The phylogeny of the cactophilic yeasts based on the 18S ribosomal RNA gene sequences: The proposals of Phaffomyces antillensis and Starmera caribaea, new combinations
The complete sequences of the 18S rRNA gene fragments of the type strains of the cactophilic yeast species, Pichia antillensis, Pichia caribaea, Phaffomyces opuntiae, Phaffomyces thermotolerans, Starmera amethionina var. amethionina, and Starmera amethionina var. pachycereana were determined and com...
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| Veröffentlicht in: | Bioscience, biotechnology, and biochemistry biotechnology, and biochemistry, 1999-05, Vol.63 (5), p.827-832 |
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| container_title | Bioscience, biotechnology, and biochemistry |
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| creator | Yamada, Y. (Osaka Univ., Suita (Japan)) Kawasaki, H Nagatsuka, Y Mikata, K Seki, T |
| description | The complete sequences of the 18S rRNA gene fragments of the type strains of the cactophilic yeast species, Pichia antillensis, Pichia caribaea, Phaffomyces opuntiae, Phaffomyces thermotolerans, Starmera amethionina var. amethionina, and Starmera amethionina var. pachycereana were determined and compared. The type strain of Phaffomyces opuntiae had two kinds of the 18S rRNA gene sequences of which base differences were counted to be 15 and of which the percent similarity was calculated to be 99.1. The type strains of P. antillensis, P. caribaea, and Starmera amethionina var. pachycereana had the Q-7 system. The phylogenetic analyses showed that the genera Phaffomyces and Starmera were monophyletic and distant from each other and from the other species examined of the ascogenous teleomorphic genera, and that P. antillensis and P. caribaea were included within the clusters of the genera Phaffomyces and Starmera, respectively. The two Pichia species were transferred to the genera Phaffomyces and Starmera as the new combinations, Phaffomyces antillensis and Starmera caribaea. The new family Phaffomycetaceae was proposed as the type genus Phaffomyces |
| doi_str_mv | 10.1271/bbb.63.827 |
| format | Article |
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(Osaka Univ., Suita (Japan)) ; Kawasaki, H ; Nagatsuka, Y ; Mikata, K ; Seki, T</creator><creatorcontrib>Yamada, Y. (Osaka Univ., Suita (Japan)) ; Kawasaki, H ; Nagatsuka, Y ; Mikata, K ; Seki, T</creatorcontrib><description>The complete sequences of the 18S rRNA gene fragments of the type strains of the cactophilic yeast species, Pichia antillensis, Pichia caribaea, Phaffomyces opuntiae, Phaffomyces thermotolerans, Starmera amethionina var. amethionina, and Starmera amethionina var. pachycereana were determined and compared. The type strain of Phaffomyces opuntiae had two kinds of the 18S rRNA gene sequences of which base differences were counted to be 15 and of which the percent similarity was calculated to be 99.1. The type strains of P. antillensis, P. caribaea, and Starmera amethionina var. pachycereana had the Q-7 system. The phylogenetic analyses showed that the genera Phaffomyces and Starmera were monophyletic and distant from each other and from the other species examined of the ascogenous teleomorphic genera, and that P. antillensis and P. caribaea were included within the clusters of the genera Phaffomyces and Starmera, respectively. The two Pichia species were transferred to the genera Phaffomyces and Starmera as the new combinations, Phaffomyces antillensis and Starmera caribaea. The new family Phaffomycetaceae was proposed as the type genus Phaffomyces</description><identifier>ISSN: 