enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes
A molecular-marker linkage map has been constructed for perennial ryegrass (Lolium perenne L.) using a one-way pseudo-testcross population based on the mating of a multiple heterozygous individual with a doubled haploid genotype. RFLP, AFLP, isoenzyme, and EST data from four collaborating laboratori...
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| Veröffentlicht in: | Genome 2002-04, Vol.45 (2), p.282-295 |
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| creator | Jones, E.S Mahoney, N.L Hayward, M.D Armstead, I.P Jones, J.G Humphreys, M.O King, I.P Kishida, T Yamada, T Balfourier, F |
| description | A molecular-marker linkage map has been constructed for perennial ryegrass (Lolium perenne L.) using a one-way pseudo-testcross population based on the mating of a multiple heterozygous individual with a doubled haploid genotype. RFLP, AFLP, isoenzyme, and EST data from four collaborating laboratories within the International Lolium Genome Initiative were combined to produce an integrated genetic map containing 240 loci covering 811 cM on seven linkage groups. The map contained 124 codominant markers, of which 109 were heterologous anchor RFLP probes from wheat, barley, oat, and rice, allowing comparative relationships between perennial ryegrass and other Poaceae species to be inferred. The genetic maps of perennial ryegrass and the Triticeae cereals are highly conserved in terms of synteny and colinearity. This observation was supported by the general agreement of the syntenic relationships between perennial ryegrass, oat, and rice and those between the Triticeae and these species. A lower level of synteny and colinearity was observed between perennial ryegrass and oat compared with the Triticeae, despite the closer taxonomic affinity between these species. It is proposed that the linkage groups of perennial ryegrass be numbered in accordance with these syntenic relationships, to correspond to the homoeologous groups of the Triticeae cereals. |
| doi_str_mv | 10.1139/g01-144 |
| format | Article |
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RFLP, AFLP, isoenzyme, and EST data from four collaborating laboratories within the International Lolium Genome Initiative were combined to produce an integrated genetic map containing 240 loci covering 811 cM on seven linkage groups. The map contained 124 codominant markers, of which 109 were heterologous anchor RFLP probes from wheat, barley, oat, and rice, allowing comparative relationships between perennial ryegrass and other Poaceae species to be inferred. The genetic maps of perennial ryegrass and the Triticeae cereals are highly conserved in terms of synteny and colinearity. This observation was supported by the general agreement of the syntenic relationships between perennial ryegrass, oat, and rice and those between the Triticeae and these species. A lower level of synteny and colinearity was observed between perennial ryegrass and oat compared with the Triticeae, despite the closer taxonomic affinity between these species. It is proposed that the linkage groups of perennial ryegrass be numbered in accordance with these syntenic relationships, to correspond to the homoeologous groups of the Triticeae cereals.</description><identifier>ISSN: 0831-2796</identifier><identifier>EISSN: 1480-3321</identifier><identifier>DOI: 10.1139/g01-144</identifier><identifier>PMID: 11962626</identifier><identifier>CODEN: GENOE3</identifier><language>eng</language><publisher>Ottawa, Canada: NRC Research Press</publisher><subject>Amplified fragment length polymorphism ; Cereals ; Chromosome Mapping ; Crosses, Genetic ; Data processing ; DNA probes ; DNA, Plant - genetics ; DNA, Plant - isolation & purification ; Expressed Sequence Tags ; gene location ; Gene mapping ; gene tagging ; Genetic Linkage ; Genetic Markers ; Genetics ; Genome, Plant ; Genomes ; genomics ; Genotype ; Genotypes ; Haploidy ; heterozygosity ; Heterozygote ; Hordeum vulgare ; Isoenzymes ; Isoenzymes - genetics ; isozymes ; Life Sciences ; linkage (genetics) ; loci ; Lolium ; Lolium - enzymology ; Lolium - genetics ; Lolium perenne ; Mating ; Oryza sativa ; Poaceae ; Poaceae - genetics ; Polymorphism, Restriction Fragment Length ; Repetitive Sequences, Nucleic Acid ; restriction fragment length polymorphism ; Rice ; Species Specificity ; Synteny ; Triticeae ; Triticum aestivum</subject><ispartof>Genome, 2002-04, Vol.45 (2), p.282-295</ispartof><rights>Copyright National Research Council of Canada Apr 