ES proteins analysis of Angiostrongylus cantonensis: products of the potential parasitism genes
The expressed sequence tags (ESTs) of Angiostrongylus cantonensis were analyzed in an attempt to gain further insight into its genomic expression patterns. A total of 1,277 ESTs of A. cantonensis were randomly downloaded from NCBI databank. ESTs were analyzed and annotated using Blastx. The result s...
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description | The expressed sequence tags (ESTs) of Angiostrongylus cantonensis were analyzed in an attempt to gain further insight into its genomic expression patterns. A total of 1,277 ESTs of A. cantonensis were randomly downloaded from NCBI databank. ESTs were analyzed and annotated using Blastx. The result showed that there were 60 ESTs had no match to any of the proteins and gene sequences in the published databases, and 695 ESTs score more than 80. According to the function, the identified 695 ESTs could be grouped into 13 categories related to metabolism, cellular development, immune evasion, host-parasite interactions, and so on. Among them, 65 (9.4%) were proteases and protease inhibitors, represented 19 potential proteases and protease inhibitors genes; 42 (6.0%) were allergens or antigens, represented 15 potential antigens/allergens genes. SignalP analysis was applied to the 19 putative proteases and protease inhibitors and the 15 antigens/allergens protein sequences to identify the potential signal peptides and anchors. The result demonstrated that there were ten putative proteins had N-terminal signal peptides and three had signal anchors, these putative excretory/secretory proteins might be the products of potential parasitism genes which played an important role in the adaptation of A. cantonensis to a parasitism life. These parasitism genes and proteins identified are expected to become potential targets for future research on anti-A. cantonensis drugs; moreover, the resulting genetic information is useful in elucidating the mechanisms of parasitism of A. cantonensis. |
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A total of 1,277 ESTs of A. cantonensis were randomly downloaded from NCBI databank. ESTs were analyzed and annotated using Blastx. The result showed that there were 60 ESTs had no match to any of the proteins and gene sequences in the published databases, and 695 ESTs score more than 80. According to the function, the identified 695 ESTs could be grouped into 13 categories related to metabolism, cellular development, immune evasion, host-parasite interactions, and so on. Among them, 65 (9.4%) were proteases and protease inhibitors, represented 19 potential proteases and protease inhibitors genes; 42 (6.0%) were allergens or antigens, represented 15 potential antigens/allergens genes. SignalP analysis was applied to the 19 putative proteases and protease inhibitors and the 15 antigens/allergens protein sequences to identify the potential signal peptides and anchors. The result demonstrated that there were ten putative proteins had N-terminal signal peptides and three had signal anchors, these putative excretory/secretory proteins might be the products of potential parasitism genes which played an important role in the adaptation of A. cantonensis to a parasitism life. These parasitism genes and proteins identified are expected to become potential targets for future research on anti-A. cantonensis drugs; moreover, the resulting genetic information is useful in elucidating the mechanisms of parasitism of A. cantonensis.</description><identifier>ISSN: 0932-0113</identifier><identifier>EISSN: 1432-1955</identifier><identifier>DOI: 10.1007/s00436-010-1751-z</identifier><identifier>PMID: 20177908</identifier><identifier>CODEN: PARREZ</identifier><language>eng</language><publisher>Berlin/Heidelberg: Berlin/Heidelberg : Springer-Verlag</publisher><subject>Angiostrongylus cantonensis ; Angiostrongylus cantonensis - genetics ; Angiostrongylus cantonensis - pathogenicity ; Animals ; Biological and medical sciences ; Biomedical and Life Sciences ; Biomedicine ; Expressed Sequence Tags ; Fundamental and applied biological sciences. Psychology ; Gene expression ; General aspects ; General aspects and techniques. Study of several systematic groups. Models ; Genetic aspects ; Health aspects ; Helminth Proteins - genetics ; Host-Parasite Interactions ; Immunology ; Invertebrates ; Medical Microbiology ; Microbial genetics ; Microbiology ; Original Paper ; Parasitism ; Physiological aspects ; Protein Sorting Signals ; Virulence Factors - genetics</subject><ispartof>Parasitology research (1987), 2010-04, Vol.106 (5), p.1027-1032</ispartof><rights>Springer-Verlag 2010</rights><rights>2015 INIST-CNRS</rights><rights>COPYRIGHT 2010 