Molecular Characterization of a Nonfibrillar Collagen from the Marine Sponge Chondrosia reniformis Nardo 1847 and Positive Effects of Soluble Silicates on Its Expression
We report here the complete cDNA sequence of a nonfibrillar collagen (COLch) isolated from the marine sponge Chondrosia reniformis, Nardo 1847 using a PCR approach. COLch cDNA consists of 2,563 nucleotides and includes a 5′ untranslated region (UTR) of 136 nucleotides, a 3′ UTR of 198 nucleotides, a...
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description | We report here the complete cDNA sequence of a nonfibrillar collagen (COLch) isolated from the marine sponge Chondrosia reniformis, Nardo 1847 using a PCR approach. COLch cDNA consists of 2,563 nucleotides and includes a 5′ untranslated region (UTR) of 136 nucleotides, a 3′ UTR of 198 nucleotides, and an open reading frame encoding for a protein of 743 amino acids with an estimated M r of 72.12 kDa. The phylogenetic analysis on the deduced amino acid sequence of C-terminal end shows that the isolated sequence belongs to the short-chain spongin-like collagen subfamily, a nonfibrillar group of invertebrate collagens similar to type IV collagen. In situ hybridization analysis shows higher expression of COLch mRNA in the cortical part than in the inner part of the sponge. Therefore, COLch seems to be involved in the formation of C. reniformis ectosome, where it could play a key role in the attachment to the rocky substrata and in the selective sediment incorporation typical of these organisms. qPCR analysis of COLch mRNA level, performed on C. reniformis tissue culture models (fragmorphs), also demonstrates that this matrix protein is directly involved in sponge healing processes and that soluble silicates positively regulate its expression. These findings confirm the essential role of silicon in the fibrogenesis process also in lower invertebrates, and they should give a tool for a sustainable production of marine collagen in sponge mariculture. |
doi_str_mv | 10.1007/s10126-011-9415-2 |
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COLch cDNA consists of 2,563 nucleotides and includes a 5′ untranslated region (UTR) of 136 nucleotides, a 3′ UTR of 198 nucleotides, and an open reading frame encoding for a protein of 743 amino acids with an estimated M r of 72.12 kDa. The phylogenetic analysis on the deduced amino acid sequence of C-terminal end shows that the isolated sequence belongs to the short-chain spongin-like collagen subfamily, a nonfibrillar group of invertebrate collagens similar to type IV collagen. In situ hybridization analysis shows higher expression of COLch mRNA in the cortical part than in the inner part of the sponge. Therefore, COLch seems to be involved in the formation of C. reniformis ectosome, where it could play a key role in the attachment to the rocky substrata and in the selective sediment incorporation typical of these organisms. qPCR analysis of COLch mRNA level, performed on C. reniformis tissue culture models (fragmorphs), also demonstrates that this matrix protein is directly involved in sponge healing processes and that soluble silicates positively regulate its expression. These findings confirm the essential role of silicon in the fibrogenesis process also in lower invertebrates, and they should give a tool for a sustainable production of marine collagen in sponge mariculture.</description><identifier>ISSN: 1436-2228</identifier><identifier>EISSN: 1436-2236</identifier><identifier>DOI: 10.1007/s10126-011-9415-2</identifier><identifier>PMID: 22072047</identifier><language>eng</language><publisher>New York: Springer-Verlag</publisher><subject>amino acid sequences ; Amino acids ; Animals ; Biomedical and Life Sciences ; Biotechnology ; Chondrosia reniformis ; Collagen ; complementary DNA ; Composite materials ; Deoxyribonucleic acid ; DNA ; Engineering ; Evolution ; Extracellular matrix ; Freshwater & Marine Ecology ; Gene expression ; in situ hybridization ; Invertebrates ; Life Sciences ; Marine ; Marine aquaculture ; Marine biology ; messenger RNA ; Microbiology ; Non-Fibrillar Collagens - biosynthesis ; Non-Fibrillar Collagens - chemistry ; Non-Fibrillar Collagens - genetics ; Oceans and Seas ; open