Linkage and comparative mapping of the locus controlling susceptibility towards E. coli F4ab/ac diarrhoea in pigs
In 1995, Edfors-Lilja and coworkers mapped the locus for the E. coli K88ab (F4ab) and K88ac (F4ac) intestinal receptor to pig chromosome 13 (SSC13). Using the same family material we have refined the map position to a region between the microsatellite markers Sw207 and Sw225. Primers from these mark...
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| Veröffentlicht in: | Cytogenetic and Genome Research 2003-01, Vol.102 (1-4), p.157-162 |
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| creator | Jørgensen, C.B. Cirera, S. Anderson, S.I. Archibald, A.L. Raudsepp, T. Chowdhary, B. Edfors-Lilja, I. Andersson, L. Fredholm, M. |
| description | In 1995, Edfors-Lilja and coworkers mapped the locus for the E. coli K88ab (F4ab) and K88ac (F4ac) intestinal receptor to pig chromosome 13 (SSC13). Using the same family material we have refined the map position to a region between the microsatellite markers Sw207 and Sw225. Primers from these markers were used to screen a pig BAC library and the positive clones were used for fluorescent in situ hybridization (FISH) analysis. The results of the FISH analysis helped to propose a candidate gene region in the SSC13q41→q44 interval. Shotgun sequencing of the FISH-mapped BAC clones revealed that the candidate region contains an evolutionary breakpoint between human and pig. In order to further characterise the rearrangements between SSC13 and human chromosome 3 (HSA3), detailed gene mapping of SSC13 was carried out. Based on this mapping data we have constructed a detailed comparative map between SSC13 and HSA3. Two candidate regions on human chromosome 3 have been identified that are likely to harbour the human homologue of the gene responsible for susceptibility towards E. coli F4ab/ac diarrhoea in pigs. |
| doi_str_mv | 10.1159/000075742 |
| format | Article |
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Using the same family material we have refined the map position to a region between the microsatellite markers Sw207 and Sw225. Primers from these markers were used to screen a pig BAC library and the positive clones were used for fluorescent in situ hybridization (FISH) analysis. The results of the FISH analysis helped to propose a candidate gene region in the SSC13q41→q44 interval. Shotgun sequencing of the FISH-mapped BAC clones revealed that the candidate region contains an evolutionary breakpoint between human and pig. In order to further characterise the rearrangements between SSC13 and human chromosome 3 (HSA3), detailed gene mapping of SSC13 was carried out. Based on this mapping data we have constructed a detailed comparative map between SSC13 and HSA3. Two candidate regions on human chromosome 3 have been identified that are likely to harbour the human homologue of the gene responsible for susceptibility towards E. coli F4ab/ac diarrhoea in pigs. </description><identifier>ISSN: 1424-8581</identifier><identifier>ISSN: 1424-859X</identifier><identifier>ISBN: 3805577346</identifier><identifier>ISBN: 9783805577342</identifier><identifier>EISSN: 1424-859X</identifier><identifier>EISBN: 3318010766</identifier><identifier>EISBN: 9783318010763</identifier><identifier>DOI: 10.1159/000075742</identifier><identifier>PMID: 14970696</identifier><language>eng</language><publisher>Basel, Switzerland: S. Karger AG</publisher><subject>Animals ; Animals, Domestic ; Animals, Wild ; Antigens, Bacterial - immunology ; Chromosome Mapping - methods ; Chromosome Mapping - veterinary ; Chromosome Mapping/methods/veterinary ; Comparative Study ; Crosses, Genetic ; Cytogenetic Analysis - methods ; Cytogenetic Analysis - veterinary ; Cytogenetic Analysis/methods/veterinary ; Diarrhea - genetics ; Diarrhea - microbiology ; Diarrhea - veterinary ; Diarrhea/genetics/microbiology/veterinary ; Escherichia coli ; Escherichia coli - immunology ; Escherichia coli Infections - genetics ; Escherichia coli Infections - veterinary ; Escherichia coli Infections/genetics/veterinary ; Escherichia coli Proteins - immunology ; Female ; Fimbriae Proteins - immunology ; Genetic Linkage - genetics ; Genetic Predisposition to Disease ; Genotype ; Humans ; In Situ Hybridization, Fluorescence - methods ; In Situ Hybridization, Fluorescence - veterinary ; Linkage (Genetics)/genetics ; Male ; Microsatellite Repeats - genetics ; Sus scrofa ; Swine ; Swine Diseases - genetics ; Swine Diseases - microbiology ; Swine Diseases/genetics/microbiology</subject><ispartof>Cytogenetic and Genome Research, 2003-01, Vol.102 (1-4), p.157-162</ispartof><rights>2003 S. Karger AG, Basel</rights><rights>Copyright 2003 S. Karger AG, Basel</rights><rights>Copyright (c) 2003 S. Karger AG, Basel</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c484t-9778da59b7fb5dc482dd16f5065aaf49df3c25357c1d700b097150c5f421cb1c3</citedby><cites>FETCH-LOGICAL-c484t-9778da59b7fb5dc482dd16f5065aaf49df3c25357c1d700b097150c5f421cb1c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,315,782,786,887,2433,27933,27934</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/14970696$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-84553$$DView record from Swedish Publication Index$$Hfree_for_read</backlink></links><search><creatorcontrib>Jørgensen, C.B.</creatorcontrib><creatorcontrib>Cirera, S.</creatorcontrib><creatorcontrib>Anderson, S.I.</creatorcontrib><creatorcontrib>Archibald, A.L.</creatorcontrib><creatorcontrib>Raudsepp, T.</creatorcontrib><creatorcontrib>Chowdhary, B.</creatorcontrib><creatorcontrib>Edfors-Lilja, I.</creatorcontrib><creatorcontrib>Andersson, L.</creatorcontrib><creatorcontrib>Fredholm, M.</creatorcontrib><title>Linkage and comparative mapping of the locus controlling susceptibility towards E. coli F4ab/ac diarrhoea in pigs</title><title>Cytogenetic and Genome Research</title><addtitle>Cytogenet Genome Res</addtitle><description>In 1995, Edfors-Lilja and coworkers mapped the locus for the E. coli K88ab (F4ab) and K88ac (F4ac) intestinal receptor to pig chromosome 13 (SSC13). Using the same family material we have refined the map position to a region between the microsatellite markers Sw207 and Sw225. Primers from these markers were used to screen a pig BAC library and the positive clones were used for fluorescent in situ hybridization (FISH) analysis. The results of the FISH analysis helped to propose a candidate gene region in the SSC13q41→q44 interval. Shotgun sequencing of the FISH-mapped BAC clones revealed that the candidate region contains an evolutionary breakpoint between human and pig. In order to further characterise the rearrangements between SSC13 and human chromosome 3 (HSA3), detailed gene mapping of SSC13 was carried out. Based on this mapping data we have constructed a detailed comparative map between SSC13 and HSA3. Two candidate regions on human chromosome 3 have been identified that are likely to harbour the human homologue of the gene responsible for susceptibility towards E. coli F4ab/ac diarrhoea in pigs. </description><subject>Animals</subject><subject>Animals, Domestic</subject><subject>Animals, Wild</subject><subject>Antigens, Bacterial - immunology</subject><subject>Chromosome Mapping - methods</subject><subject>Chromosome Mapping - veterinary</subject><subject>Chromosome Mapping/methods/veterinary</subject><subject>Comparative Study</subject><subject>Crosses, Genetic</subject><subject>Cytogenetic Analysis - methods</subject><subject>Cytogenetic Analysis - veterinary</subject><subject>Cytogenetic Analysis/methods/veterinary</subject><subject>Diarrhea - genetics</subject><subject>Diarrhea - microbiology</subject><subject>Diarrhea - veterinary</subject><subject>Diarrhea/genetics/microbiology/veterinary</subject><subject>Escherichia coli</subject><subject>Escherichia coli - immunology</subject><subject>Escherichia coli Infections - genetics</subject><subject>Escherichia coli Infections - veterinary</subject><subject>Escherichia coli Infections/genetics/veterinary</subject><subject>Escherichia coli Proteins - immunology</subject><subject>Female</subject><subject>Fimbriae Proteins - immunology</subject><subject>Genetic Linkage - genetics</subject><subject>Genetic Predisposition to Disease</subject><subject>Genotype</subject><subject>Humans</subject><subject>In Situ Hybridization, Fluorescence - methods</subject><subject>In Situ Hybridization, Fluorescence - veterinary</subject><subject>Linkage (Genetics)/genetics</subject><subject>Male</subject><subject>Microsatellite Repeats - genetics</subject><subject>Sus scrofa</subject><subject>Swine</subject><subject>Swine Diseases - genetics</subject><subject>Swine Diseases - microbiology</subject><subject>Swine Diseases/genetics/microbiology</subject><issn>1424-8581</issn><issn>1424-859X</issn><issn>1424-859X</issn><isbn>3805577346</isbn><isbn>9783805577342</isbn><isbn>3318010766</isbn><isbn>9783318010763</isbn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2003</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqFkt1rHCEUxe0XTbLtQ58LQfJQCGUTdXTUx7BN0sJCILSlb-KoMzGZGSc605D_vm522UAJrD4I9_44h3s9AHzC6ARjJk9RPpxxSl6Bg6LAAmHEy_I12MeU0Llg8s-b3BCIMc4LWr7dNgTeAwcp3SKEBWXle7CHqeSolOU-uF_6_k43DureQhO6QUc9-r8OdnoYfN_AUMPxxsE2mClloB9jaNtVI03JuGH0lW_9-AjH8KCjTfD8JFOthxdUV6faQOt1jDfBaeh7OPgmfQDvat0m93HzzsCvi_Ofi-_z5dXlj8XZcm6ooONcci6sZrLidcVsrhFrcVkzVDKtayptXRjCCsYNthyhCkmOGTKspgSbCptiBr6uddODG6ZKDdF3Oj6qoL365n-fqRAbNU0qr4QVmf6ypocY7ieXRtX5PF_b6t6FKaksTvPFO0GCCWelRLtBJBGWgu0EsSykJGJlffQfeBum2OclKkLy2EzwldrxGjIxpBRdvR0cI7XKkdrmKLOHG8Gp6px9JjfxeHa807FxcQssLq-fFNSQv2EGPr8IrT3-Acs_0dU</recordid><startdate>20030101</startdate><enddate>20030101</enddate><creator>Jørgensen, C.B.</creator><creator>Cirera, S.</creator><creator>Anderson, S.I.</creator><creator>Archibald, A.L.</creator><creator>Raudsepp, T.</creator><creator>Chowdhary, B.</creator><creator>Edfors-Lilja, I.</creator><creator>Andersson, L.</creator><creator>Fredholm, M.</creator><general>S. 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immunology</topic><topic>Chromosome Mapping - methods</topic><topic>Chromosome Mapping - veterinary</topic><topic>Chromosome Mapping/methods/veterinary</topic><topic>Comparative Study</topic><topic>Crosses, Genetic</topic><topic>Cytogenetic Analysis - methods</topic><topic>Cytogenetic Analysis - veterinary</topic><topic>Cytogenetic Analysis/methods/veterinary</topic><topic>Diarrhea - genetics</topic><topic>Diarrhea - microbiology</topic><topic>Diarrhea - veterinary</topic><topic>Diarrhea/genetics/microbiology/veterinary</topic><topic>Escherichia coli</topic><topic>Escherichia coli - immunology</topic><topic>Escherichia coli Infections - genetics</topic><topic>Escherichia coli Infections - veterinary</topic><topic>Escherichia coli Infections/genetics/veterinary</topic><topic>Escherichia coli Proteins - immunology</topic><topic>Female</topic><topic>Fimbriae Proteins - immunology</topic><topic>Genetic Linkage - genetics</topic><topic>Genetic Predisposition to Disease</topic><topic>Genotype</topic><topic>Humans</topic><topic>In Situ Hybridization, Fluorescence - 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Academic</collection><collection>SwePub</collection><collection>SwePub Articles</collection><collection>SWEPUB Uppsala universitet</collection><jtitle>Cytogenetic and Genome Research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Jørgensen, C.B.