Kiwifruit floral gene APETALA2 is alternatively spliced and accumulates in aberrant indeterminate flowers in the absence of miR172
In Arabidopsis , the identity of perianth and reproductive organs are specified by antagonistic action of two floral homeotic genes, APETALA2 ( AP2 ) and AGAMOUS ( AG ). AP2 is also negatively regulated by an evolutionary conserved interaction with a microRNA, miR172, and has additional roles in gen...
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creator | Varkonyi-Gasic, Erika Lough, Robyn H. Moss, Sarah M. A. Wu, Rongmei Hellens, Roger P. |
description | In
Arabidopsis
, the identity of perianth and reproductive organs are specified by antagonistic action of two floral homeotic genes,
APETALA2
(
AP2
) and
AGAMOUS
(
AG
).
AP2
is also negatively regulated by an evolutionary conserved interaction with a microRNA, miR172, and has additional roles in general plant development. A kiwifruit gene with high levels of homology to
AP2
and
AP2
-like genes from other plant species was identified. The transcript was abundant in the kiwifruit flower, particularly petal, suggesting a role in floral organ identity. Splice variants were identified, all containing both AP2 domains, including a variant that potentially produces a shorter transcript without the miRNA172 targeting site. Increased
AP2
transcript accumulation was detected in the aberrant flowers of the mutant ‘Pukekohe dwarf’ with multiple perianth whorls and extended petaloid features. In contrast to normal kiwifruit flowers, the aberrant flowers failed to accumulate miR172 in the developing whorls, although accumulation was detected at the base of the flower. An additional role during dormancy in kiwifruit was proposed based on
AP2
transcript accumulation in axillary buds before and after budbreak. |
doi_str_mv | 10.1007/s11103-012-9877-2 |
format | Article |
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Arabidopsis
, the identity of perianth and reproductive organs are specified by antagonistic action of two floral homeotic genes,
APETALA2
(
AP2
) and
AGAMOUS
(
AG
).
AP2
is also negatively regulated by an evolutionary conserved interaction with a microRNA, miR172, and has additional roles in general plant development. A kiwifruit gene with high levels of homology to
AP2
and
AP2
-like genes from other plant species was identified. The transcript was abundant in the kiwifruit flower, particularly petal, suggesting a role in floral organ identity. Splice variants were identified, all containing both AP2 domains, including a variant that potentially produces a shorter transcript without the miRNA172 targeting site. Increased
AP2
transcript accumulation was detected in the aberrant flowers of the mutant ‘Pukekohe dwarf’ with multiple perianth whorls and extended petaloid features. In contrast to normal kiwifruit flowers, the aberrant flowers failed to accumulate miR172 in the developing whorls, although accumulation was detected at the base of the flower. An additional role during dormancy in kiwifruit was proposed based on
AP2
transcript accumulation in axillary buds before and after budbreak.</description><identifier>ISSN: 0167-4412</identifier><identifier>EISSN: 1573-5028</identifier><identifier>DOI: 10.1007/s11103-012-9877-2</identifier><identifier>PMID: 22290408</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Accumulation ; Actinidia - genetics ; Alternative Splicing ; Amino Acid Sequence ; Arabidopsis ; Arabidopsis Proteins - genetics ; Biochemistry ; Biomedical and Life Sciences ; Buds ; Development ; Dormancy ; Evolutionary conservation ; Flowers ; Flowers & plants ; Flowers - genetics ; Flowers - growth & development ; Fruits ; Gene Expression Regulation, Plant ; Homeodomain Proteins - genetics ; Homology ; Life Sciences ; MicroRNAs ; miRNA ; Molecular Sequence Data ; Mutation ; Nuclear Proteins - genetics ; petals ; Phylogeny ; Plant biology ; Plant growth ; Plant Pathology ; Plant Sciences ; Plant species ; Reproductive organs ; Seasons ; Sequence Homology, Nucleic Acid ; Transcription</subject><ispartof>Plant molecular biology, 2012-03, Vol.78 (4-5), p.417-429</ispartof><rights>Springer Science+Business Media B.V. 2012</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c403t-441929daf1794963f6490fbc00c4683227e43b3371a56042058bc7a567e6a4d63</citedby><cites>FETCH-LOGICAL-c403t-441929daf1794963f6490fbc00c4683227e43b3371a56042058bc7a567e6a4d63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s11103-012-9877-2$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s11103-012-9877-2$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22290408$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Varkonyi-Gasic, Erika</creatorcontrib><creatorcontrib>Lough, Robyn H.</creatorcontrib><creatorcontrib>Moss, Sarah M. A.</creatorcontrib><creatorcontrib>Wu, Rongmei</creatorcontrib><creatorcontrib>Hellens, Roger P.</creatorcontrib><title>Kiwifruit floral gene APETALA2 is alternatively spliced and accumulates in aberrant indeterminate flowers in the absence of miR172</title><title>Plant molecular biology</title><addtitle>Plant Mol Biol</addtitle><addtitle>Plant Mol Biol</addtitle><description>In
Arabidopsis
, the identity of perianth and reproductive organs are specified by antagonistic action of two floral homeotic genes,
APETALA2
(
AP2
) and
AGAMOUS
(
AG
).