reading frames ; Original Article ; phylogeny ; Porifera - classification ; Porifera - drug effects ; Porifera - metabolism ; quantitative polymerase chain reaction ; Seawater ; Silica ; Silicates ; Silicates - chemistry ; Silicates - pharmacology ; silicon ; Solubility ; Species Specificity ; Studies ; Sustainable development ; Sustainable production ; tissue culture ; Zoology</subject><ispartof>Marine biotechnology (New York, N.Y.), 2012-06, Vol.14 (3), p.281-293</ispartof><rights>Springer Science+Business Media, LLC 2011</rights><rights>Springer Science+Business Media, LLC 2012</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c427t-1b260afd9af48f5d6317bfa1388521bf1955c0ea0e6f707baa25d8eeb8672c843</citedby><cites>FETCH-LOGICAL-c427t-1b260afd9af48f5d6317bfa1388521bf1955c0ea0e6f707baa25d8eeb8672c843</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10126-011-9415-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10126-011-9415-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22072047$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Pozzolini, Marina</creatorcontrib><creatorcontrib>Bruzzone, Federica</creatorcontrib><creatorcontrib>Berilli, Valentina</creatorcontrib><creatorcontrib>Mussino, Francesca</creatorcontrib><creatorcontrib>Cerrano, Carlo</creatorcontrib><creatorcontrib>Benatti, Umberto</creatorcontrib><creatorcontrib>Giovine, Marco</creatorcontrib><title>Molecular Characterization of a Nonfibrillar Collagen from the Marine Sponge Chondrosia reniformis Nardo 1847 and Positive Effects of Soluble Silicates on Its Expression</title><title>Marine biotechnology (New York, N.Y.)</title><addtitle>Mar Biotechnol</addtitle><addtitle>Mar Biotechnol (NY)</addtitle><description>We report here the complete cDNA sequence of a nonfibrillar collagen (COLch) isolated from the marine sponge Chondrosia reniformis, Nardo 1847 using a PCR approach. COLch cDNA consists of 2,563 nucleotides and includes a 5′ untranslated region (UTR) of 136 nucleotides, a 3′ UTR of 198 nucleotides, and an open reading frame encoding for a protein of 743 amino acids with an estimated M r of 72.12 kDa. The phylogenetic analysis on the deduced amino acid sequence of C-terminal end shows that the isolated sequence belongs to the short-chain spongin-like collagen subfamily, a nonfibrillar group of invertebrate collagens similar to type IV collagen. In situ hybridization analysis shows higher expression of COLch mRNA in the cortical part than in the inner part of the sponge. Therefore, COLch seems to be involved in the formation of C. reniformis ectosome, where it could play a key role in the attachment to the rocky substrata and in the selective sediment incorporation typical of these organisms. qPCR analysis of COLch mRNA level, performed on C. reniformis tissue culture models (fragmorphs), also demonstrates that this matrix protein is directly involved in sponge healing processes and that soluble silicates positively regulate its expression. These findings confirm the essential role of silicon in the fibrogenesis process also in lower invertebrates, and they should give a tool for a sustainable production of marine collagen in sponge mariculture.</description><subject>amino acid sequences</subject><subject>Amino acids</subject><subject>Animals</subject><subject>Biomedical and Life Sciences</subject><subject>Biotechnology</subject><subject>Chondrosia reniformis</subject><subject>Collagen</subject><subject>complementary DNA</subject><subject>Composite materials</subject><subject>Deoxyribonucleic acid</subject><subject>DNA</subject><subject>Engineering</subject><subject>Evolution</subject><subject>Extracellular matrix</subject><subject>Freshwater & Marine Ecology</subject><subject>Gene expression</subject><subject>in situ hybridization</subject><subject>Invertebrates</subject><subject>Life Sciences</subject><subject>Marine</subject><subject>Marine aquaculture</subject><subject>Marine biology</subject><subject>messenger RNA</subject><subject>Microbiology</subject><subject>Non-Fibrillar Collagens - biosynthesis</subject><subject>Non-Fibrillar Collagens - chemistry</subject><subject>Non-Fibrillar Collagens - genetics</subject><subject>Oceans and Seas</subject><subject>open reading