</au><au>Cirera, S.</au><au>Anderson, S.I.</au><au>Archibald, A.L.</au><au>Raudsepp, T.</au><au>Chowdhary, B.</au><au>Edfors-Lilja, I.</au><au>Andersson, L.</au><au>Fredholm, M.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Linkage and comparative mapping of the locus controlling susceptibility towards E. coli F4ab/ac diarrhoea in pigs</atitle><jtitle>Cytogenetic and Genome Research</jtitle><addtitle>Cytogenet Genome Res</addtitle><date>2003-01-01</date><risdate>2003</risdate><volume>102</volume><issue>1-4</issue><spage>157</spage><epage>162</epage><pages>157-162</pages><issn>1424-8581</issn><issn>1424-859X</issn><eissn>1424-859X</eissn><isbn>3805577346</isbn><isbn>9783805577342</isbn><eisbn>3318010766</eisbn><eisbn>9783318010763</eisbn><abstract>In 1995, Edfors-Lilja and coworkers mapped the locus for the E. coli K88ab (F4ab) and K88ac (F4ac) intestinal receptor to pig chromosome 13 (SSC13). Using the same family material we have refined the map position to a region between the microsatellite markers Sw207 and Sw225. Primers from these markers were used to screen a pig BAC library and the positive clones were used for fluorescent in situ hybridization (FISH) analysis. The results of the FISH analysis helped to propose a candidate gene region in the SSC13q41→q44 interval. Shotgun sequencing of the FISH-mapped BAC clones revealed that the candidate region contains an evolutionary breakpoint between human and pig. In order to further characterise the rearrangements between SSC13 and human chromosome 3 (HSA3), detailed gene mapping of SSC13 was carried out. Based on this mapping data we have constructed a detailed comparative map between SSC13 and HSA3. Two candidate regions on human chromosome 3 have been identified that are likely to harbour the human homologue of the gene responsible for susceptibility towards E. coli F4ab/ac diarrhoea in pigs. </abstract><cop>Basel, Switzerland</cop><pub>S. Karger AG</pub><pmid>14970696</pmid><doi>10.1159/000075742</doi><tpages>6</tpages></addata></record> |
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| ispartof | Cytogenetic and Genome Research, 2003-01, Vol.102 (1-4), p.157-162 |
| issn | 1424-8581 1424-859X 1424-859X |
| language | eng |
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| source | MEDLINE; Karger Journals; Alma/SFX Local Collection |
| subjects | Animals Animals, Domestic Animals, Wild Antigens, Bacterial - immunology Chromosome Mapping - methods Chromosome Mapping - veterinary Chromosome Mapping/methods/veterinary Comparative Study Crosses, Genetic Cytogenetic Analysis - methods Cytogenetic Analysis - veterinary Cytogenetic Analysis/methods/veterinary Diarrhea - genetics Diarrhea - microbiology Diarrhea - veterinary Diarrhea/genetics/microbiology/veterinary Escherichia coli Escherichia coli - immunology Escherichia coli Infections - genetics Escherichia coli Infections - veterinary Escherichia coli Infections/genetics/veterinary Escherichia coli Proteins - immunology Female Fimbriae Proteins - immunology Genetic Linkage - genetics Genetic Predisposition to Disease Genotype Humans In Situ Hybridization, Fluorescence - methods In Situ Hybridization, Fluorescence - veterinary Linkage (Genetics)/genetics Male Microsatellite Repeats - genetics Sus scrofa Swine Swine Diseases - genetics Swine Diseases - microbiology Swine Diseases/genetics/microbiology |
| title | Linkage and comparative mapping of the locus controlling susceptibility towards E. coli F4ab/ac diarrhoea in pigs |
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