AP2
is also negatively regulated by an evolutionary conserved interaction with a microRNA, miR172, and has additional roles in general plant development. A kiwifruit gene with high levels of homology to
AP2
and
AP2
-like genes from other plant species was identified. The transcript was abundant in the kiwifruit flower, particularly petal, suggesting a role in floral organ identity. Splice variants were identified, all containing both AP2 domains, including a variant that potentially produces a shorter transcript without the miRNA172 targeting site. Increased
AP2
transcript accumulation was detected in the aberrant flowers of the mutant ‘Pukekohe dwarf’ with multiple perianth whorls and extended petaloid features. In contrast to normal kiwifruit flowers, the aberrant flowers failed to accumulate miR172 in the developing whorls, although accumulation was detected at the base of the flower. An additional role during dormancy in kiwifruit was proposed based on
AP2
transcript accumulation in axillary buds before and after budbreak.</description><subject>Accumulation</subject><subject>Actinidia - genetics</subject><subject>Alternative Splicing</subject><subject>Amino Acid Sequence</subject><subject>Arabidopsis</subject><subject>Arabidopsis Proteins - genetics</subject><subject>Biochemistry</subject><subject>Biomedical and Life Sciences</subject><subject>Buds</subject><subject>Development</subject><subject>Dormancy</subject><subject>Evolutionary conservation</subject><subject>Flowers</subject><subject>Flowers & plants</subject><subject>Flowers - genetics</subject><subject>Flowers - growth & development</subject><subject>Fruits</subject><subject>Gene Expression Regulation, Plant</subject><subject>Homeodomain Proteins - genetics</subject><subject>Homology</subject><subject>Life Sciences</subject><subject>MicroRNAs</subject><subject>miRNA</subject><subject>Molecular Sequence Data</subject><subject>Mutation</subject><subject>Nuclear Proteins - genetics</subject><subject>petals</subject><subject>Phylogeny</subject><subject>Plant biology</subject><subject>Plant growth</subject><subject>Plant Pathology</subject><subject>Plant Sciences</subject><subject>Plant species</subject><subject>Reproductive organs</subject><subject>Seasons</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Transcription</subject><issn>0167-4412</issn><issn>1573-5028</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNp9kU1v1DAQhi0EokvhB3BBFhe4BMYfa8fHVVU-xEogVM6R40yKKydZ7KRVr_xyJmwBCQkOoxnJz_uOPC9jTwW8EgD2dRFCgKpAyMrV1lbyHtuIrVXVFmR9n21AGFtpLeQJe1TKFQCplHnITqSUDjTUG_b9Q7yJfV7izPs0ZZ_4JY7Id5_OL3b7neSxcJ9mzKOf4zWmW14OKQbsuB-pQliGJfkZC48j9y3m7MeZ5g5JM0RS4ep7g_knMX9FogqOAfnU8yF-FlY-Zg96nwo-ueun7Mub84uzd9X-49v3Z7t9FTSoef2Hk67zvbBOO6N6ox30bQAI2tRKSotatUpZ4bcGtIRt3QZLs0XjdWfUKXtx9D3k6duCZW6GWAKm5EecltI4paWxxq3ky_-Sgs4Loqb9hD7_C72aFrpWIj8pFFhlLEHiCIU8lZKxbw45Dj7fklOzJtkck2woyWZNspGkeXZnvLQDdr8Vv6IjQB6BQk_jJeY_m__t-gPY2ab0</recordid><startdate>20120301</startdate><enddate>20120301</enddate><creator>Varkonyi-Gasic, Erika</creator><creator>Lough, Robyn H.</creator><creator>Moss, Sarah M. A.</creator><creator>Wu, Rongmei</creator><creator>Hellens, Roger P.</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope></search><sort><creationdate>20120301</creationdate><title>Kiwifruit floral gene APETALA2 is alternatively spliced and accumulates in aberrant indeterminate flowers in the absence of miR172</title><author>Varkonyi-Gasic, Erika ; Lough, Robyn H. ; Moss, Sarah M. A. ; Wu, Rongmei ; Hellens, Roger P.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c403t-441929daf1794963f6490fbc00c4683227e43b3371a56042058bc7a567e6a4d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Accumulation</topic><topic>Actinidia - genetics</topic><topic>Alternative Splicing</topic><topic>Amino Acid Sequence</topic><topic>Arabidopsis</topic><topic>Arabidopsis Proteins - genetics</topic><topic>Biochemistry</topic><topic>Biomedical and Life Sciences</topic><topic>Buds</topic><topic>Development</topic><topic>Dormancy</topic><topic>Evolutionary conservation</topic><topic>Flowers</topic><topic>Flowers & plants</topic><topic>Flowers - genetics</topic><topic>Flowers - growth & development</topic><topic>Fruits</topic><topic>Gene Expression Regulation, Plant</topic><topic>Homeodomain Proteins - genetics</topic><topic>Homology</topic><topic>Life Sciences</topic><topic>MicroRNAs</topic><topic>miRNA</topic><topic>Molecular Sequence Data</topic><topic>Mutation</topic><topic>Nuclear Proteins - genetics</topic><topic>petals</topic><topic>Phylogeny</topic><topic>Plant biology</topic><topic>Plant growth</topic><topic>Plant Pathology</topic><topic>Plant Sciences</topic><topic>Plant species</topic><topic>Reproductive organs</topic><topic>Seasons</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Transcription</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Varkonyi-Gasic, Erika</creatorcontrib><creatorcontrib>Lough, Robyn H.</creatorcontrib><creatorcontrib>Moss, Sarah M. A.</creatorcontrib><creatorcontrib>Wu, Rongmei</creatorcontrib><creatorcontrib>Hellens, Roger P.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>Plant molecular biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Varkonyi-Gasic, Erika</au><au>Lough, Robyn H.</au><au>Moss, Sarah M. A.</au><au>Wu, Rongmei</au><au>Hellens, Roger P.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Kiwifruit floral gene APETALA2 is alternatively spliced and accumulates in aberrant indeterminate flowers in the absence of miR172</atitle><jtitle>Plant molecular biology</jtitle><stitle>Plant Mol Biol</stitle><addtitle>Plant Mol Biol</addtitle><date>2012-03-01</date><risdate>2012</risdate><volume>78</volume><issue>4-5</issue><spage>417</spage><epage>429</epage><pages>417-429</pages><issn>0167-4412</issn><eissn>1573-5028</eissn><abstract>In
Arabidopsis
, the identity of perianth and reproductive organs are specified by antagonistic action of two floral homeotic genes,
APETALA2
(
AP2
) and
AGAMOUS
(
AG
).
AP2
is also negatively regulated by an evolutionary conserved interaction with a microRNA, miR172, and has additional roles in general plant development. A kiwifruit gene with high levels of homology to
AP2
and
AP2
-like genes from other plant species was identified. The transcript was abundant in the kiwifruit flower, particularly petal, suggesting a role in floral organ identity. Splice variants were identified, all containing both AP2 domains, including a variant that potentially produces a shorter transcript without the miRNA172 targeting site. Increased
AP2
transcript accumulation was detected in the aberrant flowers of the mutant ‘Pukekohe dwarf’ with multiple perianth whorls and extended petaloid features. In contrast to normal kiwifruit flowers, the aberrant flowers failed to accumulate miR172 in the developing whorls, although accumulation was detected at the base of the flower. An additional role during dormancy in kiwifruit was proposed based on
AP2
transcript accumulation in axillary buds before and after budbreak.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>22290408</pmid><doi>10.1007/s11103-012-9877-2</doi><tpages>13</tpages></addata></record> |
fulltext | fulltext |
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ispartof | Plant molecular biology, 2012-03, Vol.78 (4-5), p.417-429 |
issn | 0167-4412 1573-5028 |
language | eng |
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source | MEDLINE; SpringerLink Journals |
subjects | Accumulation Actinidia - genetics Alternative Splicing Amino Acid Sequence Arabidopsis Arabidopsis Proteins - genetics Biochemistry Biomedical and Life Sciences Buds Development Dormancy Evolutionary conservation Flowers Flowers & plants Flowers - genetics Flowers - growth & development Fruits Gene Expression Regulation, Plant Homeodomain Proteins - genetics Homology Life Sciences MicroRNAs miRNA Molecular Sequence Data Mutation Nuclear Proteins - genetics petals Phylogeny Plant biology Plant growth Plant Pathology Plant Sciences Plant species Reproductive organs Seasons Sequence Homology, Nucleic Acid Transcription |
title | Kiwifruit floral gene APETALA2 is alternatively spliced and accumulates in aberrant indeterminate flowers in the absence of miR172 |
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