Springer</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c468t-a31be27ed011ed5c72fab261d3dfe1db37302835b768f4d09eafde05879814243</citedby><cites>FETCH-LOGICAL-c468t-a31be27ed011ed5c72fab261d3dfe1db37302835b768f4d09eafde05879814243</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s00436-010-1751-z$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s00436-010-1751-z$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27922,27923,41486,42555,51317</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=22649510$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/20177908$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Fang, Wenzhen</creatorcontrib><creatorcontrib>Xu, Shisan</creatorcontrib><creatorcontrib>Wang, Yinan</creatorcontrib><creatorcontrib>Ni, Fang</creatorcontrib><creatorcontrib>Zhang, Shaolei</creatorcontrib><creatorcontrib>Liu, Jiang</creatorcontrib><creatorcontrib>Chen, Xiaobin</creatorcontrib><creatorcontrib>Luo, Damin</creatorcontrib><title>ES proteins analysis of Angiostrongylus cantonensis: products of the potential parasitism genes</title><title>Parasitology research (1987)</title><addtitle>Parasitol Res</addtitle><addtitle>Parasitol Res</addtitle><description>The expressed sequence tags (ESTs) of Angiostrongylus cantonensis were analyzed in an attempt to gain further insight into its genomic expression patterns. A total of 1,277 ESTs of A. cantonensis were randomly downloaded from NCBI databank. ESTs were analyzed and annotated using Blastx. The result showed that there were 60 ESTs had no match to any of the proteins and gene sequences in the published databases, and 695 ESTs score more than 80. According to the function, the identified 695 ESTs could be grouped into 13 categories related to metabolism, cellular development, immune evasion, host-parasite interactions, and so on. Among them, 65 (9.4%) were proteases and protease inhibitors, represented 19 potential proteases and protease inhibitors genes; 42 (6.0%) were allergens or antigens, represented 15 potential antigens/allergens genes. SignalP analysis was applied to the 19 putative proteases and protease inhibitors and the 15 antigens/allergens protein sequences to identify the potential signal peptides and anchors. The result demonstrated that there were ten putative proteins had N-terminal signal peptides and three had signal anchors, these putative excretory/secretory proteins might be the products of potential parasitism genes which played an important role in the adaptation of A. cantonensis to a parasitism life. These parasitism genes and proteins identified are expected to become potential targets for future research on anti-A. cantonensis drugs; moreover, the resulting genetic information is useful in elucidating the mechanisms of parasitism of A. cantonensis.</description><subject>Angiostrongylus cantonensis</subject><subject>Angiostrongylus cantonensis - genetics</subject><subject>Angiostrongylus cantonensis - pathogenicity</subject><subject>Animals</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Expressed Sequence Tags</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene expression</subject><subject>General aspects</subject><subject>General aspects and techniques. Study of several systematic groups. Models</subject><subject>Genetic aspects</subject><subject>Health aspects</subject><subject>Helminth Proteins - genetics</subject><subject>Host-Parasite Interactions</subject><subject>Immunology</subject><subject>Invertebrates</subject><subject>Medical Microbiology</subject><subject>Microbial genetics</subject><subject>Microbiology</subject><subject>Original Paper</subject><subject>Parasitism</subject><subject>Physiological aspects</subject><subject>Protein Sorting Signals</subject><subject>Virulence Factors - genetics</subject><issn>0932-0113</issn><issn>1432-1955</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2010</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkcFu1DAQhi0EotvCA3CBXBCnlBk7jhNuq6oUpEocSs-Wk9jBVdZePMlh-_R4mwVuYB889nz_zMg_Y28QLhFAfSSAStQlIJSoJJaPz9gGK8FLbKV8zjbQ5hgQxRk7J3oAQFVX1Ut2xnOkWmg2TF_fFfsUZ-sDFSaY6UCeiuiKbRh9pDnFMB6mhYrehDkGG3L601ExLP38BM4_bLHPBcLszVTsTTLkZ0-7YrTB0iv2wpmJ7OvTecHuP19_v_pS3n67-Xq1vS37qm7m0gjsLFd2yNPaQfaKO9PxGgcxOItDJ5QA3gjZqbpx1QCtNW6wIBvVNljxSlywD2vdPNrPxdKsd556O00m2LiQbusGa2wk_JdUIi9Z4ZG8XMnRTFb74OKcTJ_3YHe-z5_hfH7fCpBtW2c_sgBXQZ8iUbJO75PfmXTQCPromF4d03C8Z8f0Y9a8PY2zdDs7_FH8tigD70-Aod5MLpnQe_rL8bpq5dO0fOUop8Jok36IS8qO0j-7v1tFzkRtxpQL39_l1gKw4QIViF9QWrgg</recordid><startdate>20100401</startdate><enddate>20100401</enddate><creator>Fang, Wenzhen</creator><creator>Xu, Shisan</creator><creator>Wang, Yinan</creator><creator>Ni, Fang</creator><creator>Zhang, Shaolei</creator><creator>Liu, Jiang</creator><creator>Chen, Xiaobin</creator><creator>Luo, Damin</creator><general>Berlin/Heidelberg : Springer-Verlag</general><general>Springer-Verlag</general><general>Springer</general><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>8FD</scope><scope>FR3</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20100401</creationdate><title>ES proteins analysis of Angiostrongylus cantonensis: products of the potential parasitism genes</title><author>Fang, Wenzhen ; Xu, Shisan ; Wang, Yinan ; Ni, Fang ; Zhang, Shaolei ; Liu, Jiang ; Chen, Xiaobin ; Luo, Damin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c468t-a31be27ed011ed5c72fab261d3dfe1db37302835b768f4d09eafde05879814243</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2010</creationdate><topic>Angiostrongylus cantonensis</topic><topic>Angiostrongylus cantonensis - genetics</topic><topic>Angiostrongylus cantonensis - pathogenicity</topic><topic>Animals</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Expressed Sequence Tags</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene expression</topic><topic>General aspects</topic><topic>General aspects and techniques. Study of several systematic groups. Models</topic><topic>Genetic aspects</topic><topic>Health aspects</topic><topic>Helminth Proteins - genetics</topic><topic>Host-Parasite Interactions</topic><topic>Immunology</topic><topic>Invertebrates</topic><topic>Medical Microbiology</topic><topic>Microbial genetics</topic><topic>Microbiology</topic><topic>Original Paper</topic><topic>Parasitism</topic><topic>Physiological aspects</topic><topic>Protein Sorting Signals</topic><topic>Virulence Factors - genetics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Fang, Wenzhen</creatorcontrib><creatorcontrib>Xu, Shisan</creatorcontrib><creatorcontrib>Wang, Yinan</creatorcontrib><creatorcontrib>Ni, Fang</creatorcontrib><creatorcontrib>Zhang, Shaolei</creatorcontrib><creatorcontrib>Liu, Jiang</creatorcontrib><creatorcontrib>Chen, Xiaobin</creatorcontrib><creatorcontrib>Luo, Damin</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Parasitology research (1987)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Fang, Wenzhen</au><au>Xu, Shisan</au><au>Wang, Yinan</au><au>Ni, Fang</au><au>Zhang, Shaolei</au><au>Liu, Jiang</au><au>Chen, Xiaobin</au><au>Luo, Damin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>ES proteins analysis of Angiostrongylus cantonensis: products of the potential parasitism genes</atitle><jtitle>Parasitology research (1987)</jtitle><stitle>Parasitol Res</stitle><addtitle>Parasitol Res</addtitle><date>2010-04-01</date><risdate>2010</risdate><volume>106</volume><issue>5</issue><spage>1027</spage><epage>1032</epage><pages>1027-1032</pages><issn>0932-0113</issn><eissn>1432-1955</eissn><coden>PARREZ</coden><abstract>The expressed sequence tags (ESTs) of Angiostrongylus cantonensis were analyzed in an attempt to gain further insight into its genomic expression patterns. A total of 1,277 ESTs of A. cantonensis were randomly downloaded from NCBI databank. ESTs were analyzed and annotated using Blastx. The result showed that there were 60 ESTs had no match to any of the proteins and gene sequences in the published databases, and 695 ESTs score more than 80. According to the function, the identified 695 ESTs could be grouped into 13 categories related to metabolism, cellular development, immune evasion, host-parasite interactions, and so on. Among them, 65 (9.4%) were proteases and protease inhibitors, represented 19 potential proteases and protease inhibitors genes; 42 (6.0%) were allergens or antigens, represented 15 potential antigens/allergens genes. SignalP analysis was applied to the 19 putative proteases and protease inhibitors and the 15 antigens/allergens protein sequences to identify the potential signal peptides and anchors. The result demonstrated that there were ten putative proteins had N-terminal signal peptides and three had signal anchors, these putative excretory/secretory proteins might be the products of potential parasitism genes which played an important role in the adaptation of A. cantonensis to a parasitism life. These parasitism genes and proteins identified are expected to become potential targets for future research on anti-A. cantonensis drugs; moreover, the resulting genetic information is useful in elucidating the mechanisms of parasitism of A. cantonensis.</abstract><cop>Berlin/Heidelberg</cop><pub>Berlin/Heidelberg : Springer-Verlag</pub><pmid>20177908</pmid><doi>10.1007/s00436-010-1751-z</doi><tpages>6</tpages></addata></record> |
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subjects | Angiostrongylus cantonensis Angiostrongylus cantonensis - genetics Angiostrongylus cantonensis - pathogenicity Animals Biological and medical sciences Biomedical and Life Sciences Biomedicine Expressed Sequence Tags Fundamental and applied biological sciences. Psychology Gene expression General aspects General aspects and techniques. Study of several systematic groups. Models Genetic aspects Health aspects Helminth Proteins - genetics Host-Parasite Interactions Immunology Invertebrates Medical Microbiology Microbial genetics Microbiology Original Paper Parasitism Physiological aspects Protein Sorting Signals Virulence Factors - genetics |
title | ES proteins analysis of Angiostrongylus cantonensis: products of the potential parasitism genes |
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