2002</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c568t-f4bdf0c0c7c784bfc62228392810ea7a2f234bf5835431452f4bbd5e53c53a4e3</citedby><cites>FETCH-LOGICAL-c568t-f4bdf0c0c7c784bfc62228392810ea7a2f234bf5835431452f4bbd5e53c53a4e3</cites><orcidid>0000-0001-8927-5040</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://cdnsciencepub.com/doi/pdf/10.1139/g01-144$$EPDF$$P50$$Gnrcresearch$$H</linktopdf><linktohtml>$$Uhttps://cdnsciencepub.com/doi/full/10.1139/g01-144$$EHTML$$P50$$Gnrcresearch$$H</linktohtml><link.rule.ids>230,314,776,780,881,2919,27901,27902,64401,64979</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/11962626$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.science/hal-00964270$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Jones, E.S</creatorcontrib><creatorcontrib>Mahoney, N.L</creatorcontrib><creatorcontrib>Hayward, M.D</creatorcontrib><creatorcontrib>Armstead, I.P</creatorcontrib><creatorcontrib>Jones, J.G</creatorcontrib><creatorcontrib>Humphreys, M.O</creatorcontrib><creatorcontrib>King, I.P</creatorcontrib><creatorcontrib>Kishida, T</creatorcontrib><creatorcontrib>Yamada, T</creatorcontrib><creatorcontrib>Balfourier, F</creatorcontrib><title>enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes</title><title>Genome</title><addtitle>Génome</addtitle><description>A molecular-marker linkage map has been constructed for perennial ryegrass (Lolium perenne L.) using a one-way pseudo-testcross population based on the mating of a multiple heterozygous individual with a doubled haploid genotype. RFLP, AFLP, isoenzyme, and EST data from four collaborating laboratories within the International Lolium Genome Initiative were combined to produce an integrated genetic map containing 240 loci covering 811 cM on seven linkage groups. The map contained 124 codominant markers, of which 109 were heterologous anchor RFLP probes from wheat, barley, oat, and rice, allowing comparative relationships between perennial ryegrass and other Poaceae species to be inferred. The genetic maps of perennial ryegrass and the Triticeae cereals are highly conserved in terms of synteny and colinearity. This observation was supported by the general agreement of the syntenic relationships between perennial ryegrass, oat, and rice and those between the Triticeae and these species. A lower level of synteny and colinearity was observed between perennial ryegrass and oat compared with the Triticeae, despite the closer taxonomic affinity between these species. It is proposed that the linkage groups of perennial ryegrass be numbered in accordance with these syntenic relationships, to correspond to the homoeologous groups of the Triticeae cereals.</description><subject>Amplified fragment length polymorphism</subject><subject>Cereals</subject><subject>Chromosome Mapping</subject><subject>Crosses, Genetic</subject><subject>Data processing</subject><subject>DNA probes</subject><subject>DNA, Plant - genetics</subject><subject>DNA, Plant - isolation & purification</subject><subject>Expressed Sequence Tags</subject><subject>gene location</subject><subject>Gene mapping</subject><subject>gene tagging</subject><subject>Genetic Linkage</subject><subject>Genetic Markers</subject><subject>Genetics</subject><subject>Genome, Plant</subject><subject>Genomes</subject><subject>genomics</subject><subject>Genotype</subject><subject>Genotypes</subject><subject>Haploidy</subject><subject>heterozygosity</subject><subject>Heterozygote</subject><subject>Hordeum vulgare</subject><subject>Isoenzymes</subject><subject>Isoenzymes - genetics</subject><subject>isozymes</subject><subject>Life Sciences</subject><subject>linkage (genetics)</subject><subject>loci</subject><subject>Lolium</subject><subject>Lolium - enzymology</subject><subject>Lolium - genetics</subject><subject>Lolium perenne</subject><subject>Mating</subject><subject>Oryza sativa</subject><subject>Poaceae</subject><subject>Poaceae - genetics</subject><subject>Polymorphism, Restriction Fragment Length</subject><subject>Repetitive Sequences, Nucleic Acid</subject><subject>restriction fragment length polymorphism</subject><subject>Rice</subject><subject>Species Specificity</subject><subject>Synteny</subject><subject>Triticeae</subject><subject>Triticum 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molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes</title><author>Jones, E.S ; Mahoney, N.L ; Hayward, M.D ; Armstead, I.P ; Jones, J.G ; Humphreys, M.O ; King, I.P ; Kishida, T ; Yamada, T ; Balfourier, F</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c568t-f4bdf0c0c7c784bfc62228392810ea7a2f234bf5835431452f4bbd5e53c53a4e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Amplified