0916-8451</identifier><identifier>EISSN: 1347-6947</identifier><identifier>DOI: 10.1271/bbb.63.827</identifier><identifier>PMID: 10380625</identifier><language>eng</language><publisher>Tokyo: Japan Society for Bioscience, Biotechnology, and Agrochemistry</publisher><subject>ARN RIBOSOMAL ; ARN RIBOSOMIAL ; Base Sequence ; Biological and medical sciences ; CLASIFICACION ; CLASSIFICATION ; DISTANCE GENETIQUE ; DISTANCIA GENETICA ; DNA Primers ; ENDOMYCETALES ; FILOGENIA ; Fundamental and applied biological sciences. Psychology ; GENETIC DISTANCE ; LEVADURA ; LEVURE ; Microbiology ; Mycology ; NUCLEOTIDE SEQUENCE ; Phaffomyces ; Phaffomyces antillensis ; Phaffomyces antillensis comb. nov ; Phaffomyces opuntiae ; Phaffomyces thermotolerans ; Phaffomycetaceae fam. nov ; PHYLOGENIE ; PHYLOGENY ; PICHIA ; Pichia antillensis ; Pichia caribaea ; RIBOSOMAL RNA ; RNA, Ribosomal, 18S - genetics ; rRNA 18S ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; Starmera ; Starmera amethionina ; Starmera caribaea ; Starmera caribaea comb. nov ; Systematics ; YEASTS ; Yeasts - genetics</subject><ispartof>Bioscience, biotechnology, and biochemistry, 1999-05, Vol.63 (5), p.827-832</ispartof><rights>1999 by Japan Society for Bioscience, Biotechnology, and Agrochemistry 1999</rights><rights>1999 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c537t-773c0cd17f41e275a3e1e8829a38c2c3b0e702907fcef286444236123b1472203</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,27928,27929</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=1948666$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10380625$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Yamada, Y. (Osaka Univ., Suita (Japan))</creatorcontrib><creatorcontrib>Kawasaki, H</creatorcontrib><creatorcontrib>Nagatsuka, Y</creatorcontrib><creatorcontrib>Mikata, K</creatorcontrib><creatorcontrib>Seki, T</creatorcontrib><title>The phylogeny of the cactophilic yeasts based on the 18S ribosomal RNA gene sequences: The proposals of Phaffomyces antillensis and Starmera caribaea, new combinations</title><title>Bioscience, biotechnology, and biochemistry</title><addtitle>Biosci Biotechnol Biochem</addtitle><description>The complete sequences of the 18S rRNA gene fragments of the type strains of the cactophilic yeast species, Pichia antillensis, Pichia caribaea, Phaffomyces opuntiae, Phaffomyces thermotolerans, Starmera amethionina var. amethionina, and Starmera amethionina var. pachycereana were determined and compared. The type strain of Phaffomyces opuntiae had two kinds of the 18S rRNA gene sequences of which base differences were counted to be 15 and of which the percent similarity was calculated to be 99.1. The type strains of P. antillensis, P. caribaea, and Starmera amethionina var. pachycereana had the Q-7 system. The phylogenetic analyses showed that the genera Phaffomyces and Starmera were monophyletic and distant from each other and from the other species examined of the ascogenous teleomorphic genera, and that P. antillensis and P. caribaea were included within the clusters of the genera Phaffomyces and Starmera, respectively. The two Pichia species were transferred to the genera Phaffomyces and Starmera as the new combinations, Phaffomyces antillensis and Starmera caribaea. The new family Phaffomycetaceae was proposed as the type genus Phaffomyces</description><subject>ARN RIBOSOMAL</subject><subject>ARN RIBOSOMIAL</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>CLASIFICACION</subject><subject>CLASSIFICATION</subject><subject>DISTANCE GENETIQUE</subject><subject>DISTANCIA GENETICA</subject><subject>DNA