject>Radiation treatment</subject><subject>Radiographic Image Enhancement - methods</subject><subject>Radiographic Image Interpretation, Computer-Assisted - methods</subject><subject>Radiography, Thoracic - methods</subject><subject>RADIOLOGY AND NUCLEAR MEDICINE</subject><subject>Reproducibility of Results</subject><subject>Respiration</subject><subject>Sensitivity and Specificity</subject><subject>Subtraction Technique</subject><subject>Tissues</subject><subject>Tomography, X-Ray Computed - methods</subject><issn>0094-2405</issn><issn>2473-4209</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2005</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp90V2L1TAQBuAgintcvfAPSEFYROg60yRtciPI4sfCioKKlyFNpmcrbdNt2pXz7009R1aR3au5mCczZF7GniKcIqJ6haeoC11AdY9tClHxXBSg77MNgBZ5IUAesUcx_gCAkkt4yI6wxAKlgg37_oX61i5z6O1MPmvCMuW-7WmIbRhsl7nQj8vaSSJsJzte7rJI2wRmOyeSLbEdtpmnJky9rTvK-uCpi4_Zg8Z2kZ4c6jH79u7t17MP-cWn9-dnby5yJ6SocoGSBNbESdomlVpqURN4rHXppXccsHLgrFdYcnCaI3InBVdWA5ZW8GP2fD83xLk10bUzuUsXhoHcbNJFihJUldTJXo1TuFoozqZvo6OuswOFJZpSSSy14gm-uBOi0pUCLqBI9NmBLnVP3oxT29tpZ_7cNoF8D362He1u-mDW0AyaQ2jm4-e1JP9679df_D7u7W_-Sc2sqRmfBry8bcB1mP5aOPrmLvzfNv4LGz25xA</recordid><startdate>200507</startdate><enddate>200507</enddate><creator>Ragan, Dustin</creator><creator>Starkschall, George</creator><creator>McNutt, Todd</creator><creator>Kaus, Michael</creator><creator>Guerrero, Thomas</creator><creator>Stevens, Craig W.</creator><general>American Association of Physicists in Medicine</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>7X8</scope><scope>OTOTI</scope></search><sort><creationdate>200507</creationdate><title>Semiautomated four-dimensional computed tomography segmentation using deformable models</title><author>Ragan, Dustin ; Starkschall, George ; McNutt, Todd ; Kaus, Michael ; Guerrero, Thomas ; Stevens, Craig W.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4547-415e41be3e5afbe3b594be0d1b96d5dc3017c0cad81630c93113c5438a9016a43</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2005</creationdate><topic>4D imaging</topic><topic>ALGORITHMS</topic><topic>Anatomy</topic><topic>Artificial Intelligence</topic><topic>biological organs</topic><topic>biological tissues</topic><topic>BRONCHI</topic><topic>Cardiac dynamics</topic><topic>cardiology</topic><topic>CHEST</topic><topic>Computed radiography</topic><topic>Computed tomography</topic><topic>COMPUTER CODES</topic><topic>Computer Simulation</topic><topic>Computer software</topic><topic>computerised tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>CT segmentation</topic><topic>deformable models</topic><topic>Elasticity</topic><topic>ESOPHAGUS</topic><topic>HEART</topic><topic>Hemodynamics</topic><topic>Humans</topic><topic>IMAGE PROCESSING</topic><topic>image segmentation</topic><topic>Imaging, Three-Dimensional - methods</topic><topic>Information Storage and Retrieval - methods</topic><topic>lung</topic><topic>LUNGS</topic><topic>medical image processing</topic><topic>Medical imaging</topic><topic>Medical treatment planning</topic><topic>Models, Biological</topic><topic>Movement</topic><topic>PATIENTS</topic><topic>Pneumodyamics, respiration</topic><topic>pneumodynamics</topic><topic>Radiation treatment</topic><topic>Radiographic Image Enhancement - methods</topic><topic>Radiographic Image Interpretation, Computer-Assisted - methods</topic><topic>Radiography, Thoracic - methods</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Reproducibility of Results</topic><topic>Respiration</topic><topic>Sensitivity and Specificity</topic><topic>Subtraction Technique</topic><topic>Tissues</topic><topic>Tomography, X-Ray Computed - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ragan, Dustin</creatorcontrib><creatorcontrib>Starkschall, George</creatorcontrib><creatorcontrib>McNutt, Todd</creatorcontrib><creatorcontrib>Kaus, Michael</creatorcontrib><creatorcontrib>Guerrero, Thomas</creatorcontrib><creatorcontrib>Stevens, Craig W.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ragan, Dustin</au><au>Starkschall, George</au><au>McNutt, Todd</au><au>Kaus, Michael</au><au>Guerrero, Thomas</au><au>Stevens, Craig W.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Semiautomated four-dimensional computed tomography segmentation using deformable models</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2005-07</date><risdate>2005</risdate><volume>32</volume><issue>7</issue><spage>2254</spage><epage>2261</epage><pages>2254-2261</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><coden>MPHYA6</coden><abstract>The purpose of this work is to demonstrate a proof of feasibility of the application of a commercial prototype deformable model algorithm to the problem of delineation of anatomic structures on four-dimensional (4D) computed tomography (CT) image data sets. We acquired a 4D CT image data set of a patient’s thorax that consisted of three-dimensional (3D) image data sets from eight phases in the respiratory cycle. The contours of the right and left lungs, cord, heart, and esophagus were manually delineated on the end inspiration data set. An interactive deformable model algorithm, originally intended for deforming an atlas-based model surface to a 3D CT image data set, was applied in an automated fashion. Triangulations based on the contours generated on each phase were deformed to the CT data set on the succeeding phase to generate the contours on that phase. Deformation was propagated through the eight phases, and the contours obtained on the end inspiration data set were compared with the original manually delineated contours. Structures defined by high-density gradients, such as lungs, cord, and heart, were accurately reproduced, except in regions where other gradient boundaries may have confused the algorithm, such as near bronchi. The algorithm failed to accurately contour the esophagus, a soft-tissue structure completely surrounded by tissue of similar density, without manual interaction. This technique has the potential to facilitate contour delineation in 4D CT image data sets; and future evolution of the software is expected to improve the process.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>16121580</pmid><doi>10.1118/1.1929207</doi><tpages>8</tpages></addata></record> |
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subjects | 4D imaging ALGORITHMS Anatomy Artificial Intelligence biological organs biological tissues BRONCHI Cardiac dynamics cardiology CHEST Computed radiography Computed tomography COMPUTER CODES Computer Simulation Computer software computerised tomography COMPUTERIZED TOMOGRAPHY CT segmentation deformable models Elasticity ESOPHAGUS HEART Hemodynamics Humans IMAGE PROCESSING image segmentation Imaging, Three-Dimensional - methods Information Storage and Retrieval - methods lung LUNGS medical image processing Medical imaging Medical treatment planning Models, Biological Movement PATIENTS Pneumodyamics, respiration pneumodynamics Radiation treatment Radiographic Image Enhancement - methods Radiographic Image Interpretation, Computer-Assisted - methods Radiography, Thoracic - methods RADIOLOGY AND NUCLEAR MEDICINE Reproducibility of Results Respiration Sensitivity and Specificity Subtraction Technique Tissues Tomography, X-Ray Computed - methods |
title | Semiautomated four-dimensional computed tomography segmentation using deformable models |
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