fragment length polymorphism</topic><topic>Cereals</topic><topic>Chromosome Mapping</topic><topic>Crosses, Genetic</topic><topic>Data processing</topic><topic>DNA probes</topic><topic>DNA, Plant - genetics</topic><topic>DNA, Plant - isolation & purification</topic><topic>Expressed Sequence Tags</topic><topic>gene location</topic><topic>Gene mapping</topic><topic>gene tagging</topic><topic>Genetic Linkage</topic><topic>Genetic Markers</topic><topic>Genetics</topic><topic>Genome, Plant</topic><topic>Genomes</topic><topic>genomics</topic><topic>Genotype</topic><topic>Genotypes</topic><topic>Haploidy</topic><topic>heterozygosity</topic><topic>Heterozygote</topic><topic>Hordeum vulgare</topic><topic>Isoenzymes</topic><topic>Isoenzymes - genetics</topic><topic>isozymes</topic><topic>Life Sciences</topic><topic>linkage (genetics)</topic><topic>loci</topic><topic>Lolium</topic><topic>Lolium - enzymology</topic><topic>Lolium - genetics</topic><topic>Lolium perenne</topic><topic>Mating</topic><topic>Oryza sativa</topic><topic>Poaceae</topic><topic>Poaceae - genetics</topic><topic>Polymorphism, Restriction Fragment Length</topic><topic>Repetitive Sequences, Nucleic Acid</topic><topic>restriction fragment length polymorphism</topic><topic>Rice</topic><topic>Species Specificity</topic><topic>Synteny</topic><topic>Triticeae</topic><topic>Triticum aestivum</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Jones, E.S</creatorcontrib><creatorcontrib>Mahoney, N.L</creatorcontrib><creatorcontrib>Hayward, M.D</creatorcontrib><creatorcontrib>Armstead, I.P</creatorcontrib><creatorcontrib>Jones, J.G</creatorcontrib><creatorcontrib>Humphreys, M.O</creatorcontrib><creatorcontrib>King, I.P</creatorcontrib><creatorcontrib>Kishida, T</creatorcontrib><creatorcontrib>Yamada, T</creatorcontrib><creatorcontrib>Balfourier, F</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids 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L.) using a one-way pseudo-testcross population based on the mating of a multiple heterozygous individual with a doubled haploid genotype. RFLP, AFLP, isoenzyme, and EST data from four collaborating laboratories within the International Lolium Genome Initiative were combined to produce an integrated genetic map containing 240 loci covering 811 cM on seven linkage groups. The map contained 124 codominant markers, of which 109 were heterologous anchor RFLP probes from wheat, barley, oat, and rice, allowing comparative relationships between perennial ryegrass and other Poaceae species to be inferred. The genetic maps of perennial ryegrass and the Triticeae cereals are highly conserved in terms of synteny and colinearity. This observation was supported by the general agreement of the syntenic relationships between perennial ryegrass, oat, and rice and those between the Triticeae and these species. A lower level of synteny and colinearity was observed between perennial ryegrass and oat compared with the Triticeae, despite the closer taxonomic affinity between these species. It is proposed that the linkage groups of perennial ryegrass be numbered in accordance with these syntenic relationships, to correspond to the homoeologous groups of the Triticeae cereals.</abstract><cop>Ottawa, Canada</cop><pub>NRC Research Press</pub><pmid>11962626</pmid><doi>10.1139/g01-144</doi><tpages>14</tpages><orcidid>https://orcid.org/0000-0001-8927-5040</orcidid><oa>free_for_read</oa></addata></record> |
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| language | eng |
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| source | MEDLINE; Canadian Science Publishing |
| subjects | Amplified fragment length polymorphism Cereals Chromosome Mapping Crosses, Genetic Data processing DNA probes DNA, Plant - genetics DNA, Plant - isolation & purification Expressed Sequence Tags gene location Gene mapping gene tagging Genetic Linkage Genetic Markers Genetics Genome, Plant Genomes genomics Genotype Genotypes Haploidy heterozygosity Heterozygote Hordeum vulgare Isoenzymes Isoenzymes - genetics isozymes Life Sciences linkage (genetics) loci Lolium Lolium - enzymology Lolium - genetics Lolium perenne Mating Oryza sativa Poaceae Poaceae - genetics Polymorphism, Restriction Fragment Length Repetitive Sequences, Nucleic Acid restriction fragment length polymorphism Rice Species Specificity Synteny Triticeae Triticum aestivum |
| title | enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes |
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