frames</subject><subject>Original Article</subject><subject>phylogeny</subject><subject>Porifera - classification</subject><subject>Porifera - drug effects</subject><subject>Porifera - metabolism</subject><subject>quantitative polymerase chain reaction</subject><subject>Seawater</subject><subject>Silica</subject><subject>Silicates</subject><subject>Silicates - chemistry</subject><subject>Silicates - pharmacology</subject><subject>silicon</subject><subject>Solubility</subject><subject>Species Specificity</subject><subject>Studies</subject><subject>Sustainable development</subject><subject>Sustainable production</subject><subject>tissue 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Characterization of a Nonfibrillar Collagen from the Marine Sponge Chondrosia reniformis Nardo 1847 and Positive Effects of Soluble Silicates on Its Expression</title><author>Pozzolini, Marina ; Bruzzone, Federica ; Berilli, Valentina ; Mussino, Francesca ; Cerrano, Carlo ; Benatti, Umberto ; Giovine, Marco</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c427t-1b260afd9af48f5d6317bfa1388521bf1955c0ea0e6f707baa25d8eeb8672c843</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>amino acid sequences</topic><topic>Amino acids</topic><topic>Animals</topic><topic>Biomedical and Life Sciences</topic><topic>Biotechnology</topic><topic>Chondrosia reniformis</topic><topic>Collagen</topic><topic>complementary DNA</topic><topic>Composite materials</topic><topic>Deoxyribonucleic acid</topic><topic>DNA</topic><topic>Engineering</topic><topic>Evolution</topic><topic>Extracellular 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COLch cDNA consists of 2,563 nucleotides and includes a 5′ untranslated region (UTR) of 136 nucleotides, a 3′ UTR of 198 nucleotides, and an open reading frame encoding for a protein of 743 amino acids with an estimated M r of 72.12 kDa. The phylogenetic analysis on the deduced amino acid sequence of C-terminal end shows that the isolated sequence belongs to the short-chain spongin-like collagen subfamily, a nonfibrillar group of invertebrate collagens similar to type IV collagen. In situ hybridization analysis shows higher expression of COLch mRNA in the cortical part than in the inner part of the sponge. Therefore, COLch seems to be involved in the formation of C. reniformis ectosome, where it could play a key role in the attachment to the rocky substrata and in the selective sediment incorporation typical of these organisms. qPCR analysis of COLch mRNA level, performed on C. reniformis tissue culture models (fragmorphs), also demonstrates that this matrix protein is directly involved in sponge healing processes and that soluble silicates positively regulate its expression. These findings confirm the essential role of silicon in the fibrogenesis process also in lower invertebrates, and they should give a tool for a sustainable production of marine collagen in sponge mariculture.</abstract><cop>New York</cop><pub>Springer-Verlag</pub><pmid>22072047</pmid><doi>10.1007/s10126-011-9415-2</doi><tpages>13</tpages></addata></record> |
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subjects | amino acid sequences Amino acids Animals Biomedical and Life Sciences Biotechnology Chondrosia reniformis Collagen complementary DNA Composite materials Deoxyribonucleic acid DNA Engineering Evolution Extracellular matrix Freshwater & Marine Ecology Gene expression in situ hybridization Invertebrates Life Sciences Marine Marine aquaculture Marine biology messenger RNA Microbiology Non-Fibrillar Collagens - biosynthesis Non-Fibrillar Collagens - chemistry Non-Fibrillar Collagens - genetics Oceans and Seas open reading frames Original Article phylogeny Porifera - classification Porifera - drug effects Porifera - metabolism quantitative polymerase chain reaction Seawater Silica Silicates Silicates - chemistry Silicates - pharmacology silicon Solubility Species Specificity Studies Sustainable development Sustainable production tissue culture Zoology |
title | Molecular Characterization of a Nonfibrillar Collagen from the Marine Sponge Chondrosia reniformis Nardo 1847 and Positive Effects of Soluble Silicates on Its Expression |
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