Primers</subject><subject>ENDOMYCETALES</subject><subject>FILOGENIA</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>GENETIC DISTANCE</subject><subject>LEVADURA</subject><subject>LEVURE</subject><subject>Microbiology</subject><subject>Mycology</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>Phaffomyces</subject><subject>Phaffomyces antillensis</subject><subject>Phaffomyces antillensis comb. nov</subject><subject>Phaffomyces opuntiae</subject><subject>Phaffomyces thermotolerans</subject><subject>Phaffomycetaceae fam. nov</subject><subject>PHYLOGENIE</subject><subject>PHYLOGENY</subject><subject>PICHIA</subject><subject>Pichia antillensis</subject><subject>Pichia caribaea</subject><subject>RIBOSOMAL RNA</subject><subject>RNA, Ribosomal, 18S - genetics</subject><subject>rRNA 18S</subject><subject>SECUENCIA NUCLEOTIDICA</subject><subject>SEQUENCE NUCLEOTIDIQUE</subject><subject>Starmera</subject><subject>Starmera amethionina</subject><subject>Starmera caribaea</subject><subject>Starmera caribaea comb. nov</subject><subject>Systematics</subject><subject>YEASTS</subject><subject>Yeasts - genetics</subject><issn>0916-8451</issn><issn>1347-6947</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1999</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhiMEokvhwh3kA-KAyOKv2A63qmr5UAUVLedo4oy7Rom9tbOq9hfxN_F2F8EBiZOtmed9Z0ZvVT1ndMm4Zu_6vl8qsTRcP6gWTEhdq1bqh9WCtkzVRjbsqHqS8w9KS6Fhj6sjRoWhijeL6uf1Csl6tR3jDYYtiY7MpWDBznG98qO3ZIuQ50x6yDiQGO77zFyR5PuY4wQj-fblhBQ1koy3GwwW83tyb5viOmYY8872cgXOxWlbugTC7McRQ_a7_0CuZkgTJihziysgvCUB74iNU-8DzD6G_LR65IoTPju8x9X387Pr04_1xdcPn05PLmrbCD3XWgtL7cC0kwy5bkAgQ2N4C8JYbkVPUVPeUu0sOm6UlJILxbjomdScU3Fcvd77luXLMXnuJp8tjiMEjJvcqdZIRVv1X5BpKYxQvIBv9qBNMeeErlsnP0Hadox2u_y6kl-nRFfyK_DLg-umn3D4C90HVoBXBwCyhdElCNbnP1wrjVK77Zo95oOLaYK7mMahm6HknH5rxD_nv9jrHMQOblLBPl-ytm0pVUYr8QtUzr7k</recordid><startdate>19990501</startdate><enddate>19990501</enddate><creator>Yamada, Y. 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(Osaka Univ., Suita (Japan)) ; Kawasaki, H ; Nagatsuka, Y ; Mikata, K ; Seki, T</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c537t-773c0cd17f41e275a3e1e8829a38c2c3b0e702907fcef286444236123b1472203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1999</creationdate><topic>ARN RIBOSOMAL</topic><topic>ARN RIBOSOMIAL</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>CLASIFICACION</topic><topic>CLASSIFICATION</topic><topic>DISTANCE GENETIQUE</topic><topic>DISTANCIA GENETICA</topic><topic>DNA Primers</topic><topic>ENDOMYCETALES</topic><topic>FILOGENIA</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>GENETIC DISTANCE</topic><topic>LEVADURA</topic><topic>LEVURE</topic><topic>Microbiology</topic><topic>Mycology</topic><topic>NUCLEOTIDE SEQUENCE</topic><topic>Phaffomyces</topic><topic>Phaffomyces antillensis</topic><topic>Phaffomyces antillensis comb. nov</topic><topic>Phaffomyces opuntiae</topic><topic>Phaffomyces thermotolerans</topic><topic>Phaffomycetaceae fam. nov</topic><topic>PHYLOGENIE</topic><topic>PHYLOGENY</topic><topic>PICHIA</topic><topic>Pichia antillensis</topic><topic>Pichia caribaea</topic><topic>RIBOSOMAL RNA</topic><topic>RNA, Ribosomal, 18S - genetics</topic><topic>rRNA 18S</topic><topic>SECUENCIA NUCLEOTIDICA</topic><topic>SEQUENCE NUCLEOTIDIQUE</topic><topic>Starmera</topic><topic>Starmera amethionina</topic><topic>Starmera caribaea</topic><topic>Starmera caribaea comb. nov</topic><topic>Systematics</topic><topic>YEASTS</topic><topic>Yeasts - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Yamada, Y. (Osaka Univ., Suita (Japan))</creatorcontrib><creatorcontrib>Kawasaki, H</creatorcontrib><creatorcontrib>Nagatsuka, Y</creatorcontrib><creatorcontrib>Mikata, K</creatorcontrib><creatorcontrib>Seki, T</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Bioscience, biotechnology, and biochemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Yamada, Y. (Osaka Univ., Suita (Japan))</au><au>Kawasaki, H</au><au>Nagatsuka, Y</au><au>Mikata, K</au><au>Seki, T</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The phylogeny of the cactophilic yeasts based on the 18S ribosomal RNA gene sequences: The proposals of Phaffomyces antillensis and Starmera caribaea, new combinations</atitle><jtitle>Bioscience, biotechnology, and biochemistry</jtitle><addtitle>Biosci Biotechnol Biochem</addtitle><date>1999-05-01</date><risdate>1999</risdate><volume>63</volume><issue>5</issue><spage>827</spage><epage>832</epage><pages>827-832</pages><issn>0916-8451</issn><eissn>1347-6947</eissn><abstract>The complete sequences of the 18S rRNA gene fragments of the type strains of the cactophilic yeast species, Pichia antillensis, Pichia caribaea, Phaffomyces opuntiae, Phaffomyces thermotolerans, Starmera amethionina var. amethionina, and Starmera amethionina var. pachycereana were determined and compared. The type strain of Phaffomyces opuntiae had two kinds of the 18S rRNA gene sequences of which base differences were counted to be 15 and of which the percent similarity was calculated to be 99.1. The type strains of P. antillensis, P. caribaea, and Starmera amethionina var. pachycereana had the Q-7 system. The phylogenetic analyses showed that the genera Phaffomyces and Starmera were monophyletic and distant from each other and from the other species examined of the ascogenous teleomorphic genera, and that P. antillensis and P. caribaea were included within the clusters of the genera Phaffomyces and Starmera, respectively. The two Pichia species were transferred to the genera Phaffomyces and Starmera as the new combinations, Phaffomyces antillensis and Starmera caribaea. The new family Phaffomycetaceae was proposed as the type genus Phaffomyces</abstract><cop>Tokyo</cop><pub>Japan Society for Bioscience, Biotechnology, and Agrochemistry</pub><pmid>10380625</pmid><doi>10.1271/bbb.63.827</doi><tpages>6</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0916-8451 |
| ispartof | Bioscience, biotechnology, and biochemistry, 1999-05, Vol.63 (5), p.827-832 |
| issn | 0916-8451 1347-6947 |
| language | eng |
| recordid | cdi_pubmed_primary_10380625 |
| source | J-STAGE Free; MEDLINE; Oxford University Press Journals All Titles (1996-Current); Open Access Titles of Japan; EZB-FREE-00999 freely available EZB journals; Free Full-Text Journals in Chemistry |
| subjects | ARN RIBOSOMAL ARN RIBOSOMIAL Base Sequence Biological and medical sciences CLASIFICACION CLASSIFICATION DISTANCE GENETIQUE DISTANCIA GENETICA DNA Primers ENDOMYCETALES FILOGENIA Fundamental and applied biological sciences. Psychology GENETIC DISTANCE LEVADURA LEVURE Microbiology Mycology NUCLEOTIDE SEQUENCE Phaffomyces Phaffomyces antillensis Phaffomyces antillensis comb. nov Phaffomyces opuntiae Phaffomyces thermotolerans Phaffomycetaceae fam. nov PHYLOGENIE PHYLOGENY PICHIA Pichia antillensis Pichia caribaea RIBOSOMAL RNA RNA, Ribosomal, 18S - genetics rRNA 18S SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE Starmera Starmera amethionina Starmera caribaea Starmera caribaea comb. nov Systematics YEASTS Yeasts - genetics |
| title | The phylogeny of the cactophilic yeasts based on the 18S ribosomal RNA gene sequences: The proposals of Phaffomyces antillensis and Starmera caribaea, new combinations |
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